Wall clock time and date at job start Mon Mar 30 2020 01:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46495 * 119.99831 * 2 1 4 4 C 1.50698 * 109.47420 * 275.00355 * 3 2 1 5 5 H 1.08006 * 120.00215 * 359.97438 * 4 3 2 6 6 C 1.37886 * 120.00264 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99492 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99918 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47403 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46945 * 120.00336 * 8 6 4 11 11 H 1.48499 * 109.46789 * 240.00147 * 8 6 4 12 12 S 1.65594 * 120.00098 * 180.02562 * 2 1 3 13 13 O 1.42106 * 106.40237 * 156.45603 * 12 2 1 14 14 O 1.42099 * 106.40287 * 23.54205 * 12 2 1 15 15 N 1.65599 * 107.22100 * 269.99765 * 12 2 1 16 16 C 1.46500 * 119.99931 * 64.99796 * 15 12 2 17 17 H 1.08998 * 110.90371 * 332.59688 * 16 15 12 18 18 C 1.55422 * 111.10625 * 208.63072 * 16 15 12 19 19 C 1.54321 * 103.04810 * 206.29847 * 18 16 15 20 20 N 1.47448 * 107.23159 * 22.28093 * 19 18 16 21 21 C 1.46900 * 111.00041 * 123.26094 * 20 19 18 22 22 C 1.47846 * 108.56553 * 0.99350 * 20 19 18 23 23 H 1.09000 * 109.46758 * 269.99238 * 1 2 3 24 24 H 1.08999 * 109.47328 * 29.99709 * 1 2 3 25 25 H 1.09003 * 109.46765 * 149.99882 * 1 2 3 26 26 H 1.09003 * 109.47105 * 35.00404 * 3 2 1 27 27 H 1.09001 * 109.47403 * 155.00340 * 3 2 1 28 28 H 0.97001 * 119.99532 * 180.02562 * 7 6 4 29 29 H 0.96998 * 120.00310 * 245.00609 * 15 12 2 30 30 H 1.09004 * 110.69757 * 87.90721 * 18 16 15 31 31 H 1.09005 * 110.84788 * 324.75602 * 18 16 15 32 32 H 1.08999 * 109.88748 * 262.87827 * 19 18 16 33 33 H 1.09000 * 109.89149 * 141.68777 * 19 18 16 34 34 H 1.09002 * 109.46663 * 299.15707 * 21 20 19 35 35 H 1.08994 * 109.47054 * 59.15579 * 21 20 19 36 36 H 1.08991 * 109.47396 * 179.16235 * 21 20 19 37 37 H 1.09002 * 110.37464 * 94.73346 * 22 20 19 38 38 H 1.08999 * 110.37318 * 216.96123 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7658 -1.4154 5 1 1.9288 1.1936 -2.2333 6 6 2.9997 2.9511 -1.6663 7 7 3.5024 3.6475 -0.6704 8 14 3.1786 3.5667 -3.4208 9 1 2.5311 2.6070 -4.3507 10 1 2.5268 4.8950 -3.5482 11 1 4.6196 3.6881 -3.7582 12 16 2.2930 -1.4341 -0.0006 13 8 3.5760 -1.1565 -0.5451 14 8 1.4114 -2.4062 -0.5455 15 7 2.5382 -1.8593 1.5809 16 6 1.3948 -2.1789 2.4392 17 1 0.4981 -1.6592 2.1019 18 6 1.7026 -1.8505 3.9268 19 6 0.7785 -2.8181 4.6957 20 7 0.4577 -3.9322 3.7847 21 6 0.8395 -5.2219 4.3755 22 6 1.1589 -3.7086 2.5024 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 1.6501 2.0043 0.5895 27 1 3.1858 1.1177 0.4342 28 1 3.9652 4.4815 -0.8469 29 1 3.4389 -1.8967 1.9391 30 1 1.4497 -0.8146 4.1530 31 1 2.7487 -2.0500 4.1597 32 1 -0.1366 -2.3031 4.9881 33 1 1.2916 -3.1976 5.5793 34 1 1.9141 -5.2340 4.5579 35 1 0.3094 -5.3610 5.3176 36 1 0.5784 -6.0274 3.6893 37 1 2.1105 -4.2401 2.4925 38 1 0.5361 -4.0313 1.6681 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000507308559.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:57 Heat of formation + Delta-G solvation = -94.330557 kcal Electronic energy + Delta-G solvation = -20717.885420 eV Core-core repulsion = 17528.080206 eV Total energy + Delta-G solvation = -3189.805214 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.10648 -38.25658 -37.22570 -36.85413 -35.63742 -34.50461 -31.61436 -29.67759 -29.22329 -26.78780 -26.16905 -24.21649 -22.30969 -21.86015 -20.49045 -19.03461 -18.37518 -18.28485 -17.64241 -16.86937 -16.75613 -16.21126 -15.43337 -15.20820 -14.95971 -14.76929 -14.42357 -14.18402 -14.05674 -13.93598 -13.46798 -13.33900 -13.15723 -13.04181 -13.01382 -12.92775 -12.59107 -12.47158 -12.40523 -12.37498 -12.15683 -11.95184 -11.74901 -11.64787 -10.62046 -10.54477 -9.79466 -9.30122 -8.20963 -6.32520 -0.33634 1.38574 1.41061 1.52723 1.99106 2.40192 2.60358 3.09255 3.11179 3.46556 3.53192 3.68587 3.98483 4.07530 4.21837 4.34284 4.40991 4.55016 4.59913 4.71544 4.76995 4.82293 4.91481 4.95333 5.02984 5.07133 5.14444 5.20355 5.29123 5.46295 5.69330 5.84029 5.92716 6.07563 6.09793 6.14163 6.76042 7.36466 8.86773 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.036746 B = 0.004711 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.796099 B = 5942.653803 C = 6164.131356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.002 6.002 3 C 0.272 3.728 4 C -0.550 4.550 5 H 0.051 0.949 6 C 0.013 3.987 7 N -0.923 5.923 8 Si 0.956 3.044 9 H -0.271 1.271 10 H -0.269 1.269 11 H -0.279 1.279 12 S 2.797 3.203 13 O -1.011 7.011 14 O -1.004 7.004 15 N -1.109 6.109 16 C 0.137 3.863 17 H 0.100 0.900 18 C -0.141 4.141 19 C 0.042 3.958 20 N -0.545 5.545 21 C 0.019 3.981 22 C 0.026 3.974 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.030 0.970 27 H 0.017 0.983 28 H 0.267 0.733 29 H 0.422 0.578 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.031 0.969 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.942 -12.723 12.746 18.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.844 5.844 3 C 0.148 3.852 4 C -0.590 4.590 5 H 0.069 0.931 6 C -0.187 4.187 7 N -0.563 5.563 8 Si 0.781 3.219 9 H -0.195 1.195 10 H -0.194 1.194 11 H -0.205 1.205 12 S 2.805 3.195 13 O -0.995 6.995 14 O -0.988 6.988 15 N -0.870 5.870 16 C 0.029 3.971 17 H 0.118 0.882 18 C -0.181 4.181 19 C -0.086 4.086 20 N -0.269 5.269 21 C -0.130 4.130 22 C -0.104 4.104 23 H 0.092 0.908 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.048 0.952 27 H 0.035 0.965 28 H 0.076 0.924 29 H 0.257 0.743 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.309 -13.071 11.860 18.743 hybrid contribution 1.516 0.730 -0.433 1.738 sum -4.793 -12.341 11.427 17.488 Atomic orbital electron populations 1.21627 0.78110 1.03695 1.02476 1.57461 1.15688 1.21921 1.89303 1.18612 0.90445 0.80250 0.95846 1.21887 1.36207 1.06615 0.94265 0.93067 1.25731 0.94784 0.96759 1.01414 1.70008 1.37914 1.15729 1.32679 0.85540 0.78025 0.78429 0.79916 1.19498 1.19420 1.20507 1.01249 0.72127 0.72551 0.73543 1.93578 1.43014 1.85456 1.77470 1.93516 1.67551 1.60017 1.77670 1.55802 1.15377 1.84915 1.30902 1.22044 0.87914 0.95280 0.91901 0.88225 1.23115 1.01146 1.01673 0.92162 1.22903 0.99291 0.91301 0.95056 1.63563 1.56361 1.03520 1.03491 1.22614 0.98912 0.90786 1.00658 1.23501 0.97861 0.95790 0.93246 0.90843 0.91005 0.90655 0.95162 0.96487 0.92359 0.74274 0.89033 0.89933 0.89278 0.90727 0.95046 0.89836 0.91354 0.92660 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.83 10.17 127.77 1.30 4.13 16 2 N -1.00 -40.85 3.23 -543.22 -1.75 -42.60 16 3 C 0.27 13.71 5.08 85.63 0.43 14.14 16 4 C -0.55 -31.29 9.38 25.60 0.24 -31.05 16 5 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 6 C 0.01 0.72 5.46 84.66 0.46 1.18 16 7 N -0.92 -53.98 13.29 21.45 0.28 -53.70 16 8 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 9 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 S 2.80 109.14 6.05 -56.49 -0.34 108.79 16 13 O -1.01 -48.97 17.11 -128.00 -2.19 -51.16 16 14 O -1.00 -40.59 16.50 -128.00 -2.11 -42.70 16 15 N -1.11 -31.24 5.71 -163.24 -0.93 -32.17 16 16 C 0.14 3.23 3.60 46.48 0.17 3.39 16 17 H 0.10 2.38 6.75 -2.39 -0.02 2.36 16 18 C -0.14 -2.51 6.61 31.88 0.21 -2.30 16 19 C 0.04 0.67 6.90 86.65 0.60 1.27 16 20 N -0.54 -10.54 5.44 -911.69 -4.96 -15.50 16 21 C 0.02 0.28 9.13 127.69 1.17 1.44 16 22 C 0.03 0.59 6.41 86.77 0.56 1.15 16 23 H 0.07 1.88 7.39 -2.39 -0.02 1.87 16 24 H 0.07 2.44 8.07 -2.39 -0.02 2.43 16 25 H 0.07 2.34 7.02 -2.39 -0.02 2.33 16 26 H 0.03 1.54 8.11 -2.39 -0.02 1.52 16 27 H 0.02 0.92 7.61 -2.39 -0.02 0.91 16 28 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 29 H 0.42 10.35 8.75 -96.75 -0.85 9.51 16 30 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.08 1.35 8.03 -2.38 -0.02 1.33 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 0.94 7.58 -2.39 -0.02 0.92 16 34 H 0.03 0.44 8.09 -2.39 -0.02 0.42 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.22 7.77 -2.39 -0.02 1.20 16 38 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -71.08 322.94 -4.65 -75.72 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.20 Total: 13.20 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 5.13 Total: -6.65 kcal Atomic # 7 Polarization: -136.61 SS G_CDS: -7.36 Total: -143.97 kcal Atomic # 8 Polarization: -89.56 SS G_CDS: -4.30 Total: -93.86 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 109.14 SS G_CDS: -0.34 Total: 108.79 kcal Total: -71.08 -4.65 -75.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507308559.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.609 kcal (2) G-P(sol) polarization free energy of solvation -71.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds