Wall clock time and date at job start Mon Mar 30 2020 01:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.99459 * 2 1 4 4 C 1.54320 * 109.88178 * 121.09133 * 2 1 3 5 5 C 1.55157 * 102.94296 * 97.22630 * 4 2 1 6 6 H 1.09002 * 111.00619 * 277.39065 * 5 4 2 7 7 N 1.46905 * 111.00581 * 153.57574 * 5 4 2 8 8 C 1.54905 * 101.57926 * 35.50133 * 5 4 2 9 9 N 1.47025 * 109.88301 * 238.90123 * 2 1 3 10 10 S 1.65600 * 125.64809 * 59.54558 * 9 2 1 11 11 O 1.42097 * 106.39755 * 203.53766 * 10 9 2 12 12 O 1.42100 * 106.40047 * 336.46033 * 10 9 2 13 13 N 1.65597 * 107.21660 * 89.99601 * 10 9 2 14 14 C 1.46504 * 119.99875 * 90.00128 * 13 10 9 15 15 C 1.46497 * 120.00588 * 269.99800 * 13 10 9 16 16 C 1.50692 * 109.47123 * 94.99932 * 15 13 10 17 17 H 1.08000 * 120.00359 * 0.02562 * 16 15 13 18 18 C 1.37883 * 120.00110 * 180.02562 * 16 15 13 19 19 N 1.31515 * 119.99851 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99887 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47567 * 60.00059 * 20 18 16 22 22 H 1.48505 * 109.47003 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47325 * 299.99834 * 20 18 16 24 24 H 1.08993 * 109.47469 * 300.36138 * 1 2 3 25 25 H 1.08997 * 109.47152 * 60.36418 * 1 2 3 26 26 H 1.09003 * 109.47049 * 180.36110 * 1 2 3 27 27 H 1.08996 * 110.72259 * 338.86541 * 4 2 1 28 28 H 1.08999 * 110.87235 * 215.66348 * 4 2 1 29 29 H 1.00901 * 110.99869 * 180.02562 * 7 5 4 30 30 H 1.00896 * 110.99543 * 303.95487 * 7 5 4 31 31 H 1.09008 * 110.37093 * 81.83122 * 8 5 4 32 32 H 1.09005 * 110.36900 * 204.14799 * 8 5 4 33 33 H 1.09004 * 109.47404 * 89.99648 * 14 13 10 34 34 H 1.08994 * 109.47420 * 209.99570 * 14 13 10 35 35 H 1.09001 * 109.46967 * 329.99626 * 14 13 10 36 36 H 1.08993 * 109.47606 * 215.00463 * 15 13 10 37 37 H 1.09002 * 109.46848 * 335.00612 * 15 13 10 38 38 H 0.96999 * 119.99909 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 1.2427 5 6 2.3519 -2.1694 0.6925 6 1 1.4453 -2.7738 0.6612 7 7 3.3966 -2.8329 1.4840 8 6 2.8568 -1.8498 -0.7366 9 7 2.0300 -0.7141 -1.1839 10 16 1.7168 -0.3094 -2.7589 11 8 1.8922 -1.4962 -3.5205 12 8 0.5071 0.4359 -2.7486 13 7 2.9063 0.7365 -3.2420 14 6 4.1357 0.2184 -3.8475 15 6 2.7295 2.1798 -3.0640 16 6 3.3754 2.6095 -1.7721 17 1 3.8687 1.8804 -1.1463 18 6 3.3366 3.9334 -1.3888 19 7 2.7354 4.8211 -2.1505 20 14 4.1379 4.4660 0.2123 21 1 5.5876 4.1471 0.1705 22 1 3.9574 5.9289 0.3934 23 1 3.5050 3.7456 1.3463 24 1 -0.3634 0.5194 0.8866 25 1 -0.3633 0.5082 -0.8932 26 1 -0.3633 -1.0277 0.0065 27 1 1.2918 -0.7889 2.0201 28 1 2.9650 -0.2842 1.6211 29 1 3.5900 -3.7562 1.1259 30 1 4.2362 -2.2743 1.5151 31 1 3.9092 -1.5667 -0.7127 32 1 2.7089 -2.7081 -1.3921 33 1 4.0084 0.1516 -4.9281 34 1 4.9637 0.8897 -3.6201 35 1 4.3496 -0.7717 -3.4451 36 1 3.1946 2.7082 -3.8961 37 1 1.6655 2.4144 -3.0338 38 1 2.7078 5.7524 -1.8807 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601346868.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:52 Heat of formation + Delta-G solvation = -73.954761 kcal Electronic energy + Delta-G solvation = -21606.083134 eV Core-core repulsion = 18417.161481 eV Total energy + Delta-G solvation = -3188.921653 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.84237 -36.71115 -35.49312 -35.23713 -33.70936 -32.51434 -30.83758 -28.05919 -27.81042 -25.40061 -25.04321 -22.30881 -21.54583 -20.51375 -18.26073 -17.24677 -16.89532 -16.51780 -16.35347 -15.41896 -14.84260 -14.58026 -14.09675 -13.81459 -13.46448 -13.32776 -13.08072 -12.85938 -12.54928 -12.20620 -12.16413 -12.11818 -11.72160 -11.53688 -11.28895 -11.20728 -11.16975 -11.13715 -10.82242 -10.56147 -10.51642 -10.20806 -10.11893 -9.81966 -8.95005 -8.61059 -8.51808 -8.05823 -6.14233 -4.21200 1.22110 3.22728 3.28986 3.29247 3.45921 4.07968 4.32899 4.43994 4.55774 4.84893 5.02765 5.15760 5.20239 5.39362 5.45646 5.55714 5.63695 5.79125 5.88974 6.00367 6.04042 6.06541 6.16740 6.21606 6.36581 6.49562 6.64406 6.82181 6.84076 7.01201 7.29802 7.31240 7.40948 7.61170 7.82417 8.12067 8.83220 9.44607 10.93713 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.015422 B = 0.008904 C = 0.007047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.171192 B = 3143.824643 C = 3972.421637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.147 3.853 3 H 0.095 0.905 4 C -0.115 4.115 5 C 0.082 3.918 6 H 0.094 0.906 7 N -0.836 5.836 8 C 0.087 3.913 9 N -1.007 6.007 10 S 2.800 3.200 11 O -1.000 7.000 12 O -0.970 6.970 13 N -0.997 5.997 14 C 0.107 3.893 15 C 0.244 3.756 16 C -0.540 4.540 17 H 0.061 0.939 18 C 0.065 3.935 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.341 0.659 30 H 0.343 0.657 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.037 0.963 37 H 0.052 0.948 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.372 -11.758 4.692 12.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.041 3.959 3 H 0.113 0.887 4 C -0.155 4.155 5 C -0.031 4.031 6 H 0.113 0.887 7 N -0.365 5.365 8 C -0.042 4.042 9 N -0.845 5.845 10 S 2.810 3.190 11 O -0.984 6.984 12 O -0.954 6.954 13 N -0.839 5.839 14 C -0.040 4.040 15 C 0.122 3.878 16 C -0.579 4.579 17 H 0.080 0.920 18 C -0.139 4.139 19 N -0.527 5.527 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.200 1.200 24 H 0.082 0.918 25 H 0.110 0.890 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.154 0.846 30 H 0.156 0.844 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.073 -11.761 4.646 12.646 hybrid contribution 1.508 0.623 0.177 1.642 sum 1.581 -11.138 4.822 12.240 Atomic orbital electron populations 1.22517 0.95119 1.01909 1.04495 1.21358 0.94007 0.97206 0.83354 0.88672 1.22705 1.01967 0.93863 0.96932 1.22668 0.95390 0.95671 0.89379 0.88748 1.58885 1.13543 1.07063 1.57019 1.22817 0.94821 0.89054 0.97536 1.59041 1.63845 1.38744 1.22883 1.01339 0.73752 0.72267 0.71668 1.93521 1.87423 1.48581 1.68892 1.93531 1.43420 1.72415 1.86061 1.57707 1.32108 1.20108 1.73969 1.21199 0.88004 0.97917 0.96838 1.19217 0.98736 0.72573 0.97269 1.21490 1.36738 0.93577 1.06119 0.92048 1.24959 0.95206 0.96516 0.97168 1.69922 1.42504 1.02673 1.37570 0.86644 0.79820 0.77692 0.83770 1.20283 1.21176 1.19953 0.91811 0.88993 0.93150 0.90053 0.90634 0.84634 0.84393 0.92223 0.90758 0.93743 0.90836 0.93186 0.94500 0.93045 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.90 9.00 37.16 0.33 -2.56 16 2 C 0.15 2.42 3.70 -66.95 -0.25 2.17 16 3 H 0.10 1.83 7.68 -51.93 -0.40 1.43 16 4 C -0.12 -1.51 6.17 -24.90 -0.15 -1.67 16 5 C 0.08 0.97 4.20 -65.56 -0.28 0.69 16 6 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 7 N -0.84 -8.11 9.40 -2.85 -0.03 -8.14 16 8 C 0.09 1.18 6.78 -2.53 -0.02 1.16 16 9 N -1.01 -17.16 3.47 -104.42 -0.36 -17.52 16 10 S 2.80 56.70 6.27 -107.50 -0.67 56.02 16 11 O -1.00 -20.90 16.53 -57.17 -0.95 -21.84 16 12 O -0.97 -22.20 13.70 -57.17 -0.78 -22.99 16 13 N -1.00 -20.90 3.23 -123.06 -0.40 -21.30 16 14 C 0.11 1.88 10.31 59.85 0.62 2.49 16 15 C 0.24 6.06 5.41 -5.20 -0.03 6.03 16 16 C -0.54 -13.90 8.93 -34.44 -0.31 -14.20 16 17 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -25.13 13.29 55.43 0.74 -24.40 16 20 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.09 1.74 5.64 -51.93 -0.29 1.44 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.97 7.83 -51.93 -0.41 0.56 16 28 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 29 H 0.34 2.69 9.08 -39.29 -0.36 2.33 16 30 H 0.34 3.13 8.89 -39.29 -0.35 2.78 16 31 H 0.06 0.77 8.08 -51.92 -0.42 0.35 16 32 H 0.07 0.98 7.78 -51.93 -0.40 0.58 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 35 H 0.05 0.77 7.79 -51.93 -0.40 0.37 16 36 H 0.04 0.96 8.11 -51.93 -0.42 0.53 16 37 H 0.05 1.40 6.91 -51.93 -0.36 1.04 16 38 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 319.37 15.07 4.81 4.81 Total: -1.00 -30.74 319.37 -8.72 -39.46 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.89 Total: 4.84 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -0.18 Total: -4.25 kcal Atomic # 7 Polarization: -71.31 SS G_CDS: -0.05 Total: -71.36 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -1.73 Total: -44.83 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 56.70 SS G_CDS: -0.67 Total: 56.02 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.74 -8.72 -39.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601346868.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.491 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds