Wall clock time and date at job start Mon Mar 30 2020 01:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47052 * 2 1 4 4 C 1.37100 * 119.99468 * 264.75381 * 3 2 1 5 5 H 1.08002 * 119.99872 * 138.83066 * 4 3 2 6 6 C 1.38939 * 120.00188 * 318.82395 * 4 3 2 7 7 N 1.31420 * 120.00144 * 341.84441 * 6 4 3 8 8 Si 1.86806 * 120.00013 * 161.84360 * 6 4 3 9 9 H 1.48492 * 109.47058 * 60.00244 * 8 6 4 10 10 H 1.48504 * 109.46693 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46948 * 299.99849 * 8 6 4 12 12 C 1.34775 * 119.99938 * 84.74702 * 3 2 1 13 13 O 1.21298 * 119.99345 * 179.97438 * 12 3 2 14 14 C 1.50699 * 120.00178 * 0.28028 * 12 3 2 15 15 C 1.50699 * 109.46675 * 179.71875 * 14 12 3 16 16 C 1.32591 * 119.99609 * 125.00400 * 15 14 12 17 17 C 1.47787 * 119.99696 * 179.97438 * 16 15 14 18 18 C 1.39528 * 120.15594 * 359.71811 * 17 16 15 19 19 C 1.37949 * 119.88076 * 179.74672 * 18 17 16 20 20 C 1.38382 * 120.19400 * 0.55390 * 19 18 17 21 21 C 1.38271 * 120.31507 * 359.70015 * 20 19 18 22 22 C 1.38246 * 120.11654 * 0.02562 * 21 20 19 23 23 F 1.35094 * 120.10309 * 179.97438 * 22 21 20 24 24 H 1.08996 * 109.47342 * 300.00167 * 1 2 3 25 25 H 1.08999 * 109.46876 * 60.00633 * 1 2 3 26 26 H 1.09005 * 109.46739 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47140 * 239.99319 * 2 1 3 28 28 H 1.09005 * 109.46582 * 119.99711 * 2 1 3 29 29 H 0.96996 * 120.00169 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47082 * 299.71832 * 14 12 3 31 31 H 1.08998 * 109.46932 * 59.72127 * 14 12 3 32 32 H 1.07999 * 120.00870 * 304.99498 * 15 14 12 33 33 H 1.07993 * 119.99852 * 359.97438 * 16 15 14 34 34 H 1.08000 * 120.06064 * 0.02934 * 18 17 16 35 35 H 1.08001 * 119.90558 * 180.25542 * 19 18 17 36 36 H 1.08001 * 119.84523 * 179.72326 * 20 19 18 37 37 H 1.07999 * 119.94348 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3492 1.9912 -1.1824 5 1 2.0743 3.0215 -1.3539 6 6 3.0382 1.2841 -2.1600 7 7 3.6803 0.1818 -1.8441 8 14 3.0517 1.9001 -3.9235 9 1 3.6550 3.2562 -3.9695 10 1 3.8517 0.9742 -4.7650 11 1 1.6599 1.9598 -4.4377 12 6 2.1422 2.0522 1.1623 13 8 2.5470 3.1956 1.1622 14 6 1.7844 1.3795 2.4625 15 6 2.0173 2.3360 3.6035 16 6 1.0344 2.6094 4.4504 17 6 1.2629 3.5470 5.5697 18 6 2.5134 4.1417 5.7417 19 6 2.7189 5.0200 6.7854 20 6 1.6921 5.3040 7.6685 21 6 0.4512 4.7152 7.5087 22 6 0.2293 3.8374 6.4640 23 9 -0.9829 3.2619 6.3085 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 4.1616 -0.3117 -2.5265 30 1 0.7349 1.0859 2.4429 31 1 2.4068 0.4949 2.5972 32 1 2.9847 2.7986 3.7316 33 1 0.0669 2.1471 4.3222 34 1 3.3176 3.9183 5.0564 35 1 3.6855 5.4837 6.9165 36 1 1.8605 5.9891 8.4863 37 1 -0.3460 4.9415 8.2013 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495233571.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:34 Heat of formation + Delta-G solvation = -58.900874 kcal Electronic energy + Delta-G solvation = -20498.094587 eV Core-core repulsion = 17154.461807 eV Total energy + Delta-G solvation = -3343.632780 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.89431 -40.53223 -39.88350 -37.00287 -35.89906 -34.04975 -32.08716 -31.47098 -31.13458 -28.60995 -26.51575 -24.40488 -23.88675 -23.12276 -21.07979 -20.10999 -18.76265 -18.62573 -17.70244 -17.33510 -16.96050 -16.92543 -16.60733 -15.99330 -15.83862 -15.14010 -14.93515 -14.60379 -14.50221 -14.26269 -13.95910 -13.60660 -13.48698 -13.46781 -13.10909 -12.87315 -12.79832 -12.66035 -12.29481 -12.12673 -12.02810 -11.92095 -11.78394 -11.25798 -10.87573 -10.36458 -9.82139 -9.39604 -9.07173 -8.33669 -6.10688 -0.17550 0.24311 1.39416 1.40181 1.46202 1.51734 2.06347 2.30933 2.76625 3.01177 3.12599 3.26910 3.61963 3.75177 3.99977 4.07464 4.19625 4.24432 4.34300 4.36858 4.44099 4.59636 4.65241 4.68453 4.87644 4.94835 5.03542 5.09153 5.16017 5.27115 5.30720 5.45235 5.46629 5.55051 5.61158 5.72090 5.95796 6.24196 6.56224 7.19194 7.47319 8.08413 8.69707 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.030163 B = 0.003567 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.064106 B = 7848.314107 C = 8341.760893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.101 3.899 3 N -0.455 5.455 4 C -0.345 4.345 5 H 0.059 0.941 6 C 0.006 3.994 7 N -0.891 5.891 8 Si 0.980 3.020 9 H -0.278 1.278 10 H -0.271 1.271 11 H -0.264 1.264 12 C 0.450 3.550 13 O -0.628 6.628 14 C -0.099 4.099 15 C -0.100 4.100 16 C -0.140 4.140 17 C -0.097 4.097 18 C -0.106 4.106 19 C -0.125 4.125 20 C -0.090 4.090 21 C -0.152 4.152 22 C 0.077 3.923 23 F -0.147 7.147 24 H 0.054 0.946 25 H 0.039 0.961 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.273 0.727 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.156 0.844 36 H 0.169 0.831 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.160 2.131 16.596 17.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.023 4.023 3 N -0.174 5.174 4 C -0.473 4.473 5 H 0.077 0.923 6 C -0.197 4.197 7 N -0.528 5.528 8 Si 0.804 3.196 9 H -0.204 1.204 10 H -0.195 1.195 11 H -0.188 1.188 12 C 0.240 3.760 13 O -0.515 6.515 14 C -0.138 4.138 15 C -0.118 4.118 16 C -0.158 4.158 17 C -0.098 4.098 18 C -0.124 4.124 19 C -0.142 4.142 20 C -0.108 4.108 21 C -0.171 4.171 22 C 0.058 3.942 23 F -0.126 7.126 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.143 0.857 34 H 0.148 0.852 35 H 0.174 0.826 36 H 0.186 0.814 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.904 2.472 16.467 17.359 hybrid contribution -0.024 0.024 -1.288 1.289 sum -4.928 2.496 15.179 16.153 Atomic orbital electron populations 1.22127 0.95368 1.02575 1.01273 1.21590 0.93937 0.83468 1.03269 1.43754 1.56160 1.13023 1.04502 1.19301 1.36724 0.98142 0.93152 0.92348 1.26132 0.93079 0.96601 1.03870 1.69981 1.29324 1.18144 1.35351 0.85208 0.78864 0.78046 0.77501 1.20391 1.19516 1.18848 1.21208 0.80979 0.87508 0.86263 1.90473 1.52144 1.20995 1.87874 1.20740 1.04379 0.98735 0.89968 1.22943 0.99297 0.96344 0.93201 1.21515 0.99288 0.99432 0.95567 1.19216 0.94354 1.00041 0.96199 1.21465 0.95568 0.96624 0.98761 1.21521 1.01173 0.97407 0.94140 1.21483 0.91086 0.98647 0.99538 1.21412 1.00389 0.97580 0.97693 1.18052 0.80301 0.97824 0.98007 1.91441 1.42266 1.83364 1.95497 0.92664 0.94173 0.89541 0.90262 0.91187 0.91714 0.87497 0.87003 0.87153 0.85707 0.85156 0.82646 0.81402 0.82425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.31 10.15 71.98 0.73 -4.58 16 2 C 0.10 4.26 5.41 86.38 0.47 4.73 16 3 N -0.46 -23.54 2.50 -635.53 -1.59 -25.14 16 4 C -0.35 -19.89 8.84 84.04 0.74 -19.15 16 5 H 0.06 3.61 7.82 -2.91 -0.02 3.58 16 6 C 0.01 0.32 4.95 84.92 0.42 0.74 16 7 N -0.89 -48.39 11.61 21.66 0.25 -48.14 16 8 Si 0.98 42.81 29.59 68.60 2.03 44.84 16 9 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 11 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 12 C 0.45 22.61 7.59 87.66 0.66 23.27 16 13 O -0.63 -36.85 15.95 -3.09 -0.05 -36.90 16 14 C -0.10 -3.61 4.76 29.10 0.14 -3.47 16 15 C -0.10 -3.45 8.18 24.53 0.20 -3.25 16 16 C -0.14 -4.39 9.31 23.64 0.22 -4.17 16 17 C -0.10 -2.79 5.87 -20.08 -0.12 -2.91 16 18 C -0.11 -2.71 9.40 22.51 0.21 -2.50 16 19 C -0.12 -2.33 10.03 22.24 0.22 -2.11 16 20 C -0.09 -1.42 10.04 22.31 0.22 -1.19 16 21 C -0.15 -2.91 10.01 22.28 0.22 -2.69 16 22 C 0.08 2.01 7.28 22.63 0.16 2.17 16 23 F -0.15 -4.06 16.62 44.97 0.75 -3.31 16 24 H 0.05 1.74 6.62 -2.39 -0.02 1.72 16 25 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.09 2.33 8.14 -2.38 -0.02 2.32 16 27 H 0.08 3.76 5.76 -2.39 -0.01 3.75 16 28 H 0.07 2.61 6.65 -2.38 -0.02 2.60 16 29 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 30 H 0.11 3.38 6.23 -2.39 -0.01 3.37 16 31 H 0.11 3.66 7.41 -2.39 -0.02 3.64 16 32 H 0.11 3.94 6.04 -2.91 -0.02 3.92 16 33 H 0.13 3.67 7.55 -2.91 -0.02 3.65 16 34 H 0.13 3.40 6.17 -2.91 -0.02 3.38 16 35 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 37 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -71.18 318.40 6.99 -64.19 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 1.08 Total: 19.55 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 4.51 Total: -15.09 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -1.34 Total: -73.28 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -0.05 Total: -36.90 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.75 Total: -3.31 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -71.18 6.99 -64.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495233571.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.291 kcal (2) G-P(sol) polarization free energy of solvation -71.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds