Wall clock time and date at job start Mon Mar 30 2020 01:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47327 * 2 1 4 4 C 1.52997 * 109.47022 * 239.99474 * 2 1 3 5 5 C 1.50708 * 109.47042 * 65.00504 * 4 2 1 6 6 H 1.08004 * 119.99423 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99854 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00179 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99744 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47735 * 89.99581 * 9 7 5 11 11 H 1.48498 * 109.46856 * 210.00092 * 9 7 5 12 12 H 1.48506 * 109.46711 * 329.99483 * 9 7 5 13 13 C 1.53004 * 109.46921 * 120.00028 * 2 1 3 14 14 N 1.46901 * 109.46916 * 294.99594 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 H 1.09005 * 109.26088 * 34.30092 * 15 14 13 17 17 C 1.54128 * 109.27067 * 274.79576 * 15 14 13 18 18 S 1.83300 * 101.08778 * 211.55371 * 17 15 14 19 19 C 1.77435 * 96.59717 * 24.87758 * 18 17 15 20 20 C 1.38820 * 130.56732 * 164.56956 * 19 18 17 21 21 C 1.38035 * 120.15452 * 180.20807 * 20 19 18 22 22 C 1.38321 * 119.29399 * 0.02562 * 21 20 19 23 23 C 1.37693 * 120.54099 * 359.87843 * 22 21 20 24 24 C 1.38767 * 108.25244 * 344.63652 * 19 18 17 25 25 H 1.08997 * 109.47560 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.47245 * 300.00418 * 1 2 3 27 27 H 1.08999 * 109.47135 * 59.99761 * 1 2 3 28 28 H 1.09008 * 109.47139 * 185.00096 * 4 2 1 29 29 H 1.09001 * 109.47414 * 305.00040 * 4 2 1 30 30 H 0.97000 * 119.99957 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.46889 * 174.99975 * 13 2 1 32 32 H 1.08995 * 109.47384 * 54.99615 * 13 2 1 33 33 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 34 34 H 1.09002 * 111.10090 * 329.50843 * 17 15 14 35 35 H 1.09003 * 111.10084 * 93.59806 * 17 15 14 36 36 H 1.07994 * 119.92468 * 0.22732 * 20 19 18 37 37 H 1.08000 * 120.34848 * 180.02562 * 21 20 19 38 38 H 1.07993 * 119.72858 * 179.85875 * 22 21 20 39 39 H 1.08003 * 119.47055 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0799 0.9741 -2.3757 7 6 1.9923 -0.4024 -3.7283 8 7 2.6753 -1.5195 -3.8511 9 14 1.4988 0.5627 -5.2496 10 1 2.5648 1.5414 -5.5825 11 1 1.3109 -0.3712 -6.3888 12 1 0.2281 1.2850 -4.9869 13 6 2.0399 -0.7213 1.2493 14 7 1.6513 0.0375 2.4456 15 6 2.1257 -0.6265 3.6672 16 1 3.0834 -1.1068 3.4667 17 6 1.1008 -1.6947 4.0963 18 16 1.2979 -1.6606 5.9183 19 6 1.9124 0.0005 6.0258 20 6 2.0318 0.8501 7.1171 21 6 2.5437 2.1215 6.9534 22 6 2.9341 2.5367 5.6930 23 6 2.8174 1.6932 4.6110 24 6 2.3030 0.4024 4.7563 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 3.1263 -0.7996 -1.2055 29 1 1.6053 -1.7199 -1.2950 30 1 2.9226 -1.8425 -4.7317 31 1 3.1262 -0.7995 1.2056 32 1 1.6052 -1.7198 1.2953 33 1 1.9882 0.9873 2.3966 34 1 0.0902 -1.4082 3.8055 35 1 1.3610 -2.6729 3.6918 36 1 1.7238 0.5155 8.0966 37 1 2.6384 2.7849 7.8003 38 1 3.3334 3.5308 5.5565 39 1 3.1279 2.0351 3.6347 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602557639.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:44 Heat of formation + Delta-G solvation = -2.827876 kcal Electronic energy + Delta-G solvation = -18648.747091 eV Core-core repulsion = 15873.758994 eV Total energy + Delta-G solvation = -2774.988097 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.61622 -38.45562 -36.40464 -34.43250 -32.47151 -31.67657 -30.10420 -28.75791 -26.89252 -25.04461 -23.90331 -23.47334 -21.74997 -20.81043 -18.85784 -18.48093 -17.05315 -16.75743 -16.56283 -16.36007 -15.97624 -15.62864 -15.35747 -14.95252 -14.43037 -14.09608 -13.96224 -13.92818 -13.74327 -13.32146 -13.24974 -12.86753 -12.78973 -12.56835 -12.40047 -12.23002 -12.19441 -11.88598 -11.52764 -11.28613 -11.10316 -10.92061 -10.68643 -10.53149 -9.96897 -9.44719 -8.47105 -8.17463 -6.26327 0.13761 0.31040 0.58075 1.19504 1.40564 1.41270 1.52281 2.42021 2.62820 3.14277 3.16371 3.42680 3.55768 3.90305 4.01260 4.13695 4.16151 4.29912 4.41197 4.47765 4.51458 4.54161 4.64754 4.77356 4.87364 4.90710 4.96277 5.01424 5.25059 5.28388 5.36973 5.45811 5.50313 5.51445 5.55207 5.79996 5.88062 5.89046 5.93200 6.29907 6.32428 6.89815 7.42080 8.94518 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.031046 B = 0.003364 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.664995 B = 8321.571028 C = 8860.362275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.073 4.073 3 H 0.055 0.945 4 C 0.033 3.967 5 C -0.528 4.528 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.263 1.263 13 C 0.074 3.926 14 N -0.669 5.669 15 C 0.125 3.875 16 H 0.066 0.934 17 C -0.066 4.066 18 S -0.170 6.170 19 C -0.090 4.090 20 C -0.099 4.099 21 C -0.097 4.097 22 C -0.118 4.118 23 C -0.102 4.102 24 C -0.121 4.121 25 H 0.036 0.964 26 H 0.065 0.935 27 H 0.037 0.963 28 H -0.013 1.013 29 H -0.009 1.009 30 H 0.262 0.738 31 H 0.023 0.977 32 H 0.068 0.932 33 H 0.347 0.653 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.141 0.859 37 H 0.163 0.837 38 H 0.154 0.846 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.662 6.237 22.423 23.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 H 0.073 0.927 4 C -0.005 4.005 5 C -0.566 4.566 6 H 0.079 0.921 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.188 1.188 13 C -0.055 4.055 14 N -0.302 5.302 15 C 0.014 3.986 16 H 0.084 0.916 17 C -0.214 4.214 18 S 0.071 5.929 19 C -0.203 4.203 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.138 4.138 23 C -0.122 4.122 24 C -0.126 4.126 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.005 0.995 29 H 0.009 0.991 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.087 0.913 33 H 0.168 0.832 34 H 0.126 0.874 35 H 0.139 0.861 36 H 0.159 0.841 37 H 0.181 0.819 38 H 0.172 0.828 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.510 4.823 23.159 23.704 hybrid contribution 1.191 0.988 -2.171 2.666 sum -0.319 5.812 20.988 21.780 Atomic orbital electron populations 1.21491 0.94677 1.00488 1.00449 1.20998 0.96698 0.98456 0.93001 0.92697 1.19011 0.94137 0.94734 0.92620 1.21643 1.34361 1.08562 0.92072 0.92092 1.25931 0.95314 0.96065 1.02615 1.70095 1.40356 1.22905 1.24263 0.85529 0.79023 0.78397 0.78616 1.19906 1.21039 1.18756 1.21995 0.96881 0.97635 0.88942 1.60668 1.63588 1.05950 0.99976 1.20847 0.96423 0.92147 0.89188 0.91607 1.24458 1.03745 1.02451 0.90756 1.86002 1.82519 1.12773 1.11572 1.22118 1.04300 0.96996 0.96894 1.20753 1.00555 0.93496 0.97420 1.21517 0.96631 0.95057 0.98463 1.21341 0.99597 1.00654 0.92181 1.21072 0.98824 0.91870 1.00435 1.20884 1.01964 0.96371 0.93402 0.94434 0.91594 0.94432 0.99499 0.99051 0.92970 0.95876 0.91303 0.83196 0.87404 0.86148 0.84147 0.81921 0.82849 0.85263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.22 8.89 71.98 0.64 -3.58 16 2 C -0.07 -2.85 2.48 -10.80 -0.03 -2.88 16 3 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 4 C 0.03 1.68 4.45 29.85 0.13 1.81 16 5 C -0.53 -29.52 8.41 25.60 0.22 -29.30 16 6 H 0.06 3.28 7.06 -2.91 -0.02 3.26 16 7 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 8 N -0.94 -56.87 13.29 21.45 0.28 -56.59 16 9 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 13 C 0.07 2.41 4.87 86.30 0.42 2.83 16 14 N -0.67 -17.88 5.73 -493.16 -2.83 -20.70 16 15 C 0.12 3.06 2.92 44.60 0.13 3.19 16 16 H 0.07 1.68 7.78 -2.38 -0.02 1.67 16 17 C -0.07 -1.52 7.02 72.36 0.51 -1.01 16 18 S -0.17 -4.00 23.08 -56.49 -1.30 -5.31 16 19 C -0.09 -2.09 6.48 22.54 0.15 -1.94 16 20 C -0.10 -1.82 10.05 22.36 0.22 -1.60 16 21 C -0.10 -1.40 10.08 22.24 0.22 -1.18 16 22 C -0.12 -1.84 10.00 22.16 0.22 -1.62 16 23 C -0.10 -2.04 9.29 22.50 0.21 -1.83 16 24 C -0.12 -2.83 5.70 -19.33 -0.11 -2.94 16 25 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.07 2.12 7.75 -2.38 -0.02 2.10 16 27 H 0.04 1.50 6.95 -2.39 -0.02 1.48 16 28 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 29 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 30 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 31 H 0.02 0.77 8.05 -2.39 -0.02 0.75 16 32 H 0.07 2.25 8.02 -2.39 -0.02 2.23 16 33 H 0.35 8.79 6.79 -89.69 -0.61 8.18 16 34 H 0.11 2.60 8.10 -2.39 -0.02 2.58 16 35 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 37 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 38 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 39 H 0.13 2.34 7.08 -2.91 -0.02 2.32 16 Total: -1.00 -64.32 329.80 2.00 -62.32 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.42 Total: 13.75 kcal Atomic # 6 Polarization: -43.10 SS G_CDS: 3.40 Total: -39.71 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -2.54 Total: -77.29 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: -4.00 SS G_CDS: -1.30 Total: -5.31 kcal Total: -64.32 2.00 -62.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602557639.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.495 kcal (2) G-P(sol) polarization free energy of solvation -64.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds