Wall clock time and date at job start Mon Mar 30 2020 01:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 H 1.08990 * 110.26719 * 60.62044 * 15 13 12 17 17 C 1.54344 * 110.30052 * 182.79971 * 15 13 12 18 18 C 1.54341 * 102.39631 * 145.27762 * 17 15 13 19 19 C 1.51381 * 105.16380 * 333.64311 * 18 17 15 20 20 C 1.38464 * 130.35911 * 197.15843 * 19 18 17 21 21 C 1.38322 * 120.19618 * 180.02562 * 20 19 18 22 22 F 1.35106 * 120.06319 * 180.02562 * 21 20 19 23 23 C 1.38476 * 119.87628 * 0.02562 * 21 20 19 24 24 C 1.38063 * 119.91060 * 359.97438 * 23 21 20 25 25 C 1.38228 * 109.76298 * 17.19758 * 19 18 17 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 31 31 H 1.09002 * 110.82183 * 263.50420 * 17 15 13 32 32 H 1.09003 * 110.82066 * 27.05419 * 17 15 13 33 33 H 1.08996 * 110.30769 * 214.72174 * 18 17 15 34 34 H 1.08995 * 110.30135 * 92.56072 * 18 17 15 35 35 H 1.08001 * 119.90151 * 0.02975 * 20 19 18 36 36 H 1.08002 * 120.04139 * 179.97438 * 23 21 20 37 37 H 1.08001 * 119.87045 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 1 1.9788 -1.5469 -3.8509 17 6 2.7750 0.2625 -4.7643 18 6 4.0135 -0.2706 -5.5153 19 6 4.8350 -0.9877 -4.4652 20 6 6.1631 -1.3792 -4.4788 21 6 6.7071 -2.0323 -3.3876 22 9 8.0034 -2.4126 -3.4035 23 6 5.9206 -2.2956 -2.2787 24 6 4.5964 -1.9051 -2.2655 25 6 4.0509 -1.2509 -3.3577 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 0.7089 1.1611 3.4845 30 1 2.2490 -1.6317 -1.1527 31 1 1.8903 0.2241 -5.3999 32 1 2.9486 1.2753 -4.4008 33 1 4.5824 0.5558 -5.9412 34 1 3.7108 -0.9658 -6.2983 35 1 6.7761 -1.1739 -5.3440 36 1 6.3425 -2.8057 -1.4254 37 1 3.9836 -2.1105 -1.4002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596996854.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:25 Heat of formation + Delta-G solvation = -85.141680 kcal Electronic energy + Delta-G solvation = -21256.911220 eV Core-core repulsion = 17912.140553 eV Total energy + Delta-G solvation = -3344.770667 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.91853 -41.69621 -39.85197 -36.95512 -36.06685 -34.40381 -32.71133 -30.83058 -29.74385 -28.58427 -27.33543 -24.04357 -23.84446 -22.31748 -21.74979 -21.01402 -18.98614 -18.14102 -17.70924 -17.38146 -17.24674 -16.95279 -16.58749 -16.06282 -15.56160 -15.36810 -14.95398 -14.58318 -14.43220 -14.16337 -13.89558 -13.65125 -13.44015 -13.12546 -12.93734 -12.78109 -12.76885 -12.52862 -12.40899 -12.27909 -12.13843 -11.86003 -11.71013 -11.10171 -10.79877 -10.58575 -9.93002 -9.74763 -9.44551 -8.17958 -6.35225 0.07092 0.22087 1.44052 1.44871 1.54999 1.78284 2.33281 2.47791 2.68181 3.07633 3.12609 3.45614 3.48972 3.81065 3.93908 4.09775 4.16931 4.24065 4.39189 4.64038 4.66768 4.75026 4.79536 4.90694 4.93090 5.06279 5.09416 5.11033 5.14635 5.27875 5.34379 5.43782 5.50745 5.61165 5.68557 5.87146 5.90033 6.10033 6.72378 6.93931 7.31813 7.53213 8.88320 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017504 B = 0.005423 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.230644 B = 5161.708790 C = 6539.520808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H -0.004 1.004 4 C -0.545 4.545 5 H 0.073 0.927 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.970 3.030 9 H -0.270 1.270 10 H -0.264 1.264 11 H -0.288 1.288 12 N -0.703 5.703 13 C 0.505 3.495 14 O -0.595 6.595 15 C -0.063 4.063 16 H 0.138 0.862 17 C -0.104 4.104 18 C -0.071 4.071 19 C -0.063 4.063 20 C -0.142 4.142 21 C 0.088 3.912 22 F -0.144 7.144 23 C -0.158 4.158 24 C -0.083 4.083 25 C -0.113 4.113 26 H 0.041 0.959 27 H 0.066 0.934 28 H 0.013 0.987 29 H 0.265 0.735 30 H 0.402 0.598 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.158 0.842 36 H 0.148 0.852 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.735 -8.290 -15.545 19.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.166 3.834 3 H 0.014 0.986 4 C -0.583 4.583 5 H 0.091 0.909 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.794 3.206 9 H -0.196 1.196 10 H -0.188 1.188 11 H -0.214 1.214 12 N -0.352 5.352 13 C 0.292 3.708 14 O -0.476 6.476 15 C -0.084 4.084 16 H 0.156 0.844 17 C -0.141 4.141 18 C -0.108 4.108 19 C -0.063 4.063 20 C -0.161 4.161 21 C 0.069 3.931 22 F -0.122 7.122 23 C -0.176 4.176 24 C -0.101 4.101 25 C -0.114 4.114 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.032 0.968 29 H 0.074 0.926 30 H 0.238 0.762 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.134 0.866 35 H 0.176 0.824 36 H 0.166 0.834 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.493 -7.363 -15.419 18.657 hybrid contribution 0.399 -0.497 1.480 1.611 sum 7.892 -7.860 -13.939 17.842 Atomic orbital electron populations 1.21897 0.98239 0.99502 0.99605 1.18340 0.91154 0.91836 0.82025 0.98591 1.21524 1.32527 1.13479 0.90750 0.90852 1.25779 0.94902 0.95542 1.02271 1.70054 1.37053 1.23894 1.24553 0.85381 0.79023 0.78075 0.78092 1.19564 1.18817 1.21368 1.46417 1.64969 1.14030 1.09834 1.21123 0.77092 0.87044 0.85574 1.90622 1.53093 1.18189 1.85731 1.21007 0.94379 0.99791 0.93216 0.84422 1.22284 0.99709 0.97904 0.94249 1.21161 0.93711 1.00103 0.95796 1.20652 0.92617 0.96711 0.96340 1.20715 0.95346 1.01039 0.98963 1.17666 0.78683 1.00416 0.96348 1.91483 1.34391 1.89437 1.96938 1.21175 0.94058 1.03641 0.98755 1.20726 0.94891 0.96746 0.97763 1.20415 0.95376 1.00030 0.95552 0.94001 0.91571 0.96801 0.92588 0.76232 0.87790 0.91856 0.88570 0.86607 0.82434 0.83374 0.85165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.73 9.26 71.98 0.67 -6.07 16 2 C 0.27 13.94 2.56 44.24 0.11 14.05 16 3 H 0.00 -0.24 7.58 -2.39 -0.02 -0.25 16 4 C -0.54 -28.53 8.73 25.60 0.22 -28.31 16 5 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 6 C 0.02 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -52.57 11.32 21.45 0.24 -52.33 16 8 Si 0.97 41.80 29.54 68.60 2.03 43.83 16 9 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 10 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 11 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 12 N -0.70 -28.78 4.54 -446.10 -2.03 -30.80 16 13 C 0.50 19.76 7.09 87.66 0.62 20.38 16 14 O -0.59 -28.74 15.18 -3.02 -0.05 -28.79 16 15 C -0.06 -1.69 3.26 -11.61 -0.04 -1.73 16 16 H 0.14 2.89 8.14 -2.39 -0.02 2.87 16 17 C -0.10 -2.36 6.32 31.51 0.20 -2.17 16 18 C -0.07 -1.18 6.77 30.52 0.21 -0.97 16 19 C -0.06 -1.38 6.14 -19.60 -0.12 -1.50 16 20 C -0.14 -2.99 10.02 22.34 0.22 -2.76 16 21 C 0.09 2.12 7.30 22.35 0.16 2.28 16 22 F -0.14 -3.52 17.27 44.97 0.78 -2.74 16 23 C -0.16 -3.95 10.03 22.28 0.22 -3.73 16 24 C -0.08 -2.25 9.46 22.29 0.21 -2.04 16 25 C -0.11 -2.96 5.59 -19.59 -0.11 -3.07 16 26 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.07 3.66 6.07 -2.39 -0.01 3.65 16 28 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.40 13.91 6.49 -92.70 -0.60 13.30 16 31 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.06 1.85 7.07 -2.39 -0.02 1.83 16 33 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.13 3.62 5.91 -2.91 -0.02 3.60 16 Total: -1.00 -67.32 311.13 4.50 -62.82 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.50 Total: 22.37 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 3.03 Total: -14.36 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -1.78 Total: -83.13 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.05 Total: -28.79 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.78 Total: -2.74 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -67.32 4.50 -62.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596996854.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.323 kcal (2) G-P(sol) polarization free energy of solvation -67.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds