Wall clock time and date at job start Mon Mar 30 2020 01:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 H 1.08990 * 110.26719 * 60.62044 * 15 13 12 17 17 C 1.54344 * 110.30052 * 182.79971 * 15 13 12 18 18 C 1.54341 * 102.39631 * 145.27762 * 17 15 13 19 19 C 1.51381 * 105.16380 * 333.64311 * 18 17 15 20 20 C 1.38464 * 130.35911 * 197.15843 * 19 18 17 21 21 C 1.38322 * 120.19618 * 180.02562 * 20 19 18 22 22 F 1.35106 * 120.06319 * 180.02562 * 21 20 19 23 23 C 1.38476 * 119.87628 * 0.02562 * 21 20 19 24 24 C 1.38063 * 119.91060 * 359.97438 * 23 21 20 25 25 C 1.38228 * 109.76298 * 17.19758 * 19 18 17 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 31 31 H 1.09002 * 110.82183 * 263.50420 * 17 15 13 32 32 H 1.09003 * 110.82066 * 27.05419 * 17 15 13 33 33 H 1.08996 * 110.30769 * 214.72174 * 18 17 15 34 34 H 1.08995 * 110.30135 * 92.56072 * 18 17 15 35 35 H 1.08001 * 119.90151 * 0.02975 * 20 19 18 36 36 H 1.08002 * 120.04139 * 179.97438 * 23 21 20 37 37 H 1.08001 * 119.87045 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 1 1.9788 -1.5469 -3.8509 17 6 2.7750 0.2625 -4.7643 18 6 4.0135 -0.2706 -5.5153 19 6 4.8350 -0.9877 -4.4652 20 6 6.1631 -1.3792 -4.4788 21 6 6.7071 -2.0323 -3.3876 22 9 8.0034 -2.4126 -3.4035 23 6 5.9206 -2.2956 -2.2787 24 6 4.5964 -1.9051 -2.2655 25 6 4.0509 -1.2509 -3.3577 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 0.7089 1.1611 3.4845 30 1 2.2490 -1.6317 -1.1527 31 1 1.8903 0.2241 -5.3999 32 1 2.9486 1.2753 -4.4008 33 1 4.5824 0.5558 -5.9412 34 1 3.7108 -0.9658 -6.2983 35 1 6.7761 -1.1739 -5.3440 36 1 6.3425 -2.8057 -1.4254 37 1 3.9836 -2.1105 -1.4002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596996854.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:25 Heat of formation + Delta-G solvation = -67.982988 kcal Electronic energy + Delta-G solvation = -21256.167163 eV Core-core repulsion = 17912.140553 eV Total energy + Delta-G solvation = -3344.026610 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.91367 -40.52985 -38.39419 -35.49482 -34.60584 -32.57482 -31.51267 -29.14633 -28.71847 -27.39907 -25.27575 -23.01181 -22.38859 -21.20848 -20.33145 -19.42015 -17.41447 -17.13952 -16.40596 -16.06597 -15.84942 -15.55849 -15.20106 -14.51605 -14.38490 -14.01955 -13.53593 -13.47802 -12.93264 -12.88739 -12.43659 -12.40124 -11.91975 -11.78647 -11.55705 -11.46458 -11.07284 -10.95834 -10.89006 -10.77988 -10.70556 -10.33850 -10.25950 -9.19464 -9.06511 -8.95635 -8.57931 -8.38506 -7.94134 -6.14373 -4.23869 1.08887 1.19276 3.22608 3.27737 3.30211 3.31925 3.54130 4.03609 4.04034 4.34591 4.46135 4.55159 4.86783 4.90599 5.10277 5.14574 5.18103 5.22447 5.47724 5.55871 5.66854 5.72269 5.83223 5.95165 6.05801 6.11383 6.26995 6.32458 6.50765 6.80321 6.84937 6.94253 7.12900 7.43218 7.52834 7.66271 7.89004 8.12868 8.62269 8.75087 9.07819 9.43774 10.91567 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017504 B = 0.005423 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.230644 B = 5161.708790 C = 6539.520808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.900 3.100 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.707 5.707 13 C 0.510 3.490 14 O -0.550 6.550 15 C -0.074 4.074 16 H 0.109 0.891 17 C -0.103 4.103 18 C -0.081 4.081 19 C -0.064 4.064 20 C -0.146 4.146 21 C 0.096 3.904 22 F -0.142 7.142 23 C -0.150 4.150 24 C -0.069 4.069 25 C -0.095 4.095 26 H 0.026 0.974 27 H 0.090 0.910 28 H 0.014 0.986 29 H 0.264 0.736 30 H 0.386 0.614 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.711 -6.482 -14.049 16.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.211 1.211 12 N -0.356 5.356 13 C 0.294 3.706 14 O -0.428 6.428 15 C -0.095 4.095 16 H 0.127 0.873 17 C -0.141 4.141 18 C -0.118 4.118 19 C -0.065 4.065 20 C -0.165 4.165 21 C 0.077 3.923 22 F -0.121 7.121 23 C -0.169 4.169 24 C -0.087 4.087 25 C -0.096 4.096 26 H 0.045 0.955 27 H 0.109 0.891 28 H 0.033 0.967 29 H 0.074 0.926 30 H 0.220 0.780 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.150 0.850 36 H 0.156 0.844 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.454 -5.515 -13.897 16.285 hybrid contribution 0.698 -1.101 1.045 1.670 sum 7.151 -6.616 -12.852 16.128 Atomic orbital electron populations 1.22080 0.98465 0.99095 1.00921 1.18757 0.91021 0.94026 0.80005 0.93355 1.21190 1.32511 1.13180 0.90329 0.92156 1.24883 0.94804 0.94914 0.99044 1.69902 1.35842 1.22364 1.23890 0.86466 0.79173 0.79301 0.82273 1.20532 1.19843 1.21056 1.46647 1.64914 1.13399 1.10620 1.20158 0.78438 0.87438 0.84567 1.90644 1.51364 1.15960 1.84864 1.20968 0.93709 0.99098 0.95718 0.87286 1.22250 0.97324 1.00001 0.94488 1.21123 0.95303 0.99237 0.96174 1.20375 0.92541 0.97280 0.96256 1.20454 0.95300 1.02158 0.98567 1.17507 0.78729 1.00118 0.95944 1.91487 1.34294 1.89374 1.96909 1.21041 0.94263 1.03485 0.98072 1.20709 0.94437 0.95855 0.97692 1.20343 0.95352 0.99188 0.94669 0.95483 0.89146 0.96654 0.92558 0.78031 0.90038 0.88853 0.90181 0.89779 0.85038 0.84369 0.84399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.26 37.16 0.34 -3.27 16 2 C 0.26 6.60 2.56 -69.09 -0.18 6.42 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -13.86 8.73 -34.44 -0.30 -14.16 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.66 11.32 55.43 0.63 -24.03 16 8 Si 0.90 20.43 29.54 -169.99 -5.02 15.40 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.71 -14.32 4.54 -54.93 -0.25 -14.57 16 13 C 0.51 9.89 7.09 -10.98 -0.08 9.82 16 14 O -0.55 -12.83 15.18 5.56 0.08 -12.74 16 15 C -0.07 -1.05 3.26 -91.88 -0.30 -1.35 16 16 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 17 C -0.10 -1.28 6.32 -25.32 -0.16 -1.44 16 18 C -0.08 -0.83 6.77 -26.85 -0.18 -1.01 16 19 C -0.06 -0.80 6.14 -104.21 -0.64 -1.44 16 20 C -0.15 -1.75 10.02 -39.47 -0.40 -2.14 16 21 C 0.10 1.25 7.30 -39.46 -0.29 0.96 16 22 F -0.14 -1.86 17.27 2.25 0.04 -1.83 16 23 C -0.15 -1.96 10.03 -39.56 -0.40 -2.36 16 24 C -0.07 -0.96 9.46 -39.55 -0.37 -1.34 16 25 C -0.09 -1.32 5.59 -104.19 -0.58 -1.90 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.39 6.75 6.49 -40.82 -0.26 6.49 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.09 1.38 7.07 -51.93 -0.37 1.02 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 37 H 0.14 1.94 5.91 -52.49 -0.31 1.63 16 LS Contribution 311.13 15.07 4.69 4.69 Total: -1.00 -30.20 311.13 -8.03 -38.23 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -4.57 Total: 6.37 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -3.62 Total: -11.52 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.38 Total: -38.60 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.08 Total: -12.74 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.20 -8.03 -38.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596996854.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.756 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds