Wall clock time and date at job start Mon Mar 30 2020 01:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.46921 * 2 1 4 4 C 1.46504 * 120.00271 * 269.99859 * 3 2 1 5 5 C 1.50697 * 109.47338 * 270.00352 * 4 3 2 6 6 H 1.08007 * 119.99991 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00120 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99770 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99889 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47597 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46799 * 120.00652 * 9 7 5 12 12 H 1.48503 * 109.47078 * 240.00405 * 9 7 5 13 13 C 1.34777 * 119.99875 * 90.00602 * 3 2 1 14 14 O 1.21593 * 119.99953 * 179.97438 * 13 3 2 15 15 N 1.34773 * 120.00097 * 0.26801 * 13 3 2 16 16 C 1.39854 * 120.00413 * 179.72677 * 15 13 3 17 17 N 1.30931 * 126.05357 * 359.69501 * 16 15 13 18 18 N 1.39927 * 108.85764 * 179.85182 * 17 16 15 19 19 C 1.46502 * 125.69712 * 180.14514 * 18 17 16 20 20 C 1.34354 * 108.60871 * 0.41826 * 18 17 16 21 21 C 1.38048 * 107.52086 * 359.75678 * 20 18 17 22 22 C 1.43199 * 126.43486 * 180.02562 * 21 20 18 23 23 N 5.47462 * 86.98470 * 99.18205 * 2 1 3 24 24 H 1.09002 * 109.47171 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47318 * 299.99362 * 1 2 3 26 26 H 1.09001 * 109.47466 * 59.99921 * 1 2 3 27 27 H 1.08997 * 109.46785 * 240.00055 * 2 1 3 28 28 H 1.09004 * 109.47223 * 120.00538 * 2 1 3 29 29 H 1.08994 * 109.46719 * 30.00276 * 4 3 2 30 30 H 1.08996 * 109.47068 * 150.00171 * 4 3 2 31 31 H 0.97004 * 119.99826 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00112 * 359.73180 * 15 13 3 33 33 H 1.09002 * 109.47003 * 270.32011 * 19 18 17 34 34 H 1.08994 * 109.47414 * 30.32093 * 19 18 17 35 35 H 1.09001 * 109.46822 * 150.32288 * 19 18 17 36 36 H 1.08001 * 126.24111 * 179.75450 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1490 2.3898 -2.8780 8 7 3.3490 3.1259 -3.6180 9 14 5.9134 2.0968 -3.4168 10 1 6.6011 1.2416 -2.4165 11 1 5.9213 1.4174 -4.7373 12 1 6.6203 3.3982 -3.5256 13 6 2.2430 2.0165 1.1672 14 8 2.6487 3.1627 1.1672 15 7 2.0236 1.3793 2.3344 16 6 2.2622 2.0365 3.5456 17 7 2.7022 3.2619 3.6837 18 7 2.8065 3.5539 5.0482 19 6 3.2596 4.8252 5.6182 20 6 2.4274 2.4717 5.7484 21 6 2.0764 1.4919 4.8415 22 6 1.6112 0.1735 5.1513 23 7 1.2420 -0.8724 5.3970 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.5817 1.6878 -2.0283 30 1 2.0955 3.1410 -1.1383 31 1 3.6750 3.5164 -4.4439 32 1 1.7003 0.4648 2.3344 33 1 4.3407 4.7976 5.7541 34 1 2.9990 5.6398 4.9425 35 1 2.7761 4.9839 6.5821 36 1 2.4021 2.3842 6.8246 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610562670.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:15 Heat of formation + Delta-G solvation = 96.635026 kcal Electronic energy + Delta-G solvation = -21072.505711 eV Core-core repulsion = 17787.830186 eV Total energy + Delta-G solvation = -3284.675525 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.49323 -39.46898 -36.48155 -35.57170 -34.74214 -32.85893 -32.11681 -30.47508 -30.11330 -27.50559 -26.48435 -23.35864 -23.03976 -22.51523 -21.15042 -19.23934 -18.73189 -17.27011 -16.62327 -16.38682 -15.87893 -15.66152 -14.86087 -14.61418 -14.17090 -14.01880 -13.71606 -13.57103 -13.29616 -13.18914 -12.79688 -12.72024 -12.41318 -12.33408 -12.05309 -11.73507 -11.19530 -10.92656 -10.81348 -10.65998 -10.63133 -10.53311 -10.09884 -9.59925 -9.25820 -8.93214 -8.40859 -8.29868 -7.64359 -6.01577 -4.05692 1.34130 2.11036 2.26171 2.64248 3.05534 3.32223 3.39785 3.44502 3.48186 4.01111 4.05243 4.33920 4.46919 4.50037 4.58704 4.98257 5.15836 5.21922 5.28766 5.32182 5.33382 5.58516 5.65420 5.73265 5.99164 6.20783 6.46504 6.59090 6.67660 6.90562 7.23596 7.47728 7.53859 7.57019 7.81851 7.97216 8.25981 8.56833 8.95299 9.24692 9.59566 11.06418 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.018029 B = 0.004938 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.655148 B = 5668.854676 C = 6563.278792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 N -0.605 5.605 4 C 0.261 3.739 5 C -0.525 4.525 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.693 3.307 14 O -0.536 6.536 15 N -0.657 5.657 16 C 0.372 3.628 17 N -0.266 5.266 18 N -0.356 5.356 19 C 0.100 3.900 20 C 0.134 3.866 21 C -0.220 4.220 22 C 0.295 3.705 23 N -0.441 5.441 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.056 0.944 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.262 0.738 32 H 0.411 0.589 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.712 -1.348 18.504 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.341 5.341 4 C 0.142 3.858 5 C -0.564 4.564 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.394 3.606 14 O -0.407 6.407 15 N -0.312 5.312 16 C 0.110 3.890 17 N -0.094 5.094 18 N -0.132 5.132 19 C -0.041 4.041 20 C -0.022 4.022 21 C -0.239 4.239 22 C -0.019 4.019 23 N -0.118 5.118 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.249 0.751 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -3.546 -0.764 17.959 18.322 hybrid contribution 0.726 -0.978 -0.051 1.219 sum -2.820 -1.742 17.908 18.213 Atomic orbital electron populations 1.22261 0.96584 1.01595 1.02592 1.21402 0.93662 0.84295 1.02550 1.47608 1.67199 1.13270 1.05980 1.19255 0.96271 0.93530 0.76733 1.21501 0.96987 1.31762 1.06150 0.92402 1.24913 0.97797 0.94943 0.96386 1.69942 1.35564 1.33555 1.14356 0.86449 0.84734 0.78025 0.78239 1.19858 1.21020 1.20898 1.15958 0.79777 0.85057 0.79839 1.91006 1.49348 1.15747 1.84606 1.42551 1.69809 1.16996 1.01846 1.18879 0.94918 0.90489 0.84747 1.78298 1.26977 1.13563 0.90595 1.48372 1.48620 1.11643 1.04597 1.22008 1.00998 0.82044 0.99017 1.22763 0.95234 0.85839 0.98393 1.15682 1.25375 0.91296 0.91547 1.24450 0.92148 0.91439 0.93887 1.81274 1.12238 1.11273 1.07049 0.92000 0.93116 0.91654 0.89269 0.92576 0.94655 0.93631 0.92804 0.75099 0.90012 0.88394 0.89029 0.79302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.24 37.16 0.38 -1.97 16 2 C 0.11 1.71 5.90 -4.04 -0.02 1.68 16 3 N -0.60 -12.95 2.46 -180.81 -0.44 -13.40 16 4 C 0.26 6.81 5.16 -5.19 -0.03 6.79 16 5 C -0.52 -14.93 9.39 -34.44 -0.32 -15.25 16 6 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 9 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.69 15.15 8.25 -86.92 -0.72 14.43 16 14 O -0.54 -14.04 14.64 5.28 0.08 -13.97 16 15 N -0.66 -11.32 5.30 -15.29 -0.08 -11.40 16 16 C 0.37 6.02 7.81 -154.39 -1.21 4.81 16 17 N -0.27 -4.55 10.72 31.62 0.34 -4.21 16 18 N -0.36 -3.92 3.98 -67.57 -0.27 -4.19 16 19 C 0.10 0.62 11.44 59.85 0.68 1.30 16 20 C 0.13 1.18 11.47 -16.52 -0.19 0.99 16 21 C -0.22 -2.70 5.98 -106.68 -0.64 -3.33 16 22 C 0.30 3.73 15.62 -22.47 -0.35 3.38 16 23 N -0.44 -6.24 18.54 41.84 0.78 -5.46 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.09 1.48 8.07 -51.93 -0.42 1.06 16 28 H 0.06 0.77 6.36 -51.93 -0.33 0.44 16 29 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 30 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.41 5.95 6.34 -40.82 -0.26 5.69 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.19 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 325.77 15.07 4.91 4.91 Total: -1.00 -37.14 325.77 -5.80 -42.95 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -4.32 Total: -0.89 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: -2.51 Total: 14.49 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: 1.06 Total: -64.50 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.08 Total: -13.97 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -37.14 -5.80 -42.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610562670.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.580 kcal (2) G-P(sol) polarization free energy of solvation -37.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds