Wall clock time and date at job start Mon Mar 30 2020 01:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47004 * 2 1 4 4 C 1.50705 * 109.47091 * 119.99344 * 2 1 3 5 5 O 1.21284 * 119.99700 * 93.30698 * 4 2 1 6 6 N 1.34775 * 120.00212 * 273.30503 * 4 2 1 7 7 C 1.47418 * 125.64930 * 354.54330 * 6 4 2 8 8 C 1.54913 * 104.83449 * 155.90388 * 7 6 4 9 9 C 1.55160 * 101.57738 * 37.00676 * 8 7 6 10 10 O 1.42904 * 110.71570 * 82.86411 * 9 8 7 11 11 C 1.50697 * 110.71900 * 205.95428 * 9 8 7 12 12 H 1.08002 * 119.99377 * 116.16282 * 11 9 8 13 13 C 1.37879 * 120.00397 * 296.16150 * 11 9 8 14 14 N 1.31515 * 119.99879 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 120.00197 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46947 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47318 * 119.99744 * 15 13 11 18 18 H 1.48497 * 109.47153 * 240.00195 * 15 13 11 19 19 C 1.47019 * 125.64628 * 174.58109 * 6 4 2 20 20 C 1.52998 * 109.47281 * 239.99604 * 2 1 3 21 21 C 1.53000 * 109.46712 * 64.99885 * 20 2 1 22 22 F 1.39899 * 109.46887 * 184.99978 * 20 2 1 23 23 F 1.39896 * 109.47142 * 305.00117 * 20 2 1 24 24 H 1.09003 * 109.47389 * 304.07151 * 1 2 3 25 25 H 1.08998 * 109.47041 * 64.07562 * 1 2 3 26 26 H 1.09004 * 109.46945 * 184.07837 * 1 2 3 27 27 H 1.09003 * 110.36644 * 37.06661 * 7 6 4 28 28 H 1.08996 * 110.36715 * 274.74355 * 7 6 4 29 29 H 1.08996 * 111.00435 * 278.93761 * 8 7 6 30 30 H 1.08999 * 111.04027 * 155.09458 * 8 7 6 31 31 H 0.96696 * 114.00251 * 61.45737 * 10 9 8 32 32 H 0.96994 * 120.00007 * 179.97438 * 14 13 11 33 33 H 1.09002 * 109.88313 * 61.61036 * 19 6 4 34 34 H 1.09002 * 109.88714 * 300.44260 * 19 6 4 35 35 H 1.09001 * 109.47018 * 60.00421 * 21 20 2 36 36 H 1.09009 * 109.46876 * 179.97438 * 21 20 2 37 37 H 1.08993 * 109.47607 * 299.99647 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.2916 -1.8942 1.1840 6 7 2.1935 -0.0300 2.3828 7 6 2.0269 1.4250 2.5520 8 6 1.7029 1.6149 4.0549 9 6 2.6054 0.5343 4.7070 10 8 3.9391 1.0208 4.8700 11 6 2.0360 0.0917 6.0303 12 1 1.7093 -0.9291 6.1631 13 6 1.9321 0.9899 7.0712 14 7 2.3304 2.2328 6.9095 15 14 1.2256 0.4415 8.7111 16 1 0.8550 -0.9946 8.6350 17 1 2.2414 0.6341 9.7770 18 1 0.0193 1.2485 9.0252 19 6 2.5655 -0.6158 3.6789 20 6 2.0400 -0.7213 -1.2492 21 6 1.6352 0.0688 -2.4952 22 9 3.4343 -0.8217 -1.1930 23 9 1.4822 -2.0029 -1.3080 24 1 -0.3634 0.5757 0.8513 25 1 -0.3633 0.4493 -0.9242 26 1 -0.3633 -1.0251 0.0731 27 1 1.2022 1.7864 1.9376 28 1 2.9494 1.9450 2.2942 29 1 0.6499 1.4175 4.2556 30 1 1.9823 2.6130 4.3924 31 1 4.0082 1.7937 5.4469 32 1 2.2570 2.8648 7.6416 33 1 3.5478 -1.0826 3.6065 34 1 1.8226 -1.3551 3.9785 35 1 2.0699 1.0674 -2.4494 36 1 1.9990 -0.4448 -3.3852 37 1 0.5490 0.1470 -2.5390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592853045.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:25 Heat of formation + Delta-G solvation = -191.631287 kcal Electronic energy + Delta-G solvation = -22956.451217 eV Core-core repulsion = 19176.293589 eV Total energy + Delta-G solvation = -3780.157628 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.81017 -46.78526 -39.65441 -37.39351 -34.71562 -34.28541 -32.22606 -30.28448 -29.45479 -28.33045 -25.83343 -24.87496 -22.65082 -21.38634 -19.73715 -18.89619 -17.58630 -17.27195 -16.98292 -16.59845 -15.83390 -15.17741 -14.94392 -14.57967 -14.40081 -14.09301 -13.61454 -13.37197 -13.09453 -13.02713 -12.86766 -12.80604 -12.34727 -12.20034 -12.08608 -12.01628 -11.65401 -11.52437 -11.44172 -11.36368 -10.94307 -10.79546 -10.67169 -10.47929 -10.16260 -9.50429 -9.34240 -8.70589 -8.26452 -8.07038 -6.33165 -4.40075 2.89250 3.16518 3.25252 3.27199 3.32851 3.75945 3.99623 4.23786 4.35971 4.38771 4.86192 4.91732 4.96555 4.99919 5.28412 5.42409 5.43576 5.54716 5.55725 5.66439 5.72222 5.83468 5.92344 6.02530 6.15472 6.42435 6.63951 6.83462 6.90441 7.22909 7.28658 7.69636 7.97766 8.01545 8.51283 8.62916 9.27514 9.37989 10.74928 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.037152 B = 0.004481 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.481190 B = 6246.517432 C = 6289.206930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.153 4.153 3 H 0.116 0.884 4 C 0.526 3.474 5 O -0.537 6.537 6 N -0.605 5.605 7 C 0.092 3.908 8 C -0.136 4.136 9 C 0.247 3.753 10 O -0.585 6.585 11 C -0.534 4.534 12 H 0.065 0.935 13 C 0.073 3.927 14 N -0.897 5.897 15 Si 0.903 3.097 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.282 1.282 19 C 0.123 3.877 20 C 0.307 3.693 21 C -0.195 4.195 22 F -0.197 7.197 23 F -0.188 7.188 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.384 0.616 32 H 0.268 0.732 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.369 2.614 -14.246 15.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.176 4.176 3 H 0.134 0.866 4 C 0.313 3.687 5 O -0.414 6.414 6 N -0.338 5.338 7 C -0.031 4.031 8 C -0.175 4.175 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.572 4.572 12 H 0.083 0.917 13 C -0.130 4.130 14 N -0.537 5.537 15 Si 0.731 3.269 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.208 1.208 19 C 0.001 3.999 20 C 0.270 3.730 21 C -0.252 4.252 22 F -0.178 7.178 23 F -0.169 7.169 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.234 0.766 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.063 1.568 -14.632 15.266 hybrid contribution -0.396 0.324 1.348 1.442 sum -4.459 1.891 -13.283 14.139 Atomic orbital electron populations 1.21760 0.90419 1.04256 1.03549 1.22404 1.00234 1.02041 0.92873 0.86631 1.19644 0.78765 0.86991 0.83311 1.90735 1.51143 1.15349 1.84178 1.48577 1.67032 1.09241 1.08906 1.22566 0.99947 0.80366 1.00184 1.23320 1.01272 1.02673 0.90189 1.19461 0.80595 0.87809 0.91425 1.86133 1.29153 1.52068 1.72092 1.21563 1.41761 0.97522 0.96374 0.91672 1.24976 0.94239 0.94625 0.99113 1.69647 1.47544 1.03479 1.33027 0.86353 0.78664 0.79038 0.82891 1.19562 1.20723 1.20816 1.22095 0.99915 0.97067 0.80821 1.20684 0.75059 0.80937 0.96320 1.22830 1.04586 1.01631 0.96166 1.93030 1.30798 1.96505 1.97462 1.93032 1.84777 1.41759 1.97309 0.90490 0.90767 0.90854 0.92096 0.91760 0.91360 0.89389 0.76557 0.92207 0.91940 0.90946 0.89202 0.89820 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.78 37.16 0.33 -1.22 16 2 C -0.15 -2.09 1.74 -91.77 -0.16 -2.25 16 3 H 0.12 1.30 7.15 -51.93 -0.37 0.93 16 4 C 0.53 10.04 6.59 -10.98 -0.07 9.97 16 5 O -0.54 -12.28 15.66 5.55 0.09 -12.20 16 6 N -0.60 -11.92 3.33 -170.53 -0.57 -12.49 16 7 C 0.09 1.59 6.36 -2.53 -0.02 1.57 16 8 C -0.14 -2.81 5.57 -24.58 -0.14 -2.95 16 9 C 0.25 5.89 0.85 -89.94 -0.08 5.81 16 10 O -0.59 -14.63 13.06 -35.23 -0.46 -15.09 16 11 C -0.53 -13.81 8.22 -34.44 -0.28 -14.09 16 12 H 0.07 1.70 7.56 -52.49 -0.40 1.31 16 13 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 14 N -0.90 -22.60 10.69 55.43 0.59 -22.01 16 15 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 C 0.12 2.78 6.23 -3.07 -0.02 2.76 16 20 C 0.31 4.20 1.54 -26.73 -0.04 4.16 16 21 C -0.19 -1.63 9.14 37.16 0.34 -1.29 16 22 F -0.20 -3.26 16.49 2.25 0.04 -3.22 16 23 F -0.19 -3.04 15.37 2.25 0.03 -3.01 16 24 H 0.08 0.82 7.61 -51.93 -0.39 0.42 16 25 H 0.07 0.56 6.38 -51.93 -0.33 0.22 16 26 H 0.07 0.90 7.82 -51.93 -0.41 0.50 16 27 H 0.06 0.84 6.85 -51.93 -0.36 0.48 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 30 H 0.09 1.88 7.64 -51.93 -0.40 1.49 16 31 H 0.38 9.54 7.28 45.56 0.33 9.87 16 32 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 33 H 0.06 1.50 8.07 -51.93 -0.42 1.08 16 34 H 0.07 1.67 7.66 -51.93 -0.40 1.27 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 37 H 0.09 0.60 6.48 -51.93 -0.34 0.26 16 LS Contribution 307.02 15.07 4.63 4.63 Total: -1.00 -30.21 307.02 -5.20 -35.41 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -4.29 Total: 8.76 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -0.23 Total: 4.22 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.03 Total: -34.49 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.37 Total: -27.28 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.07 Total: -6.23 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.21 -5.20 -35.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853045.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.223 kcal (2) G-P(sol) polarization free energy of solvation -30.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds