Wall clock time and date at job start Mon Mar 30 2020 02:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37090 * 120.00270 * 2 1 4 4 H 1.08004 * 120.00204 * 187.45019 * 3 2 1 5 5 C 1.38949 * 120.00105 * 7.44899 * 3 2 1 6 6 N 1.31411 * 119.99823 * 7.61802 * 5 3 2 7 7 Si 1.86799 * 120.00260 * 187.61860 * 5 3 2 8 8 H 1.48502 * 109.47129 * 89.99521 * 7 5 3 9 9 H 1.48500 * 109.47141 * 209.99946 * 7 5 3 10 10 H 1.48498 * 109.46922 * 329.99872 * 7 5 3 11 11 C 1.34781 * 119.99454 * 179.97438 * 2 1 3 12 12 O 1.21295 * 119.99460 * 185.45679 * 11 2 1 13 13 C 1.50697 * 120.00352 * 5.46011 * 11 2 1 14 14 C 1.50699 * 112.85028 * 64.17209 * 13 11 2 15 15 C 1.38242 * 119.97406 * 236.85579 * 14 13 11 16 16 C 1.38201 * 120.02396 * 179.97438 * 15 14 13 17 17 C 1.38456 * 119.97473 * 0.02562 * 16 15 14 18 18 F 1.35100 * 120.03149 * 179.97438 * 17 16 15 19 19 C 1.38463 * 119.95133 * 0.02562 * 17 16 15 20 20 C 1.38202 * 119.97066 * 359.97438 * 19 17 16 21 21 C 1.53784 * 113.61416 * 195.37474 * 13 11 2 22 22 C 1.53947 * 87.02207 * 89.22795 * 21 13 11 23 23 C 1.53779 * 87.11374 * 25.36215 * 22 21 13 24 24 H 1.09001 * 109.47247 * 175.07935 * 1 2 3 25 25 H 1.08997 * 109.47162 * 295.08712 * 1 2 3 26 26 H 1.09007 * 109.46620 * 55.08410 * 1 2 3 27 27 H 0.97004 * 119.99993 * 180.02562 * 6 5 3 28 28 H 1.07999 * 119.99142 * 359.97438 * 15 14 13 29 29 H 1.07998 * 120.01318 * 180.28202 * 16 15 14 30 30 H 1.07996 * 120.01463 * 180.02562 * 19 17 16 31 31 H 1.07996 * 119.98556 * 180.02562 * 20 19 17 32 32 H 1.08999 * 113.61208 * 203.74644 * 21 13 11 33 33 H 1.09003 * 113.61305 * 334.64680 * 21 13 11 34 34 H 1.09007 * 113.53742 * 270.81418 * 22 21 13 35 35 H 1.08996 * 113.74664 * 139.94430 * 22 21 13 36 36 H 1.09000 * 113.61766 * 220.09293 * 23 22 21 37 37 H 1.09000 * 113.69304 * 89.20039 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1872 0.0000 4 1 3.2238 1.1911 -0.1213 5 6 1.4647 2.3855 0.1560 6 7 0.1845 2.3760 0.4525 7 14 2.3623 4.0099 -0.0557 8 1 2.2844 4.4371 -1.4758 9 1 1.7306 5.0407 0.8067 10 1 3.7856 3.8434 0.3336 11 6 2.1388 -1.1673 0.0005 12 8 3.3477 -1.1696 0.1004 13 6 1.3904 -2.4694 -0.1231 14 6 0.6801 -2.6130 -1.4443 15 6 -0.6841 -2.8347 -1.4745 16 6 -1.3367 -2.9660 -2.6857 17 6 -0.6236 -2.8759 -3.8690 18 9 -1.2603 -3.0046 -5.0536 19 6 0.7429 -2.6548 -3.8376 20 6 1.3933 -2.5239 -2.6252 21 6 2.2276 -3.7002 0.2633 22 6 1.7260 -3.4895 1.7034 23 6 0.5023 -2.7872 1.0915 24 1 -0.3634 -1.0239 -0.0881 25 1 -0.3633 0.4357 0.9307 26 1 -0.3633 0.5883 -0.8428 27 1 -0.2944 3.2126 0.5610 28 1 -1.2401 -2.9054 -0.5514 29 1 -2.4032 -3.1347 -2.7092 30 1 1.3001 -2.5840 -4.7600 31 1 2.4591 -2.3511 -2.6004 32 1 1.8763 -4.6270 -0.1902 33 1 3.3013 -3.5517 0.1478 34 1 2.3601 -2.8271 2.2927 35 1 1.4828 -4.4160 2.2234 36 1 0.1851 -1.9026 1.6438 37 1 -0.3224 -3.4628 0.8646 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604526196.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:07 Heat of formation + Delta-G solvation = -31.645581 kcal Electronic energy + Delta-G solvation = -22136.973896 eV Core-core repulsion = 18794.522994 eV Total energy + Delta-G solvation = -3342.450902 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.86796 -42.02636 -39.49540 -38.09822 -36.63973 -33.61060 -32.15531 -31.76591 -28.54780 -27.35677 -26.56604 -25.77535 -23.82889 -22.89435 -22.07141 -19.56520 -18.92743 -18.75713 -17.91701 -17.17900 -16.95648 -16.59037 -16.45952 -16.07238 -15.75642 -15.28258 -15.25390 -14.54564 -14.37750 -14.30599 -13.76602 -13.61955 -13.47260 -13.31361 -12.98194 -12.84770 -12.71963 -12.59315 -12.20923 -12.13338 -11.97395 -11.71265 -11.35110 -11.18168 -11.05798 -10.38936 -10.04153 -9.84922 -9.43462 -8.24208 -5.92860 0.14487 0.28477 1.33599 1.37543 1.49677 1.98466 2.23319 2.58419 3.02422 3.08709 3.28880 3.58348 3.73021 3.76180 3.85294 3.92871 3.99140 4.06171 4.32953 4.46201 4.56441 4.71439 4.78848 4.83814 4.97127 5.02736 5.05602 5.13507 5.15658 5.20025 5.20818 5.29595 5.42382 5.49383 5.56773 5.59215 5.93031 6.04402 6.47573 7.15647 7.50341 8.03694 8.65527 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.006977 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.040636 B = 4012.211020 C = 4958.607072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.453 5.453 3 C -0.343 4.343 4 H 0.074 0.926 5 C -0.004 4.004 6 N -0.894 5.894 7 Si 0.989 3.011 8 H -0.271 1.271 9 H -0.268 1.268 10 H -0.276 1.276 11 C 0.459 3.541 12 O -0.636 6.636 13 C -0.061 4.061 14 C -0.070 4.070 15 C -0.086 4.086 16 C -0.141 4.141 17 C 0.078 3.922 18 F -0.146 7.146 19 C -0.153 4.153 20 C -0.097 4.097 21 C -0.108 4.108 22 C -0.132 4.132 23 C -0.124 4.124 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.031 0.969 27 H 0.271 0.729 28 H 0.164 0.836 29 H 0.165 0.835 30 H 0.144 0.856 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.919 -11.793 -2.975 13.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.170 5.170 3 C -0.471 4.471 4 H 0.092 0.908 5 C -0.205 4.205 6 N -0.534 5.534 7 Si 0.812 3.188 8 H -0.196 1.196 9 H -0.193 1.193 10 H -0.201 1.201 11 C 0.248 3.752 12 O -0.525 6.525 13 C -0.064 4.064 14 C -0.071 4.071 15 C -0.103 4.103 16 C -0.160 4.160 17 C 0.059 3.941 18 F -0.124 7.124 19 C -0.171 4.171 20 C -0.115 4.115 21 C -0.145 4.145 22 C -0.169 4.169 23 C -0.161 4.161 24 H 0.093 0.907 25 H 0.080 0.920 26 H 0.050 0.950 27 H 0.082 0.918 28 H 0.181 0.819 29 H 0.182 0.818 30 H 0.162 0.838 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.550 -11.599 -2.931 13.639 hybrid contribution 0.763 1.396 -0.463 1.657 sum -5.787 -10.203 -3.394 12.211 Atomic orbital electron populations 1.21818 0.78921 0.99047 1.02152 1.43802 1.07016 1.04466 1.61702 1.19736 0.93200 0.84225 1.49907 0.90832 1.26017 0.96783 1.02139 0.95539 1.70207 1.08676 1.28268 1.46205 0.85002 0.78038 0.77166 0.78569 1.19614 1.19279 1.20084 1.20045 0.87212 0.85047 0.82880 1.90454 1.16388 1.87527 1.58102 1.20722 0.98300 0.93498 0.93866 1.19623 0.94540 0.99695 0.93227 1.21214 0.92549 0.97571 0.98986 1.21381 1.01947 1.02368 0.90274 1.17841 0.90868 1.04027 0.81380 1.91468 1.82116 1.93631 1.45232 1.21191 0.93360 1.03227 0.99347 1.20859 1.00069 0.98631 0.91965 1.22875 0.99222 0.95735 0.96686 1.22728 0.96851 1.01371 0.95953 1.23264 0.97710 1.01301 0.93856 0.90702 0.91966 0.95016 0.91823 0.81856 0.81756 0.83782 0.87095 0.86861 0.92719 0.93062 0.87692 0.91992 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.60 7.43 127.77 0.95 6.55 16 2 N -0.45 -23.79 3.03 -658.87 -1.99 -25.78 16 3 C -0.34 -19.92 9.53 84.04 0.80 -19.12 16 4 H 0.07 4.59 7.23 -2.91 -0.02 4.57 16 5 C 0.00 -0.20 5.39 84.93 0.46 0.26 16 6 N -0.89 -47.13 9.65 21.66 0.21 -46.93 16 7 Si 0.99 43.30 29.56 68.60 2.03 45.32 16 8 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 9 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 C 0.46 22.58 6.02 87.66 0.53 23.11 16 12 O -0.64 -36.50 15.54 -3.07 -0.05 -36.54 16 13 C -0.06 -2.14 0.47 -53.15 -0.03 -2.16 16 14 C -0.07 -2.22 4.00 -19.86 -0.08 -2.30 16 15 C -0.09 -2.13 7.73 22.26 0.17 -1.96 16 16 C -0.14 -3.30 10.03 22.31 0.22 -3.07 16 17 C 0.08 2.10 7.30 22.38 0.16 2.27 16 18 F -0.15 -3.91 17.27 44.97 0.78 -3.13 16 19 C -0.15 -4.41 10.03 22.31 0.22 -4.19 16 20 C -0.10 -3.22 9.39 22.26 0.21 -3.01 16 21 C -0.11 -3.31 7.09 31.18 0.22 -3.09 16 22 C -0.13 -3.73 7.81 31.18 0.24 -3.49 16 23 C -0.12 -3.48 5.33 31.12 0.17 -3.31 16 24 H 0.07 2.72 2.65 -2.39 -0.01 2.71 16 25 H 0.06 3.01 6.70 -2.39 -0.02 3.00 16 26 H 0.03 1.54 7.47 -2.38 -0.02 1.52 16 27 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 28 H 0.16 3.11 5.77 -2.91 -0.02 3.09 16 29 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 30 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 31 H 0.11 4.07 8.05 -2.91 -0.02 4.04 16 32 H 0.11 2.71 8.09 -2.39 -0.02 2.69 16 33 H 0.05 2.00 7.34 -2.39 -0.02 1.98 16 34 H 0.05 1.77 8.14 -2.38 -0.02 1.76 16 35 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.06 1.98 6.83 -2.39 -0.02 1.96 16 37 H 0.13 2.52 6.29 -2.39 -0.02 2.50 16 Total: -1.00 -68.64 301.04 6.32 -62.31 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 1.10 Total: 18.25 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 4.25 Total: -13.51 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -1.78 Total: -72.71 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -0.05 Total: -36.54 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.78 Total: -3.13 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -68.64 6.32 -62.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604526196.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.669 kcal (2) G-P(sol) polarization free energy of solvation -68.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds