Wall clock time and date at job start Mon Mar 30 2020 01:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47052 * 2 1 4 4 C 1.52994 * 109.46879 * 119.99831 * 2 1 3 5 5 C 1.50698 * 109.47479 * 295.00012 * 4 2 1 6 6 H 1.08001 * 119.99953 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00052 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00208 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99998 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46990 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47455 * 119.99757 * 9 7 5 12 12 H 1.48499 * 109.46842 * 239.99814 * 9 7 5 13 13 C 1.52998 * 109.47004 * 239.99905 * 2 1 3 14 14 N 1.46906 * 109.47020 * 65.00051 * 13 2 1 15 15 C 1.46902 * 110.99573 * 179.97438 * 14 13 2 16 16 H 1.08995 * 109.27481 * 34.30103 * 15 14 13 17 17 C 1.54142 * 109.28081 * 274.76549 * 15 14 13 18 18 S 1.83097 * 101.16752 * 268.07920 * 17 15 14 19 19 C 1.77440 * 96.60239 * 335.16463 * 18 17 15 20 20 C 1.38817 * 130.57244 * 195.42320 * 19 18 17 21 21 C 1.38025 * 120.16007 * 179.35984 * 20 19 18 22 22 C 1.38325 * 119.29441 * 359.97438 * 21 20 19 23 23 C 1.37698 * 120.53971 * 0.19601 * 22 21 20 24 24 C 1.38879 * 108.28026 * 15.15905 * 19 18 17 25 25 H 1.09004 * 109.47220 * 300.00479 * 1 2 3 26 26 H 1.08999 * 109.47560 * 59.99994 * 1 2 3 27 27 H 1.09001 * 109.47523 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47286 * 55.00023 * 4 2 1 29 29 H 1.09005 * 109.46665 * 174.99692 * 4 2 1 30 30 H 0.96996 * 119.99734 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.47142 * 305.00261 * 13 2 1 32 32 H 1.09000 * 109.46991 * 185.00006 * 13 2 1 33 33 H 1.00896 * 111.00309 * 56.04370 * 14 13 2 34 34 H 1.08996 * 111.09623 * 26.00994 * 17 15 14 35 35 H 1.09004 * 111.09710 * 150.09774 * 17 15 14 36 36 H 1.08000 * 119.92236 * 359.36106 * 20 19 18 37 37 H 1.08000 * 120.35750 * 180.02562 * 21 20 19 38 38 H 1.08004 * 119.72997 * 180.16562 * 22 21 20 39 39 H 1.07999 * 119.46943 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0806 0.9746 2.3757 7 6 1.9932 -0.4017 3.7282 8 7 2.6763 -1.5188 3.8511 9 14 1.4984 0.5627 5.2496 10 1 0.7411 1.7738 4.8434 11 1 0.6450 -0.2870 6.1185 12 1 2.7162 0.9682 5.9963 13 6 2.0400 -0.7213 -1.2492 14 7 1.6513 0.0374 -2.4456 15 6 2.1257 -0.6266 -3.6671 16 1 2.0928 -1.7068 -3.5254 17 6 3.5780 -0.1944 -3.9502 18 16 3.3116 1.2475 -5.0467 19 6 1.7173 0.7538 -5.6493 20 6 0.9855 1.2032 -6.7399 21 6 -0.2471 0.6504 -7.0231 22 6 -0.7418 -0.3533 -6.2100 23 6 -0.0173 -0.7966 -5.1262 24 6 1.2293 -0.2479 -4.8202 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6053 -1.7198 1.2952 29 1 3.1263 -0.7994 1.2055 30 1 2.9235 -1.8416 4.7317 31 1 1.6053 -1.7198 -1.2951 32 1 3.1263 -0.7995 -1.2056 33 1 1.9881 0.9873 -2.3967 34 1 4.0855 0.1008 -3.0318 35 1 4.1285 -0.9819 -4.4648 36 1 1.3815 1.9871 -7.3683 37 1 -0.8190 0.9973 -7.8711 38 1 -1.7043 -0.7926 -6.4267 39 1 -0.4202 -1.5809 -4.5026 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602557640.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:46 Heat of formation + Delta-G solvation = 13.241277 kcal Electronic energy + Delta-G solvation = -18694.832283 eV Core-core repulsion = 15920.540997 eV Total energy + Delta-G solvation = -2774.291286 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.64987 -37.31106 -34.97603 -32.52306 -31.09062 -30.84750 -28.92829 -26.77647 -25.37206 -23.72539 -22.96387 -22.31807 -20.92380 -19.15257 -17.82364 -16.41548 -15.80458 -15.77253 -15.26675 -15.16321 -14.64181 -14.44928 -14.06473 -13.58723 -13.29207 -13.11517 -12.66150 -12.56937 -12.46061 -12.13528 -11.70637 -11.57220 -11.40545 -11.08616 -10.88105 -10.78476 -10.30962 -10.30870 -10.27293 -9.83307 -9.72424 -9.21744 -9.01741 -8.90291 -8.34689 -8.32015 -7.55469 -5.99234 -4.00233 1.00927 1.19589 1.44251 2.10896 3.31471 3.39215 3.43408 3.48216 4.17433 4.34426 4.48180 4.57925 4.74056 4.87458 4.99271 5.16993 5.25866 5.33851 5.37018 5.40968 5.60816 5.65667 5.78693 5.84212 6.10132 6.11838 6.22421 6.34733 6.35828 6.49438 6.64967 6.72854 6.94906 7.12993 7.15885 7.24932 7.50704 7.67149 7.82181 8.00801 8.44850 9.06301 9.63467 11.12322 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.030510 B = 0.003454 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.508306 B = 8104.185080 C = 8494.176130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.054 0.946 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.062 3.938 14 N -0.670 5.670 15 C 0.120 3.880 16 H 0.100 0.900 17 C -0.118 4.118 18 S -0.151 6.151 19 C -0.076 4.076 20 C -0.093 4.093 21 C -0.104 4.104 22 C -0.124 4.124 23 C -0.074 4.074 24 C -0.081 4.081 25 H 0.054 0.946 26 H 0.042 0.958 27 H 0.039 0.961 28 H 0.016 0.984 29 H 0.012 0.988 30 H 0.259 0.741 31 H 0.069 0.931 32 H 0.027 0.973 33 H 0.346 0.654 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.124 0.876 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.521 1.782 -21.767 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.066 4.066 14 N -0.301 5.301 15 C 0.008 3.992 16 H 0.118 0.882 17 C -0.268 4.268 18 S 0.090 5.910 19 C -0.189 4.189 20 C -0.117 4.117 21 C -0.124 4.124 22 C -0.144 4.144 23 C -0.095 4.095 24 C -0.087 4.087 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.035 0.965 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.166 0.834 34 H 0.135 0.865 35 H 0.119 0.881 36 H 0.142 0.858 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.211 2.409 -21.800 22.044 hybrid contribution 0.019 -0.392 1.232 1.293 sum -2.192 2.017 -20.568 20.783 Atomic orbital electron populations 1.21590 0.95630 1.00563 1.00246 1.21204 0.96103 0.98979 0.93818 0.92730 1.19121 0.95883 0.95574 0.90399 1.21270 1.34519 1.08287 0.90952 0.92492 1.25020 0.95320 0.95100 0.99123 1.69973 1.39181 1.21261 1.23284 0.86574 0.78260 0.80154 0.83264 1.19722 1.21074 1.21113 1.22283 0.97404 0.97722 0.89197 1.60566 1.63338 1.06095 1.00102 1.20857 0.87608 1.00756 0.89976 0.88212 1.25163 1.01275 0.98167 1.02192 1.86077 1.18946 1.31705 1.54237 1.22070 0.98120 0.99841 0.98839 1.20367 0.94873 1.00710 0.95729 1.21069 0.95118 0.96612 0.99641 1.20984 1.00040 0.97869 0.95505 1.20827 0.92713 0.99430 0.96491 1.20676 0.96356 0.97168 0.94529 0.92715 0.93930 0.94159 0.96541 0.96932 0.93153 0.91288 0.95465 0.83420 0.86497 0.88063 0.85812 0.85348 0.85669 0.85773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.89 37.16 0.33 -2.04 16 2 C -0.08 -1.64 2.48 -90.62 -0.22 -1.86 16 3 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.03 0.70 4.45 -27.89 -0.12 0.57 16 5 C -0.51 -14.25 8.41 -34.44 -0.29 -14.54 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.06 1.01 4.82 -3.82 -0.02 0.99 16 14 N -0.67 -9.48 5.64 -107.22 -0.60 -10.08 16 15 C 0.12 1.45 2.87 -68.18 -0.20 1.25 16 16 H 0.10 1.16 7.78 -51.93 -0.40 0.76 16 17 C -0.12 -1.30 6.87 37.75 0.26 -1.04 16 18 S -0.15 -1.83 23.00 -107.50 -2.47 -4.30 16 19 C -0.08 -0.93 6.48 -39.13 -0.25 -1.19 16 20 C -0.09 -0.99 10.05 -39.45 -0.40 -1.39 16 21 C -0.10 -0.96 10.08 -39.63 -0.40 -1.36 16 22 C -0.12 -1.19 10.00 -39.75 -0.40 -1.59 16 23 C -0.07 -0.83 9.97 -39.27 -0.39 -1.23 16 24 C -0.08 -1.00 5.56 -103.79 -0.58 -1.58 16 25 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 26 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.07 1.13 8.05 -51.93 -0.42 0.71 16 32 H 0.03 0.44 7.58 -51.93 -0.39 0.04 16 33 H 0.35 5.00 8.40 -39.29 -0.33 4.67 16 34 H 0.12 1.30 7.49 -51.93 -0.39 0.91 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 39 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 331.48 15.07 5.00 5.00 Total: -1.00 -29.95 331.48 -11.15 -41.11 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -6.01 Total: 1.24 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -2.78 Total: -23.51 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.13 Total: -36.17 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -1.83 SS G_CDS: -2.47 Total: -4.30 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.95 -11.15 -41.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602557640.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.346 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds