Wall clock time and date at job start Mon Mar 30 2020 01:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47089 * 2 1 4 4 S 1.65602 * 119.99612 * 164.71987 * 3 2 1 5 5 O 1.42104 * 106.40175 * 178.81816 * 4 3 2 6 6 O 1.42095 * 106.40656 * 311.73868 * 4 3 2 7 7 N 1.65599 * 107.21657 * 65.28266 * 4 3 2 8 8 C 1.47081 * 120.87788 * 269.71954 * 7 4 3 9 9 C 1.53691 * 108.27966 * 128.75786 * 8 7 4 10 10 N 1.46903 * 109.25899 * 54.07591 * 9 8 7 11 11 C 1.46897 * 110.99950 * 172.60825 * 10 9 8 12 12 C 1.50701 * 109.47633 * 294.30636 * 11 10 9 13 13 H 1.08001 * 119.99807 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00323 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99861 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00099 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46819 * 59.99871 * 16 14 12 18 18 H 1.48501 * 109.47160 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47371 * 299.99824 * 16 14 12 20 20 C 1.46891 * 111.27019 * 296.76164 * 10 9 8 21 21 C 1.47078 * 120.88555 * 89.99966 * 7 4 3 22 22 H 1.09005 * 109.46627 * 60.00018 * 1 2 3 23 23 H 1.09003 * 109.47182 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47377 * 299.99842 * 1 2 3 25 25 H 1.08996 * 109.47377 * 240.00158 * 2 1 3 26 26 H 1.08999 * 109.46886 * 120.00296 * 2 1 3 27 27 H 0.97001 * 120.00384 * 345.00465 * 3 2 1 28 28 H 1.09008 * 109.62722 * 248.52343 * 8 7 4 29 29 H 1.09000 * 109.62887 * 9.09849 * 8 7 4 30 30 H 1.09008 * 109.64370 * 294.07814 * 9 8 7 31 31 H 1.08999 * 109.42227 * 173.94662 * 9 8 7 32 32 H 1.09009 * 109.46827 * 54.30841 * 11 10 9 33 33 H 1.09006 * 109.46925 * 174.30289 * 11 10 9 34 34 H 0.96998 * 120.00284 * 180.02562 * 15 14 12 35 35 H 1.08999 * 109.49698 * 303.14463 * 20 10 9 36 36 H 1.08996 * 109.51522 * 183.07368 * 20 10 9 37 37 H 1.08999 * 109.62705 * 350.88797 * 21 7 4 38 38 H 1.08992 * 109.63392 * 111.47423 * 21 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 16 3.5987 1.7006 0.3780 5 8 3.7623 3.1075 0.2629 6 8 3.8796 0.9805 1.5703 7 7 4.5333 1.0225 -0.8091 8 6 5.0235 -0.3588 -0.6871 9 6 4.6652 -1.1132 -1.9772 10 7 5.1845 -0.3702 -3.1332 11 6 5.0183 -1.1412 -4.3725 12 6 5.8792 -2.3767 -4.3149 13 1 6.4893 -2.5696 -3.4448 14 6 5.8890 -3.2602 -5.3733 15 7 5.1464 -3.0250 -6.4330 16 14 6.9567 -4.7912 -5.3021 17 1 6.5498 -5.6250 -4.1426 18 1 6.7885 -5.5707 -6.5549 19 1 8.3801 -4.3956 -5.1521 20 6 4.5514 0.9505 -3.2459 21 6 4.9001 1.7875 -2.0105 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.4150 2.1090 -0.2173 28 1 6.1051 -0.3528 -0.5512 29 1 4.5473 -0.8424 0.1658 30 1 3.5821 -1.2039 -2.0599 31 1 5.1129 -2.1067 -1.9524 32 1 3.9733 -1.4313 -4.4824 33 1 5.3170 -0.5295 -5.2238 34 1 5.1530 -3.6467 -7.1775 35 1 3.4699 0.8311 -3.3108 36 1 4.9162 1.4540 -4.1411 37 1 4.3421 2.7236 -2.0331 38 1 5.9699 1.9959 -1.9995 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601535712.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:03 Heat of formation + Delta-G solvation = -71.452200 kcal Electronic energy + Delta-G solvation = -20829.703560 eV Core-core repulsion = 17640.890427 eV Total energy + Delta-G solvation = -3188.813134 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.37981 -37.29012 -35.95073 -35.82443 -34.41469 -32.34205 -30.78313 -29.85716 -27.84524 -25.10049 -23.37928 -23.02502 -21.83072 -20.36984 -19.03228 -17.97222 -17.28167 -16.49847 -16.24447 -15.24566 -15.05726 -14.77802 -14.45978 -14.18421 -14.13368 -13.78898 -13.63088 -13.19090 -12.49149 -12.25002 -12.14944 -12.11169 -12.02359 -11.85803 -11.78507 -11.60268 -11.28099 -11.07631 -10.84990 -10.80331 -10.61682 -10.42166 -9.91616 -9.63353 -9.34863 -8.86365 -8.48702 -7.32823 -6.08502 -4.10453 0.61471 2.86762 3.29941 3.34569 3.37248 3.54806 4.34615 4.37118 4.71174 4.76834 4.87873 4.96434 5.11152 5.27027 5.36229 5.38890 5.50713 5.63137 5.67599 5.71504 5.75902 5.82586 5.91696 6.03987 6.18140 6.31276 6.44827 6.47322 6.66845 6.91552 7.20630 7.25089 7.72621 8.00412 8.11038 8.46343 8.96851 9.54328 11.02220 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.026009 B = 0.004769 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.279171 B = 5869.438723 C = 6138.983026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.111 3.889 3 N -1.130 6.130 4 S 2.788 3.212 5 O -0.983 6.983 6 O -0.981 6.981 7 N -1.004 6.004 8 C 0.124 3.876 9 C 0.052 3.948 10 N -0.533 5.533 11 C 0.194 3.806 12 C -0.510 4.510 13 H 0.064 0.936 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.899 3.101 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.042 3.958 21 C 0.130 3.870 22 H 0.061 0.939 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.413 0.587 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.024 0.976 31 H 0.096 0.904 32 H -0.010 1.010 33 H 0.031 0.969 34 H 0.262 0.738 35 H 0.025 0.975 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.714 7.392 11.147 15.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.015 4.015 3 N -0.891 5.891 4 S 2.796 3.204 5 O -0.967 6.967 6 O -0.964 6.964 7 N -0.845 5.845 8 C -0.002 4.002 9 C -0.078 4.078 10 N -0.259 5.259 11 C 0.069 3.931 12 C -0.549 4.549 13 H 0.082 0.918 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.727 3.273 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.201 1.201 20 C -0.088 4.088 21 C 0.005 3.995 22 H 0.080 0.920 23 H 0.090 0.910 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.247 0.753 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.042 0.958 31 H 0.114 0.886 32 H 0.008 0.992 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.822 7.704 11.858 15.700 hybrid contribution -0.783 -0.920 -0.814 1.457 sum -7.606 6.783 11.044 15.028 Atomic orbital electron populations 1.21941 0.94250 1.02972 1.02457 1.21260 0.96312 0.81607 1.02287 1.56027 1.30155 1.14530 1.88367 1.01763 0.72506 0.72754 0.73394 1.93600 1.85577 1.30489 1.87084 1.93592 1.84103 1.74550 1.44161 1.58009 1.65985 1.24095 1.36444 1.21767 1.00688 0.79498 0.98214 1.22424 0.97019 0.98424 0.89932 1.61977 1.56028 1.02258 1.05595 1.19721 0.95364 0.92597 0.85370 1.21111 1.25526 1.05312 1.02930 0.91826 1.24987 0.95816 0.98397 0.95328 1.69945 1.39973 1.37279 1.06595 0.86550 0.80958 0.82628 0.77197 1.20260 1.21394 1.20136 1.22385 0.96575 0.92698 0.97166 1.21537 1.01659 0.93026 0.83314 0.91994 0.90991 0.92047 0.91430 0.90492 0.75346 0.90325 0.89960 0.95800 0.88620 0.99186 0.95094 0.92826 0.95645 0.90218 0.89969 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 10.05 37.16 0.37 -0.85 16 2 C 0.11 1.10 6.97 -4.04 -0.03 1.07 16 3 N -1.13 -11.85 6.05 -10.61 -0.06 -11.92 16 4 S 2.79 37.71 6.15 -107.50 -0.66 37.05 16 5 O -0.98 -15.43 16.92 -57.17 -0.97 -16.39 16 6 O -0.98 -15.64 16.37 -57.17 -0.94 -16.57 16 7 N -1.00 -14.09 3.38 -112.97 -0.38 -14.47 16 8 C 0.12 1.81 6.56 -3.37 -0.02 1.79 16 9 C 0.05 0.91 5.47 -3.46 -0.02 0.89 16 10 N -0.53 -10.66 4.62 -235.46 -1.09 -11.75 16 11 C 0.19 4.79 4.72 -4.98 -0.02 4.77 16 12 C -0.51 -13.66 8.41 -34.44 -0.29 -13.95 16 13 H 0.06 1.67 7.13 -52.49 -0.37 1.30 16 14 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 15 N -0.90 -25.91 13.29 55.43 0.74 -25.17 16 16 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 C 0.04 0.69 5.62 -3.70 -0.02 0.67 16 21 C 0.13 1.83 6.53 -3.60 -0.02 1.81 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.71 7.26 -51.93 -0.38 0.33 16 26 H 0.08 0.77 7.74 -51.93 -0.40 0.37 16 27 H 0.41 3.53 8.65 -34.47 -0.30 3.23 16 28 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 29 H 0.08 1.07 7.21 -51.93 -0.37 0.69 16 30 H 0.02 0.41 7.26 -51.92 -0.38 0.03 16 31 H 0.10 1.81 6.67 -51.93 -0.35 1.47 16 32 H -0.01 -0.26 8.13 -51.92 -0.42 -0.68 16 33 H 0.03 0.82 7.97 -51.93 -0.41 0.41 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 1.29 7.99 -51.93 -0.41 0.87 16 37 H 0.08 1.02 7.22 -51.93 -0.37 0.64 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 317.82 15.07 4.79 4.79 Total: -1.00 -32.41 317.82 -9.59 -42.00 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -5.85 Total: -1.17 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -0.15 Total: -2.35 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: -0.80 Total: -63.31 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -1.90 Total: -32.96 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 37.71 SS G_CDS: -0.66 Total: 37.05 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.41 -9.59 -42.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601535712.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.456 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds