Wall clock time and date at job start Mon Mar 30 2020 01:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.46921 * 2 1 4 4 C 1.46504 * 120.00271 * 269.99859 * 3 2 1 5 5 C 1.50697 * 109.47338 * 270.00352 * 4 3 2 6 6 H 1.08007 * 119.99991 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00120 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99770 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99889 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47597 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46799 * 120.00652 * 9 7 5 12 12 H 1.48503 * 109.47078 * 240.00405 * 9 7 5 13 13 C 1.34777 * 119.99875 * 90.00602 * 3 2 1 14 14 O 1.21593 * 119.99953 * 179.97438 * 13 3 2 15 15 N 1.34773 * 120.00097 * 0.26801 * 13 3 2 16 16 C 1.39854 * 120.00413 * 179.72677 * 15 13 3 17 17 N 1.30931 * 126.05357 * 359.69501 * 16 15 13 18 18 N 1.39927 * 108.85764 * 179.85182 * 17 16 15 19 19 C 1.46502 * 125.69712 * 180.14514 * 18 17 16 20 20 C 1.34354 * 108.60871 * 0.41826 * 18 17 16 21 21 C 1.38048 * 107.52086 * 359.75678 * 20 18 17 22 22 C 1.43199 * 126.43486 * 180.02562 * 21 20 18 23 23 N 5.47462 * 86.98470 * 99.18205 * 2 1 3 24 24 H 1.09002 * 109.47171 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47318 * 299.99362 * 1 2 3 26 26 H 1.09001 * 109.47466 * 59.99921 * 1 2 3 27 27 H 1.08997 * 109.46785 * 240.00055 * 2 1 3 28 28 H 1.09004 * 109.47223 * 120.00538 * 2 1 3 29 29 H 1.08994 * 109.46719 * 30.00276 * 4 3 2 30 30 H 1.08996 * 109.47068 * 150.00171 * 4 3 2 31 31 H 0.97004 * 119.99826 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00112 * 359.73180 * 15 13 3 33 33 H 1.09002 * 109.47003 * 270.32011 * 19 18 17 34 34 H 1.08994 * 109.47414 * 30.32093 * 19 18 17 35 35 H 1.09001 * 109.46822 * 150.32288 * 19 18 17 36 36 H 1.08001 * 126.24111 * 179.75450 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1490 2.3898 -2.8780 8 7 3.3490 3.1259 -3.6180 9 14 5.9134 2.0968 -3.4168 10 1 6.6011 1.2416 -2.4165 11 1 5.9213 1.4174 -4.7373 12 1 6.6203 3.3982 -3.5256 13 6 2.2430 2.0165 1.1672 14 8 2.6487 3.1627 1.1672 15 7 2.0236 1.3793 2.3344 16 6 2.2622 2.0365 3.5456 17 7 2.7022 3.2619 3.6837 18 7 2.8065 3.5539 5.0482 19 6 3.2596 4.8252 5.6182 20 6 2.4274 2.4717 5.7484 21 6 2.0764 1.4919 4.8415 22 6 1.6112 0.1735 5.1513 23 7 1.2420 -0.8724 5.3970 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.5817 1.6878 -2.0283 30 1 2.0955 3.1410 -1.1383 31 1 3.6750 3.5164 -4.4439 32 1 1.7003 0.4648 2.3344 33 1 4.3407 4.7976 5.7541 34 1 2.9990 5.6398 4.9425 35 1 2.7761 4.9839 6.5821 36 1 2.4021 2.3842 6.8246 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610562670.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:15 Heat of formation + Delta-G solvation = 70.911757 kcal Electronic energy + Delta-G solvation = -21073.621155 eV Core-core repulsion = 17787.830186 eV Total energy + Delta-G solvation = -3285.790969 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.52833 -41.02755 -37.49673 -37.15871 -36.20284 -34.83973 -33.22192 -31.66156 -31.46699 -29.17742 -27.58967 -25.22190 -24.43339 -23.44008 -22.51445 -20.51389 -19.97465 -18.76570 -18.44557 -17.85945 -16.95178 -16.84471 -16.38485 -16.15783 -15.69304 -15.28208 -14.88293 -14.66125 -14.56065 -14.43280 -14.17120 -13.77362 -13.46377 -13.39683 -13.27667 -13.26192 -13.06688 -12.72495 -12.52781 -12.22456 -12.02265 -11.89333 -11.71206 -11.65939 -10.96494 -10.62420 -10.01950 -9.58536 -9.23718 -8.20221 -6.34344 0.57076 1.07384 1.14195 1.37313 1.39709 1.51561 1.66118 1.86217 2.24548 2.40322 2.64651 2.83430 3.09367 3.18982 3.69071 3.96820 4.03485 4.32519 4.34840 4.44198 4.56202 4.57612 4.64463 4.83974 4.86702 4.92631 5.00547 5.20595 5.32719 5.52883 5.59440 5.70167 5.89584 5.99344 6.08170 6.56052 6.62191 6.74167 7.04553 7.32219 7.60565 8.86812 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.018029 B = 0.004938 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.655148 B = 5668.854676 C = 6563.278792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.611 5.611 4 C 0.279 3.721 5 C -0.541 4.541 6 H 0.050 0.950 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.270 1.270 11 H -0.268 1.268 12 H -0.281 1.281 13 C 0.692 3.308 14 O -0.589 6.589 15 N -0.645 5.645 16 C 0.346 3.654 17 N -0.330 5.330 18 N -0.352 5.352 19 C 0.089 3.911 20 C 0.176 3.824 21 C -0.234 4.234 22 C 0.316 3.684 23 N -0.469 5.469 24 H 0.097 0.903 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.031 0.969 30 H 0.000 1.000 31 H 0.267 0.733 32 H 0.423 0.577 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.142 0.858 36 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.190 -2.376 21.087 21.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.024 4.024 3 N -0.346 5.346 4 C 0.158 3.842 5 C -0.580 4.580 6 H 0.068 0.932 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.195 1.195 11 H -0.193 1.193 12 H -0.207 1.207 13 C 0.393 3.607 14 O -0.465 6.465 15 N -0.300 5.300 16 C 0.085 3.915 17 N -0.159 5.159 18 N -0.129 5.129 19 C -0.050 4.050 20 C 0.019 3.981 21 C -0.253 4.253 22 C 0.002 3.998 23 N -0.148 5.148 24 H 0.116 0.884 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.048 0.952 30 H 0.018 0.982 31 H 0.076 0.924 32 H 0.263 0.737 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.160 0.840 36 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -3.049 -1.838 20.588 20.893 hybrid contribution 0.554 -0.569 -0.723 1.074 sum -2.496 -2.406 19.864 20.164 Atomic orbital electron populations 1.22180 0.94392 1.03648 1.01838 1.21713 0.95435 0.81472 1.03735 1.47481 1.67468 1.15038 1.04620 1.18685 0.95360 0.91419 0.78717 1.21731 0.97910 1.31933 1.06430 0.93159 1.25796 1.02215 0.94475 0.96374 1.70052 1.37590 1.34204 1.14821 0.85385 0.79209 0.77957 0.78324 1.19486 1.19313 1.20728 1.16082 0.79236 0.84551 0.80862 1.90954 1.51674 1.18141 1.85699 1.42124 1.69439 1.17262 1.01222 1.19140 0.96139 0.91041 0.85144 1.78138 1.28230 1.14608 0.94939 1.48692 1.47859 1.13522 1.02782 1.22466 1.02424 0.79615 1.00448 1.23669 0.90829 0.83326 1.00325 1.15725 1.27179 0.91971 0.90406 1.24336 0.91257 0.91091 0.93075 1.81302 1.13500 1.11962 1.07999 0.88430 0.92934 0.93350 0.89669 0.89761 0.95152 0.98152 0.92392 0.73660 0.88727 0.90046 0.83967 0.73084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.31 10.24 71.98 0.74 -3.57 16 2 C 0.10 3.19 5.90 86.38 0.51 3.70 16 3 N -0.61 -27.16 2.46 -844.22 -2.07 -29.24 16 4 C 0.28 15.38 5.16 85.63 0.44 15.82 16 5 C -0.54 -31.80 9.39 25.60 0.24 -31.56 16 6 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.61 5.46 84.65 0.46 1.07 16 8 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 9 Si 0.97 45.69 29.54 68.60 2.03 47.72 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 13 C 0.69 31.53 8.25 179.06 1.48 33.01 16 14 O -0.59 -32.74 14.64 -4.01 -0.06 -32.80 16 15 N -0.64 -22.53 5.30 -320.56 -1.70 -24.23 16 16 C 0.35 11.15 7.81 133.86 1.05 12.19 16 17 N -0.33 -11.40 10.72 -53.87 -0.58 -11.98 16 18 N -0.35 -6.94 3.98 -367.70 -1.46 -8.41 16 19 C 0.09 0.85 11.44 127.77 1.46 2.31 16 20 C 0.18 2.38 11.47 84.26 0.97 3.35 16 21 C -0.23 -5.23 5.98 -21.20 -0.13 -5.36 16 22 C 0.32 7.30 15.62 88.33 1.38 8.68 16 23 N -0.47 -12.40 18.54 19.00 0.35 -12.05 16 24 H 0.10 1.91 8.14 -2.39 -0.02 1.90 16 25 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 2.82 8.07 -2.39 -0.02 2.80 16 28 H 0.08 2.22 6.36 -2.38 -0.02 2.21 16 29 H 0.03 1.67 8.07 -2.39 -0.02 1.65 16 30 H 0.00 0.02 7.42 -2.39 -0.02 0.00 16 31 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.42 12.06 6.34 -92.71 -0.59 11.47 16 33 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.14 -0.07 8.14 -2.39 -0.02 -0.09 16 36 H 0.25 0.08 8.06 -2.91 -0.02 0.05 16 Total: -1.00 -87.04 325.77 5.91 -81.12 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 0.53 Total: 6.38 kcal Atomic # 6 Polarization: 31.04 SS G_CDS: 8.59 Total: 39.63 kcal Atomic # 7 Polarization: -136.88 SS G_CDS: -5.18 Total: -142.06 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -0.06 Total: -32.80 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -87.04 5.91 -81.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610562670.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.036 kcal (2) G-P(sol) polarization free energy of solvation -87.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds