Wall clock time and date at job start Mon Mar 30 2020 01:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47238 * 2 1 4 4 C 1.47206 * 109.46907 * 240.00289 * 2 1 3 5 5 N 2.60805 * 109.46875 * 240.00278 * 2 1 3 6 6 C 1.52997 * 109.47295 * 120.00452 * 2 1 3 7 7 N 1.46509 * 109.46837 * 294.99991 * 6 2 1 8 8 C 1.34777 * 119.99703 * 180.02562 * 7 6 2 9 9 O 1.21589 * 120.00263 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99754 * 179.97438 * 8 7 6 11 11 C 1.40193 * 119.99728 * 179.97438 * 10 8 7 12 12 C 1.40401 * 125.97600 * 0.02562 * 11 10 8 13 13 C 1.35244 * 107.86868 * 179.97438 * 12 11 10 14 14 N 1.34965 * 107.85999 * 359.97438 * 13 12 11 15 15 C 1.46493 * 125.97624 * 179.97438 * 14 13 12 16 16 C 1.50710 * 109.46991 * 125.02899 * 15 14 13 17 17 H 1.08002 * 119.99873 * 0.02562 * 16 15 14 18 18 C 1.37869 * 120.00276 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00239 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 119.99973 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46775 * 90.00171 * 20 18 16 22 22 H 1.48496 * 109.47273 * 209.99980 * 20 18 16 23 23 H 1.48500 * 109.47108 * 330.00230 * 20 18 16 24 24 N 1.31214 * 125.96986 * 179.97438 * 11 10 8 25 25 H 1.08997 * 109.47238 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47009 * 300.00234 * 1 2 3 27 27 H 1.08999 * 109.46893 * 59.99367 * 1 2 3 28 28 H 1.09000 * 109.47022 * 175.00015 * 6 2 1 29 29 H 1.08996 * 109.47225 * 54.99206 * 6 2 1 30 30 H 0.96999 * 119.99737 * 359.97438 * 7 6 2 31 31 H 0.96999 * 119.99686 * 0.02562 * 10 8 7 32 32 H 1.07998 * 126.06449 * 0.02562 * 12 11 10 33 33 H 1.08000 * 126.07086 * 180.02562 * 13 12 11 34 34 H 1.09003 * 109.47538 * 245.02631 * 15 14 13 35 35 H 1.08999 * 109.47417 * 5.03540 * 15 14 13 36 36 H 0.96997 * 120.00075 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6939 -1.2020 5 7 2.3993 -1.2294 -2.1296 6 6 2.0401 -0.7213 1.2491 7 7 1.6525 0.0353 2.4424 8 6 1.9965 -0.4132 3.6659 9 8 2.6281 -1.4460 3.7794 10 7 1.6404 0.2830 4.7635 11 6 1.9978 -0.1838 6.0362 12 6 2.7224 -1.3544 6.3119 13 6 2.8603 -1.4507 7.6538 14 7 2.2487 -0.3840 8.2104 15 6 2.1585 -0.0948 9.6437 16 6 2.7019 1.2849 9.9129 17 1 3.0766 1.8862 9.0978 18 6 2.7207 1.7795 11.1997 19 7 3.1955 2.9832 11.4347 20 14 2.0720 0.7397 12.6095 21 1 3.1776 -0.0765 13.1722 22 1 1.5236 1.6263 13.6670 23 1 0.9991 -0.1574 12.1101 24 7 1.7144 0.3974 7.1780 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.1264 -0.7995 1.2054 29 1 1.6054 -1.7198 1.2951 30 1 1.1489 0.8593 2.3517 31 1 1.1362 1.1067 4.6729 32 1 3.1029 -2.0534 5.5819 33 1 3.3702 -2.2404 8.1856 34 1 1.1162 -0.1426 9.9591 35 1 2.7406 -0.8294 10.2000 36 1 3.2084 3.3313 12.3400 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531546471.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:18 Heat of formation + Delta-G solvation = 57.605178 kcal Electronic energy + Delta-G solvation = -19986.328658 eV Core-core repulsion = 16699.960672 eV Total energy + Delta-G solvation = -3286.367986 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.18598 -40.90854 -38.58827 -36.59465 -36.02931 -35.16473 -33.63990 -32.69138 -30.90763 -28.99710 -27.52518 -24.89922 -24.03158 -22.72862 -21.86293 -21.30389 -19.55541 -19.05777 -18.18989 -18.02913 -17.22625 -16.88506 -16.31949 -15.95383 -15.92987 -15.55632 -15.24096 -14.77612 -14.50239 -14.34554 -14.19518 -13.95993 -13.79725 -13.74932 -13.44655 -12.96270 -12.63250 -12.50464 -12.31353 -12.19072 -11.92851 -11.80212 -11.57301 -11.42636 -11.09612 -10.83889 -10.19189 -9.68021 -8.97973 -8.34393 -6.44163 1.06577 1.14733 1.39400 1.42129 1.51772 1.71051 1.75605 1.77076 2.15293 2.31765 2.47172 2.88252 2.98417 3.35476 3.69703 3.96109 3.98953 4.26379 4.27857 4.65810 4.71856 4.73666 4.85861 4.90424 4.96712 4.99207 5.08336 5.18244 5.28079 5.38301 5.46695 5.88917 5.98491 6.06998 6.45837 6.53565 6.61498 6.79951 7.18004 7.20706 7.49400 8.82578 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.048505 B = 0.002747 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.122655 B =10190.174532 C =10430.002052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.009 3.991 3 H 0.158 0.842 4 C 0.241 3.759 5 N -0.488 5.488 6 C 0.147 3.853 7 N -0.714 5.714 8 C 0.714 3.286 9 O -0.603 6.603 10 N -0.635 5.635 11 C 0.286 3.714 12 C -0.293 4.293 13 C 0.058 3.942 14 N -0.347 5.347 15 C 0.239 3.761 16 C -0.544 4.544 17 H 0.027 0.973 18 C 0.014 3.986 19 N -0.943 5.943 20 Si 0.954 3.046 21 H -0.255 1.255 22 H -0.282 1.282 23 H -0.239 1.239 24 N -0.349 5.349 25 H 0.060 0.940 26 H 0.097 0.903 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.420 0.580 31 H 0.423 0.577 32 H 0.168 0.832 33 H 0.208 0.792 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.480 -6.320 -18.243 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 H 0.175 0.825 4 C -0.077 4.077 5 N -0.164 5.164 6 C 0.022 3.978 7 N -0.373 5.373 8 C 0.413 3.587 9 O -0.480 6.480 10 N -0.287 5.287 11 C 0.030 3.970 12 C -0.324 4.324 13 C -0.090 4.090 14 N -0.129 5.129 15 C 0.120 3.880 16 C -0.582 4.582 17 H 0.046 0.954 18 C -0.185 4.185 19 N -0.582 5.582 20 Si 0.775 3.225 21 H -0.179 1.179 22 H -0.207 1.207 23 H -0.162 1.162 24 N -0.179 5.179 25 H 0.079 0.921 26 H 0.115 0.885 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.259 0.741 31 H 0.260 0.740 32 H 0.185 0.815 33 H 0.224 0.776 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.880 -6.913 -18.794 21.174 hybrid contribution -0.077 0.480 0.562 0.743 sum -6.958 -6.433 -18.232 20.548 Atomic orbital electron populations 1.21930 0.89890 1.03884 1.05033 1.19131 0.98528 1.00388 0.83172 0.82500 1.29288 0.91819 0.92430 0.94191 1.81302 1.10605 1.10850 1.13658 1.21115 1.00586 0.95088 0.81046 1.44584 1.60907 1.29451 1.02316 1.15708 0.79639 0.82730 0.80635 1.90860 1.45641 1.25924 1.85608 1.41344 1.58586 1.28137 1.00649 1.19118 0.98331 0.94198 0.85399 1.21731 1.12995 1.02443 0.95251 1.23229 0.98247 0.93245 0.94252 1.48466 1.41318 1.16680 1.06406 1.19864 0.98683 0.97001 0.72487 1.21239 1.42451 1.00303 0.94250 0.95412 1.25912 0.94513 0.96371 1.01720 1.70049 1.46902 1.18768 1.22442 0.85629 0.80150 0.78924 0.77753 1.17905 1.20733 1.16173 1.77299 1.26777 1.19938 0.93922 0.92109 0.88454 0.90272 0.91254 0.90922 0.74085 0.73972 0.81502 0.77556 0.93665 0.90231 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.26 9.02 71.98 0.65 0.39 16 2 C 0.01 0.04 2.80 -12.60 -0.04 0.00 16 3 H 0.16 -0.29 8.14 -2.39 -0.02 -0.31 16 4 C 0.24 3.05 14.65 89.44 1.31 4.36 16 5 N -0.49 -10.11 18.54 20.01 0.37 -9.74 16 6 C 0.15 1.49 5.02 86.38 0.43 1.93 16 7 N -0.71 -8.23 5.29 -478.52 -2.53 -10.76 16 8 C 0.71 16.97 8.53 179.05 1.53 18.50 16 9 O -0.60 -19.25 13.47 -4.00 -0.05 -19.30 16 10 N -0.64 -16.93 5.46 -321.23 -1.75 -18.68 16 11 C 0.29 10.74 8.11 133.31 1.08 11.83 16 12 C -0.29 -10.79 9.61 22.11 0.21 -10.58 16 13 C 0.06 2.09 11.44 83.52 0.96 3.05 16 14 N -0.35 -15.17 3.67 -351.84 -1.29 -16.46 16 15 C 0.24 10.88 5.33 85.64 0.46 11.34 16 16 C -0.54 -30.94 9.79 25.60 0.25 -30.69 16 17 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 18 C 0.01 0.75 5.47 84.65 0.46 1.22 16 19 N -0.94 -57.47 13.96 21.44 0.30 -57.17 16 20 Si 0.95 40.14 27.47 68.60 1.88 42.03 16 21 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.24 -9.01 6.54 99.48 0.65 -8.36 16 24 N -0.35 -15.56 12.42 -54.43 -0.68 -16.24 16 25 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 26 H 0.10 -0.13 7.18 -2.39 -0.02 -0.14 16 27 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.42 1.52 7.67 -92.71 -0.71 0.81 16 31 H 0.42 8.46 8.84 -92.71 -0.82 7.64 16 32 H 0.17 6.01 5.91 -2.91 -0.02 6.00 16 33 H 0.21 5.49 8.06 -2.91 -0.02 5.47 16 34 H 0.05 2.01 7.20 -2.39 -0.02 1.99 16 35 H 0.08 3.11 7.50 -2.39 -0.02 3.09 16 36 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -83.97 320.21 3.11 -80.86 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -0.45 Total: 14.13 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: 7.30 Total: 11.34 kcal Atomic # 7 Polarization: -123.47 SS G_CDS: -5.58 Total: -129.05 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.05 Total: -19.30 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 1.88 Total: 42.03 kcal Total: -83.97 3.11 -80.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531546471.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.469 kcal (2) G-P(sol) polarization free energy of solvation -83.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds