Wall clock time and date at job start Mon Mar 30 2020 01:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47238 * 2 1 4 4 C 1.47206 * 109.46907 * 240.00289 * 2 1 3 5 5 N 2.60805 * 109.46875 * 240.00278 * 2 1 3 6 6 C 1.52997 * 109.47295 * 120.00452 * 2 1 3 7 7 N 1.46509 * 109.46837 * 294.99991 * 6 2 1 8 8 C 1.34777 * 119.99703 * 180.02562 * 7 6 2 9 9 O 1.21589 * 120.00263 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99754 * 179.97438 * 8 7 6 11 11 C 1.40193 * 119.99728 * 179.97438 * 10 8 7 12 12 C 1.40401 * 125.97600 * 0.02562 * 11 10 8 13 13 C 1.35244 * 107.86868 * 179.97438 * 12 11 10 14 14 N 1.34965 * 107.85999 * 359.97438 * 13 12 11 15 15 C 1.46493 * 125.97624 * 179.97438 * 14 13 12 16 16 C 1.50710 * 109.46991 * 125.02899 * 15 14 13 17 17 H 1.08002 * 119.99873 * 0.02562 * 16 15 14 18 18 C 1.37869 * 120.00276 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00239 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 119.99973 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46775 * 90.00171 * 20 18 16 22 22 H 1.48496 * 109.47273 * 209.99980 * 20 18 16 23 23 H 1.48500 * 109.47108 * 330.00230 * 20 18 16 24 24 N 1.31214 * 125.96986 * 179.97438 * 11 10 8 25 25 H 1.08997 * 109.47238 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47009 * 300.00234 * 1 2 3 27 27 H 1.08999 * 109.46893 * 59.99367 * 1 2 3 28 28 H 1.09000 * 109.47022 * 175.00015 * 6 2 1 29 29 H 1.08996 * 109.47225 * 54.99206 * 6 2 1 30 30 H 0.96999 * 119.99737 * 359.97438 * 7 6 2 31 31 H 0.96999 * 119.99686 * 0.02562 * 10 8 7 32 32 H 1.07998 * 126.06449 * 0.02562 * 12 11 10 33 33 H 1.08000 * 126.07086 * 180.02562 * 13 12 11 34 34 H 1.09003 * 109.47538 * 245.02631 * 15 14 13 35 35 H 1.08999 * 109.47417 * 5.03540 * 15 14 13 36 36 H 0.96997 * 120.00075 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6939 -1.2020 5 7 2.3993 -1.2294 -2.1296 6 6 2.0401 -0.7213 1.2491 7 7 1.6525 0.0353 2.4424 8 6 1.9965 -0.4132 3.6659 9 8 2.6281 -1.4460 3.7794 10 7 1.6404 0.2830 4.7635 11 6 1.9978 -0.1838 6.0362 12 6 2.7224 -1.3544 6.3119 13 6 2.8603 -1.4507 7.6538 14 7 2.2487 -0.3840 8.2104 15 6 2.1585 -0.0948 9.6437 16 6 2.7019 1.2849 9.9129 17 1 3.0766 1.8862 9.0978 18 6 2.7207 1.7795 11.1997 19 7 3.1955 2.9832 11.4347 20 14 2.0720 0.7397 12.6095 21 1 3.1776 -0.0765 13.1722 22 1 1.5236 1.6263 13.6670 23 1 0.9991 -0.1574 12.1101 24 7 1.7144 0.3974 7.1780 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.1264 -0.7995 1.2054 29 1 1.6054 -1.7198 1.2951 30 1 1.1489 0.8593 2.3517 31 1 1.1362 1.1067 4.6729 32 1 3.1029 -2.0534 5.5819 33 1 3.3702 -2.2404 8.1856 34 1 1.1162 -0.1426 9.9591 35 1 2.7406 -0.8294 10.2000 36 1 3.2084 3.3313 12.3400 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531546471.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:18 Heat of formation + Delta-G solvation = 84.856252 kcal Electronic energy + Delta-G solvation = -19985.146962 eV Core-core repulsion = 16699.960672 eV Total energy + Delta-G solvation = -3285.186291 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.83430 -39.78202 -37.94675 -35.79402 -34.74272 -33.39438 -32.71356 -31.13117 -29.39744 -27.51500 -26.75626 -23.91882 -22.60703 -21.65087 -20.55177 -19.94738 -18.57632 -17.44358 -17.10790 -16.75823 -16.10296 -15.85409 -15.19048 -14.91757 -14.68702 -14.39589 -13.87984 -13.75674 -13.54828 -13.31301 -13.05325 -12.96191 -12.53833 -12.32869 -12.28259 -12.16180 -11.80870 -11.57927 -11.16924 -10.79299 -10.66115 -10.16667 -10.01065 -9.80551 -9.53844 -9.39504 -8.76954 -8.18527 -7.49437 -6.23842 -4.26054 2.04220 2.32058 2.44300 2.56970 3.02108 3.14966 3.21656 3.22573 3.30843 3.61988 3.76352 4.11440 4.22467 4.25035 4.31519 4.53570 5.04049 5.09816 5.11877 5.26987 5.37175 5.47856 5.57599 5.68486 6.04662 6.15807 6.31912 6.45424 6.54693 6.70190 6.89006 7.08608 7.27175 7.41124 7.80158 7.84328 8.33537 8.49282 8.57863 8.86023 9.31266 10.88851 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.048505 B = 0.002747 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.122655 B =10190.174532 C =10430.002052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.005 4.005 3 H 0.123 0.877 4 C 0.213 3.787 5 N -0.424 5.424 6 C 0.148 3.852 7 N -0.743 5.743 8 C 0.716 3.284 9 O -0.565 6.565 10 N -0.642 5.642 11 C 0.278 3.722 12 C -0.282 4.282 13 C 0.051 3.949 14 N -0.320 5.320 15 C 0.232 3.768 16 C -0.534 4.534 17 H 0.086 0.914 18 C 0.076 3.924 19 N -0.888 5.888 20 Si 0.873 3.127 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.264 1.264 24 N -0.299 5.299 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.399 0.601 31 H 0.408 0.592 32 H 0.163 0.837 33 H 0.168 0.832 34 H 0.042 0.958 35 H 0.049 0.951 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.320 -5.201 -18.362 20.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 H 0.141 0.859 4 C -0.106 4.106 5 N -0.099 5.099 6 C 0.022 3.978 7 N -0.401 5.401 8 C 0.415 3.585 9 O -0.440 6.440 10 N -0.292 5.292 11 C 0.023 3.977 12 C -0.313 4.313 13 C -0.099 4.099 14 N -0.102 5.102 15 C 0.113 3.887 16 C -0.572 4.572 17 H 0.104 0.896 18 C -0.128 4.128 19 N -0.525 5.525 20 Si 0.699 3.301 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.189 1.189 24 N -0.130 5.130 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.234 0.766 31 H 0.243 0.757 32 H 0.180 0.820 33 H 0.186 0.814 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.690 -5.820 -18.829 20.513 hybrid contribution -0.470 0.072 0.783 0.916 sum -6.160 -5.748 -18.046 19.916 Atomic orbital electron populations 1.21882 0.91229 1.03968 1.03662 1.19016 0.97768 0.99689 0.86246 0.85900 1.28726 0.93554 0.93882 0.94438 1.81272 1.08419 1.08801 1.11432 1.21078 1.01020 0.95033 0.80654 1.44843 1.62164 1.29042 1.04062 1.15524 0.79975 0.83264 0.79772 1.90890 1.43936 1.24216 1.84934 1.41328 1.58460 1.27441 1.01929 1.18773 0.99835 0.94659 0.84402 1.21532 1.12647 1.02222 0.94940 1.22559 0.99696 0.93620 0.93993 1.48587 1.39473 1.15368 1.06776 1.20039 0.98487 0.99184 0.70979 1.21110 1.42256 0.98329 0.95487 0.89638 1.24835 0.94589 0.95017 0.98355 1.69871 1.45032 1.16228 1.21404 0.86908 0.79882 0.80708 0.82612 1.19718 1.20563 1.18855 1.77385 1.24528 1.18230 0.92854 0.91209 0.90205 0.91246 0.90294 0.90181 0.76573 0.75676 0.81988 0.81430 0.94058 0.93336 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.36 9.02 37.16 0.34 -0.02 16 2 C -0.01 -0.02 2.80 -93.40 -0.26 -0.28 16 3 H 0.12 0.15 8.14 -51.93 -0.42 -0.27 16 4 C 0.21 1.50 14.65 -20.76 -0.30 1.19 16 5 N -0.42 -4.44 18.54 42.15 0.78 -3.66 16 6 C 0.15 0.90 5.02 -4.04 -0.02 0.88 16 7 N -0.74 -5.22 5.29 -65.22 -0.34 -5.56 16 8 C 0.72 9.04 8.53 -86.92 -0.74 8.30 16 9 O -0.56 -9.27 13.47 5.29 0.07 -9.20 16 10 N -0.64 -8.89 5.46 -15.51 -0.08 -8.98 16 11 C 0.28 5.27 8.11 -154.36 -1.25 4.02 16 12 C -0.28 -5.32 9.61 -39.83 -0.38 -5.70 16 13 C 0.05 0.95 11.44 -17.24 -0.20 0.75 16 14 N -0.32 -7.08 3.67 -62.56 -0.23 -7.31 16 15 C 0.23 5.40 5.33 -5.19 -0.03 5.37 16 16 C -0.53 -14.83 9.79 -34.44 -0.34 -15.17 16 17 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 18 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 19 N -0.89 -26.32 13.96 55.43 0.77 -25.55 16 20 Si 0.87 19.86 27.47 -169.99 -4.67 15.19 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 24 N -0.30 -6.61 12.42 31.44 0.39 -6.22 16 25 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.08 0.11 7.18 -51.93 -0.37 -0.27 16 27 H 0.07 0.14 8.14 -51.93 -0.42 -0.29 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.40 1.43 7.67 -40.82 -0.31 1.12 16 31 H 0.41 4.36 8.84 -40.82 -0.36 4.00 16 32 H 0.16 2.99 5.91 -52.49 -0.31 2.68 16 33 H 0.17 2.49 8.06 -52.49 -0.42 2.07 16 34 H 0.04 0.96 7.20 -51.93 -0.37 0.58 16 35 H 0.05 1.02 7.50 -51.93 -0.39 0.63 16 36 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 320.21 15.07 4.83 4.83 Total: -1.00 -36.34 320.21 -6.02 -42.36 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -4.25 Total: 2.76 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -3.29 Total: 1.35 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: 1.29 Total: -57.28 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.07 Total: -9.20 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.67 Total: 15.19 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -36.34 -6.02 -42.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531546471.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.215 kcal (2) G-P(sol) polarization free energy of solvation -36.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds