Wall clock time and date at job start Mon Mar 30 2020 01:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47052 * 2 1 4 4 C 1.52994 * 109.46879 * 119.99831 * 2 1 3 5 5 C 1.50698 * 109.47479 * 295.00012 * 4 2 1 6 6 H 1.08001 * 119.99953 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00052 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00208 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99998 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46990 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47455 * 119.99757 * 9 7 5 12 12 H 1.48499 * 109.46842 * 239.99814 * 9 7 5 13 13 C 1.52998 * 109.47004 * 239.99905 * 2 1 3 14 14 N 1.46906 * 109.47020 * 65.00051 * 13 2 1 15 15 C 1.46902 * 110.99573 * 179.97438 * 14 13 2 16 16 H 1.08995 * 109.27481 * 34.30103 * 15 14 13 17 17 C 1.54142 * 109.28081 * 274.76549 * 15 14 13 18 18 S 1.83097 * 101.16752 * 268.07920 * 17 15 14 19 19 C 1.77440 * 96.60239 * 335.16463 * 18 17 15 20 20 C 1.38817 * 130.57244 * 195.42320 * 19 18 17 21 21 C 1.38025 * 120.16007 * 179.35984 * 20 19 18 22 22 C 1.38325 * 119.29441 * 359.97438 * 21 20 19 23 23 C 1.37698 * 120.53971 * 0.19601 * 22 21 20 24 24 C 1.38879 * 108.28026 * 15.15905 * 19 18 17 25 25 H 1.09004 * 109.47220 * 300.00479 * 1 2 3 26 26 H 1.08999 * 109.47560 * 59.99994 * 1 2 3 27 27 H 1.09001 * 109.47523 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47286 * 55.00023 * 4 2 1 29 29 H 1.09005 * 109.46665 * 174.99692 * 4 2 1 30 30 H 0.96996 * 119.99734 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.47142 * 305.00261 * 13 2 1 32 32 H 1.09000 * 109.46991 * 185.00006 * 13 2 1 33 33 H 1.00896 * 111.00309 * 56.04370 * 14 13 2 34 34 H 1.08996 * 111.09623 * 26.00994 * 17 15 14 35 35 H 1.09004 * 111.09710 * 150.09774 * 17 15 14 36 36 H 1.08000 * 119.92236 * 359.36106 * 20 19 18 37 37 H 1.08000 * 120.35750 * 180.02562 * 21 20 19 38 38 H 1.08004 * 119.72997 * 180.16562 * 22 21 20 39 39 H 1.07999 * 119.46943 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0806 0.9746 2.3757 7 6 1.9932 -0.4017 3.7282 8 7 2.6763 -1.5188 3.8511 9 14 1.4984 0.5627 5.2496 10 1 0.7411 1.7738 4.8434 11 1 0.6450 -0.2870 6.1185 12 1 2.7162 0.9682 5.9963 13 6 2.0400 -0.7213 -1.2492 14 7 1.6513 0.0374 -2.4456 15 6 2.1257 -0.6266 -3.6671 16 1 2.0928 -1.7068 -3.5254 17 6 3.5780 -0.1944 -3.9502 18 16 3.3116 1.2475 -5.0467 19 6 1.7173 0.7538 -5.6493 20 6 0.9855 1.2032 -6.7399 21 6 -0.2471 0.6504 -7.0231 22 6 -0.7418 -0.3533 -6.2100 23 6 -0.0173 -0.7966 -5.1262 24 6 1.2293 -0.2479 -4.8202 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6053 -1.7198 1.2952 29 1 3.1263 -0.7994 1.2055 30 1 2.9235 -1.8416 4.7317 31 1 1.6053 -1.7198 -1.2951 32 1 3.1263 -0.7995 -1.2056 33 1 1.9881 0.9873 -2.3967 34 1 4.0855 0.1008 -3.0318 35 1 4.1285 -0.9819 -4.4648 36 1 1.3815 1.9871 -7.3683 37 1 -0.8190 0.9973 -7.8711 38 1 -1.7043 -0.7926 -6.4267 39 1 -0.4202 -1.5809 -4.5026 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602557640.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:46 Heat of formation + Delta-G solvation = -2.690860 kcal Electronic energy + Delta-G solvation = -18695.523152 eV Core-core repulsion = 15920.540997 eV Total energy + Delta-G solvation = -2774.982155 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.50657 -38.52124 -36.45458 -34.41506 -32.25441 -31.72758 -29.93693 -28.67195 -26.80191 -25.01240 -23.96202 -23.67011 -21.84464 -20.75204 -18.70267 -18.47428 -16.85868 -16.80327 -16.43687 -16.21861 -16.09525 -15.60194 -15.44581 -14.60063 -14.50278 -14.35596 -14.12167 -13.70298 -13.53859 -13.31206 -13.27525 -13.05438 -12.79425 -12.61226 -12.47321 -12.22261 -12.02009 -11.86928 -11.52406 -11.19260 -11.09229 -10.92227 -10.64427 -10.53643 -9.77592 -9.48507 -8.45522 -8.17753 -6.26257 0.19364 0.39497 0.57267 1.22900 1.39461 1.40435 1.53063 2.41832 2.66059 3.16003 3.25008 3.32462 3.67929 3.92988 4.05724 4.18220 4.20564 4.30302 4.36878 4.45027 4.52455 4.55305 4.63012 4.83087 4.87921 4.91993 5.00822 5.05820 5.28080 5.33367 5.45423 5.46475 5.50777 5.55548 5.58181 5.80455 5.89220 5.92760 6.00459 6.30485 6.32591 6.89831 7.42036 8.94313 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.030510 B = 0.003454 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.508306 B = 8104.185080 C = 8494.176130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.074 4.074 3 H 0.051 0.949 4 C 0.034 3.966 5 C -0.528 4.528 6 H 0.059 0.941 7 C -0.001 4.001 8 N -0.934 5.934 9 Si 0.959 3.041 10 H -0.263 1.263 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.077 3.923 14 N -0.669 5.669 15 C 0.122 3.878 16 H 0.104 0.896 17 C -0.110 4.110 18 S -0.174 6.174 19 C -0.092 4.092 20 C -0.103 4.103 21 C -0.098 4.098 22 C -0.123 4.123 23 C -0.088 4.088 24 C -0.100 4.100 25 H 0.035 0.965 26 H 0.062 0.938 27 H 0.037 0.963 28 H -0.008 1.008 29 H -0.012 1.012 30 H 0.262 0.738 31 H 0.069 0.931 32 H 0.027 0.973 33 H 0.345 0.655 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.136 0.864 37 H 0.160 0.840 38 H 0.151 0.849 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.766 2.475 -23.029 23.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 H 0.069 0.931 4 C -0.004 4.004 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.575 5.575 9 Si 0.784 3.216 10 H -0.187 1.187 11 H -0.205 1.205 12 H -0.206 1.206 13 C -0.051 4.051 14 N -0.299 5.299 15 C 0.011 3.989 16 H 0.122 0.878 17 C -0.260 4.260 18 S 0.066 5.934 19 C -0.205 4.205 20 C -0.127 4.127 21 C -0.118 4.118 22 C -0.143 4.143 23 C -0.108 4.108 24 C -0.106 4.106 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.011 0.989 29 H 0.007 0.993 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.164 0.836 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.154 0.846 37 H 0.178 0.822 38 H 0.169 0.831 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.464 3.108 -23.082 23.547 hybrid contribution 0.373 -0.621 1.537 1.700 sum -3.090 2.487 -21.545 21.907 Atomic orbital electron populations 1.21476 0.94802 1.00436 1.00272 1.21005 0.96642 0.98367 0.93270 0.93091 1.19000 0.94206 0.94703 0.92478 1.21668 1.34269 1.08506 0.92160 0.92305 1.25914 0.95303 0.96094 1.02544 1.70096 1.40358 1.22883 1.24189 0.85490 0.78069 0.78918 0.79151 1.18722 1.20519 1.20568 1.21963 0.97213 0.97316 0.88649 1.60484 1.63558 1.05857 1.00019 1.20868 0.88265 1.00748 0.89054 0.87764 1.25135 1.00768 0.98079 1.02002 1.86084 1.19780 1.32705 1.54789 1.22228 0.98069 1.00382 0.99776 1.20691 0.95424 1.01103 0.95473 1.21467 0.94529 0.95723 1.00097 1.21345 1.00779 0.97547 0.94623 1.21047 0.92607 0.99796 0.97369 1.20718 0.97054 0.97986 0.94804 0.94548 0.91862 0.94341 0.98940 0.99337 0.92957 0.91276 0.95436 0.83589 0.86725 0.86461 0.84592 0.82235 0.83095 0.85394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.27 8.89 71.98 0.64 -3.63 16 2 C -0.07 -2.96 2.48 -10.80 -0.03 -2.99 16 3 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 4 C 0.03 1.74 4.45 29.85 0.13 1.88 16 5 C -0.53 -29.76 8.41 25.60 0.22 -29.55 16 6 H 0.06 3.22 7.06 -2.91 -0.02 3.20 16 7 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 8 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 9 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 10 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 C 0.08 2.49 4.82 86.30 0.42 2.91 16 14 N -0.67 -18.35 5.64 -493.13 -2.78 -21.13 16 15 C 0.12 2.84 2.87 44.61 0.13 2.97 16 16 H 0.10 2.32 7.78 -2.39 -0.02 2.30 16 17 C -0.11 -2.34 6.87 72.37 0.50 -1.84 16 18 S -0.17 -4.13 23.00 -56.49 -1.30 -5.43 16 19 C -0.09 -2.15 6.48 22.56 0.15 -2.00 16 20 C -0.10 -2.00 10.05 22.36 0.22 -1.78 16 21 C -0.10 -1.52 10.08 22.24 0.22 -1.29 16 22 C -0.12 -2.02 10.00 22.16 0.22 -1.80 16 23 C -0.09 -1.82 9.97 22.47 0.22 -1.60 16 24 C -0.10 -2.34 5.56 -19.32 -0.11 -2.44 16 25 H 0.04 1.49 6.95 -2.38 -0.02 1.47 16 26 H 0.06 2.13 7.75 -2.39 -0.02 2.11 16 27 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 28 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 29 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 30 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 31 H 0.07 2.24 8.05 -2.39 -0.02 2.22 16 32 H 0.03 0.88 7.58 -2.39 -0.02 0.86 16 33 H 0.34 9.72 8.40 -89.70 -0.75 8.96 16 34 H 0.11 2.49 7.49 -2.39 -0.02 2.47 16 35 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 38 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 39 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -64.36 331.48 1.91 -62.45 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.28 Total: 14.82 kcal Atomic # 6 Polarization: -44.18 SS G_CDS: 3.40 Total: -40.78 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -2.49 Total: -77.64 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: -4.13 SS G_CDS: -1.30 Total: -5.43 kcal Total: -64.36 1.91 -62.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602557640.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.762 kcal (2) G-P(sol) polarization free energy of solvation -64.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds