Wall clock time and date at job start Mon Mar 30 2020 02:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 119.99869 * 2 1 4 4 C 1.50703 * 109.47237 * 89.99622 * 3 2 1 5 5 H 1.07994 * 119.99597 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00090 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00127 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99935 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47016 * 90.00400 * 8 6 4 10 10 H 1.48506 * 109.47010 * 210.00633 * 8 6 4 11 11 H 1.48501 * 109.47192 * 330.00497 * 8 6 4 12 12 C 1.34775 * 120.00121 * 180.27868 * 2 1 3 13 13 O 1.21281 * 119.99828 * 184.86698 * 12 2 1 14 14 C 1.50697 * 119.99949 * 4.86128 * 12 2 1 15 15 H 1.09003 * 110.26897 * 336.89487 * 14 12 2 16 16 C 1.54346 * 110.30057 * 214.82623 * 14 12 2 17 17 C 1.54347 * 102.39212 * 214.72081 * 16 14 12 18 18 C 1.51377 * 105.17093 * 26.35214 * 17 16 14 19 19 C 1.38461 * 130.36871 * 162.80412 * 18 17 16 20 20 C 1.38323 * 120.19598 * 180.02562 * 19 18 17 21 21 F 1.35100 * 120.05973 * 179.97438 * 20 19 18 22 22 C 1.38472 * 119.88234 * 0.02562 * 20 19 18 23 23 C 1.38061 * 119.90704 * 359.97438 * 22 20 19 24 24 C 1.38379 * 120.30182 * 359.90789 * 23 22 20 25 25 H 1.09000 * 109.47126 * 264.43242 * 1 2 3 26 26 H 1.08997 * 109.47036 * 24.43684 * 1 2 3 27 27 H 1.09004 * 109.46826 * 144.43419 * 1 2 3 28 28 H 1.09004 * 109.47337 * 210.00183 * 3 2 1 29 29 H 1.09001 * 109.47099 * 329.99940 * 3 2 1 30 30 H 0.97002 * 119.99892 * 179.97438 * 7 6 4 31 31 H 1.09000 * 110.82310 * 332.93965 * 16 14 12 32 32 H 1.09001 * 110.82838 * 96.30020 * 16 14 12 33 33 H 1.08997 * 110.30804 * 145.27543 * 17 16 14 34 34 H 1.09001 * 110.30592 * 267.33396 * 17 16 14 35 35 H 1.08002 * 119.89805 * 0.02641 * 19 18 17 36 36 H 1.08000 * 120.05163 * 180.02562 * 22 20 19 37 37 H 1.08004 * 119.87268 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0980 1.0959 2.2416 6 6 3.1268 2.8775 1.6728 7 7 3.5542 3.6177 0.6732 8 14 3.4386 3.4165 3.4339 9 1 4.7336 2.8589 3.9003 10 1 3.4868 4.8994 3.4966 11 1 2.3434 2.9195 4.3050 12 6 2.1389 -1.1672 -0.0057 13 8 3.3485 -1.1694 0.0834 14 6 1.3895 -2.4693 -0.1226 15 1 0.3593 -2.3433 0.2103 16 6 2.0898 -3.5665 0.7068 17 6 1.8508 -4.8302 -0.1466 18 6 1.6899 -4.3259 -1.5648 19 6 1.7692 -5.0009 -2.7711 20 6 1.5845 -4.3217 -3.9618 21 9 1.6631 -4.9829 -5.1373 22 6 1.3200 -2.9625 -3.9469 23 6 1.2410 -2.2898 -2.7439 24 6 1.4230 -2.9678 -1.5515 25 1 -0.3633 -0.0997 1.0228 26 1 -0.3633 0.9356 -0.4251 27 1 -0.3633 -0.8360 -0.5978 28 1 3.1500 1.1385 -0.5139 29 1 1.6084 2.0284 -0.5138 30 1 4.0310 4.4436 0.8504 31 1 3.1557 -3.3593 0.8020 32 1 1.6267 -3.6651 1.6886 33 1 2.7077 -5.5003 -0.0785 34 1 0.9450 -5.3412 0.1797 35 1 1.9759 -6.0609 -2.7823 36 1 1.1750 -2.4296 -4.8750 37 1 1.0350 -1.2296 -2.7330 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596910727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:00 Heat of formation + Delta-G solvation = -76.820500 kcal Electronic energy + Delta-G solvation = -21234.629931 eV Core-core repulsion = 17890.220097 eV Total energy + Delta-G solvation = -3344.409834 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.92839 -41.73407 -39.87426 -36.75068 -36.17755 -34.73560 -32.65146 -30.19241 -29.81189 -28.54396 -27.25600 -25.07374 -23.98044 -22.47238 -22.08452 -19.85081 -18.71881 -18.22885 -18.06490 -17.58457 -17.05315 -16.87744 -16.59117 -16.20429 -15.68999 -15.46401 -14.92585 -14.60089 -14.23988 -14.08441 -13.92279 -13.78580 -13.55882 -13.43874 -13.22227 -12.85522 -12.81132 -12.63215 -12.52256 -12.37051 -12.19370 -11.88541 -11.72232 -11.63724 -10.69744 -10.64952 -9.94224 -9.44952 -9.43563 -8.22628 -6.37296 0.05776 0.20215 1.36600 1.39752 1.49329 1.75838 2.27203 2.41559 2.58176 3.05943 3.07178 3.36894 3.53584 3.76897 3.92203 3.97862 4.12068 4.20728 4.30170 4.42722 4.58777 4.62936 4.70428 4.75722 4.88037 4.92561 5.00662 5.05224 5.08477 5.09956 5.20442 5.24769 5.31569 5.50110 5.56111 5.83197 5.85820 6.05740 6.68758 6.77042 7.27828 7.46248 8.84466 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.029276 B = 0.004290 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.176720 B = 6525.607060 C = 6960.878127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.608 5.608 3 C 0.260 3.740 4 C -0.541 4.541 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.930 5.930 8 Si 0.967 3.033 9 H -0.281 1.281 10 H -0.275 1.275 11 H -0.260 1.260 12 C 0.506 3.494 13 O -0.592 6.592 14 C -0.064 4.064 15 H 0.134 0.866 16 C -0.111 4.111 17 C -0.069 4.069 18 C -0.063 4.063 19 C -0.141 4.141 20 C 0.088 3.912 21 F -0.143 7.143 22 C -0.156 4.156 23 C -0.084 4.084 24 C -0.106 4.106 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.093 0.907 28 H -0.006 1.006 29 H 0.025 0.975 30 H 0.267 0.733 31 H 0.059 0.941 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.159 0.841 36 H 0.152 0.848 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.361 -17.694 -4.412 20.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.339 5.339 3 C 0.138 3.862 4 C -0.580 4.580 5 H 0.072 0.928 6 C -0.192 4.192 7 N -0.570 5.570 8 Si 0.792 3.208 9 H -0.207 1.207 10 H -0.200 1.200 11 H -0.184 1.184 12 C 0.294 3.706 13 O -0.473 6.473 14 C -0.084 4.084 15 H 0.151 0.849 16 C -0.148 4.148 17 C -0.105 4.105 18 C -0.063 4.063 19 C -0.160 4.160 20 C 0.069 3.931 21 F -0.121 7.121 22 C -0.174 4.174 23 C -0.103 4.103 24 C -0.107 4.107 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.111 0.889 28 H 0.012 0.988 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.124 0.876 33 H 0.114 0.886 34 H 0.137 0.863 35 H 0.177 0.823 36 H 0.169 0.831 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.677 -17.520 -4.458 20.505 hybrid contribution 0.622 1.023 0.248 1.223 sum -9.054 -16.497 -4.209 19.284 Atomic orbital electron populations 1.21963 0.77986 1.03865 1.02657 1.48195 1.08294 1.06315 1.71047 1.18782 0.90945 0.80368 0.96062 1.21701 1.36725 1.06461 0.93079 0.92822 1.25865 0.94908 0.96439 1.01985 1.70052 1.38984 1.14866 1.33066 0.85418 0.78663 0.77521 0.79231 1.20713 1.19987 1.18449 1.21063 0.87616 0.86129 0.75766 1.90628 1.16963 1.87758 1.51935 1.20992 1.02021 0.91824 0.93600 0.84861 1.22379 1.00999 0.92296 0.99171 1.21121 1.04768 0.97144 0.87501 1.20702 0.96270 0.93294 0.96021 1.20722 1.03791 1.01978 0.89479 1.17641 1.03385 0.90765 0.81299 1.91484 1.93997 1.80948 1.45700 1.21153 1.03711 0.92964 0.99601 1.20582 0.98567 1.00186 0.90930 1.20342 1.01714 0.95263 0.93382 0.91830 0.90754 0.88895 0.98796 0.95672 0.92430 0.92212 0.87602 0.88613 0.86319 0.82344 0.83054 0.85659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.25 9.88 127.77 1.26 3.52 16 2 N -0.61 -25.59 2.86 -851.12 -2.43 -28.02 16 3 C 0.26 14.08 5.17 85.63 0.44 14.52 16 4 C -0.54 -31.36 9.39 25.60 0.24 -31.12 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.40 5.46 84.65 0.46 0.86 16 7 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 8 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 9 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 12 C 0.51 21.01 6.53 87.66 0.57 21.58 16 13 O -0.59 -31.23 15.51 -3.03 -0.05 -31.27 16 14 C -0.06 -1.79 2.52 -11.62 -0.03 -1.82 16 15 H 0.13 2.89 6.22 -2.39 -0.01 2.88 16 16 C -0.11 -2.69 6.54 31.51 0.21 -2.48 16 17 C -0.07 -1.20 6.77 30.52 0.21 -0.99 16 18 C -0.06 -1.41 6.14 -19.56 -0.12 -1.53 16 19 C -0.14 -2.96 10.02 22.34 0.22 -2.73 16 20 C 0.09 2.07 7.30 22.35 0.16 2.23 16 21 F -0.14 -3.35 17.27 44.97 0.78 -2.57 16 22 C -0.16 -3.73 10.03 22.28 0.22 -3.51 16 23 C -0.08 -2.27 9.76 22.26 0.22 -2.05 16 24 C -0.11 -2.86 5.60 -19.58 -0.11 -2.97 16 25 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.07 2.13 7.83 -2.39 -0.02 2.11 16 27 H 0.09 2.00 6.49 -2.39 -0.02 1.99 16 28 H -0.01 -0.38 7.49 -2.39 -0.02 -0.40 16 29 H 0.03 1.37 7.86 -2.39 -0.02 1.36 16 30 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 31 H 0.06 1.88 7.05 -2.39 -0.02 1.87 16 32 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 36 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 37 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -75.39 316.68 5.65 -69.74 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 1.08 Total: 7.92 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 3.96 Total: -6.50 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -2.15 Total: -84.35 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.05 Total: -31.27 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.78 Total: -2.57 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -75.39 5.65 -69.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596910727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.078 kcal (2) G-P(sol) polarization free energy of solvation -75.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds