Wall clock time and date at job start Mon Mar 30 2020 02:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46493 * 120.00126 * 2 1 4 4 C 1.53001 * 109.46980 * 269.99673 * 3 2 1 5 5 C 1.47207 * 109.47103 * 180.02562 * 4 3 2 6 6 N 4.80458 * 118.48798 * 340.02527 * 2 1 3 7 7 C 1.34785 * 119.99657 * 179.97438 * 2 1 3 8 8 O 1.21595 * 119.99655 * 180.02562 * 7 2 1 9 9 N 1.34773 * 119.99880 * 359.97438 * 7 2 1 10 10 C 1.40202 * 119.99643 * 180.02562 * 9 7 2 11 11 C 1.40403 * 125.97095 * 0.02562 * 10 9 7 12 12 C 1.35240 * 107.86459 * 179.74164 * 11 10 9 13 13 N 1.34965 * 107.86272 * 0.36524 * 12 11 10 14 14 C 1.46495 * 125.98197 * 179.89938 * 13 12 11 15 15 C 1.50702 * 109.47571 * 124.71610 * 14 13 12 16 16 H 1.08002 * 119.99446 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00072 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 179.72119 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 269.72576 * 19 17 15 21 21 H 1.48499 * 109.47026 * 29.72423 * 19 17 15 22 22 H 1.48496 * 109.47474 * 149.72459 * 19 17 15 23 23 N 1.31210 * 125.97221 * 179.97438 * 10 9 7 24 24 H 1.08990 * 109.47389 * 270.00133 * 1 2 3 25 25 H 1.09001 * 109.46715 * 30.00226 * 1 2 3 26 26 H 1.09003 * 109.47226 * 149.99969 * 1 2 3 27 27 H 1.08999 * 109.47310 * 29.99910 * 3 2 1 28 28 H 1.08998 * 109.47498 * 150.00059 * 3 2 1 29 29 H 1.09001 * 109.47008 * 299.99798 * 4 3 2 30 30 H 1.08997 * 109.47134 * 60.00187 * 4 3 2 31 31 H 0.96992 * 120.00253 * 0.02562 * 9 7 2 32 32 H 1.07996 * 126.06696 * 359.96955 * 11 10 9 33 33 H 1.08001 * 126.07362 * 180.25936 * 12 11 10 34 34 H 1.09000 * 109.47378 * 4.71269 * 14 13 12 35 35 H 1.09001 * 109.47153 * 244.71390 * 14 13 12 36 36 H 0.96999 * 120.00128 * 180.27192 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.1892 2.9848 -1.4425 6 7 3.7567 3.9688 -1.4425 7 6 2.1389 -1.1673 0.0005 8 8 3.3548 -1.1673 0.0010 9 7 1.4649 -2.3344 0.0016 10 6 2.1659 -3.5486 0.0027 11 6 3.5623 -3.6947 0.0033 12 6 3.8410 -5.0180 0.0101 13 7 2.6693 -5.6879 0.0055 14 6 2.5104 -7.1442 0.0080 15 6 1.6454 -7.5532 1.1723 16 1 1.2536 -6.8033 1.8434 17 6 1.3552 -8.8848 1.3811 18 7 0.6048 -9.2422 2.4003 19 14 2.0335 -10.1819 0.2206 20 1 1.0701 -10.4078 -0.8866 21 1 3.3291 -9.7179 -0.3374 22 1 2.2406 -11.4510 0.9633 23 7 1.6316 -4.7470 0.0042 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6085 2.0283 0.5138 28 1 3.1499 1.1384 0.5138 29 1 3.0417 0.9506 -1.9563 30 1 1.5002 1.8406 -1.9564 31 1 0.4950 -2.3344 0.0016 32 1 4.2855 -2.8926 0.0026 33 1 4.8262 -5.4604 0.0162 34 1 3.4887 -7.6163 0.0987 35 1 2.0396 -7.4600 -0.9230 36 1 0.4038 -10.1793 2.5496 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610661175.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:49 Heat of formation + Delta-G solvation = 98.097706 kcal Electronic energy + Delta-G solvation = -20325.068938 eV Core-core repulsion = 17040.456839 eV Total energy + Delta-G solvation = -3284.612098 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.93961 -39.89980 -37.30160 -35.95327 -34.93401 -33.35689 -32.03098 -30.98317 -29.38625 -27.36673 -27.04609 -24.81707 -22.60665 -21.31669 -20.24128 -19.40677 -18.19139 -17.96358 -17.10854 -16.67879 -15.98943 -15.80313 -15.41675 -14.88778 -14.54328 -14.26255 -13.98109 -13.63672 -13.37431 -13.13516 -13.04323 -12.88684 -12.62591 -12.54452 -12.28987 -12.18973 -12.04569 -11.37116 -11.17708 -10.90164 -10.54170 -10.18737 -10.01870 -9.79229 -9.53625 -9.10179 -8.77463 -8.19545 -7.50963 -6.24312 -4.26593 2.08124 2.45676 2.47604 2.55982 2.98722 3.14942 3.19551 3.20925 3.28699 3.70646 3.77624 4.01309 4.22089 4.52761 4.59123 4.71022 4.95266 5.03595 5.09092 5.25600 5.34035 5.41640 5.52555 5.68969 5.95866 6.19681 6.34591 6.44075 6.52699 6.69258 6.77246 7.23090 7.26329 7.38929 7.73166 7.81921 8.32878 8.44375 8.56676 8.85491 9.30731 10.88366 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.043903 B = 0.003066 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.616510 B = 9129.218388 C = 9524.875865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.631 5.631 3 C 0.141 3.859 4 C -0.046 4.046 5 C 0.213 3.787 6 N -0.437 5.437 7 C 0.715 3.285 8 O -0.562 6.562 9 N -0.641 5.641 10 C 0.277 3.723 11 C -0.282 4.282 12 C 0.051 3.949 13 N -0.320 5.320 14 C 0.232 3.768 15 C -0.534 4.534 16 H 0.086 0.914 17 C 0.076 3.924 18 N -0.888 5.888 19 Si 0.874 3.126 20 H -0.272 1.272 21 H -0.265 1.265 22 H -0.281 1.281 23 N -0.300 5.300 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.408 0.592 32 H 0.163 0.837 33 H 0.168 0.832 34 H 0.053 0.947 35 H 0.037 0.963 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.132 17.570 -7.188 18.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.369 5.369 3 C 0.016 3.984 4 C -0.088 4.088 5 C -0.106 4.106 6 N -0.114 5.114 7 C 0.416 3.584 8 O -0.437 6.437 9 N -0.292 5.292 10 C 0.022 3.978 11 C -0.313 4.313 12 C -0.098 4.098 13 N -0.102 5.102 14 C 0.113 3.887 15 C -0.572 4.572 16 H 0.104 0.896 17 C -0.128 4.128 18 N -0.525 5.525 19 Si 0.701 3.299 20 H -0.197 1.197 21 H -0.189 1.189 22 H -0.206 1.206 23 N -0.130 5.130 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.115 0.885 29 H 0.134 0.866 30 H 0.128 0.872 31 H 0.245 0.755 32 H 0.180 0.820 33 H 0.186 0.814 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.411 18.070 -7.083 19.413 hybrid contribution 0.092 -0.838 -0.494 0.978 sum 0.503 17.232 -7.577 18.831 Atomic orbital electron populations 1.21868 0.79125 1.03526 1.02564 1.46886 1.06635 1.04314 1.79082 1.21154 0.99136 0.83960 0.94163 1.19748 1.00101 0.88073 1.00856 1.28953 0.93661 0.94407 0.93555 1.81254 1.09768 1.12266 1.08070 1.15566 0.85114 0.79780 0.77990 1.90882 1.11101 1.85404 1.56356 1.41532 1.09662 1.01811 1.76203 1.18803 0.90944 0.85142 1.02913 1.21531 0.94222 0.96041 1.19519 1.22555 0.92224 0.92485 1.02512 1.48597 1.01797 1.06943 1.52865 1.20046 0.99092 0.70310 0.99234 1.21112 1.31295 0.94133 1.10677 0.89642 1.24837 0.94556 0.98100 0.95306 1.69872 1.36637 1.17502 1.28511 0.86889 0.79995 0.81756 0.81299 1.19720 1.18944 1.20619 1.77382 1.12515 0.95078 1.28064 0.91930 0.90247 0.90986 0.89334 0.88459 0.86612 0.87228 0.75491 0.81959 0.81431 0.92899 0.94491 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.33 10.20 59.85 0.61 0.94 16 2 N -0.63 -4.97 2.87 -187.36 -0.54 -5.50 16 3 C 0.14 0.86 5.36 -4.05 -0.02 0.83 16 4 C -0.05 -0.23 6.03 -29.51 -0.18 -0.41 16 5 C 0.21 1.71 15.43 -20.76 -0.32 1.39 16 6 N -0.44 -4.96 18.54 42.15 0.78 -4.17 16 7 C 0.71 9.14 8.25 -86.91 -0.72 8.42 16 8 O -0.56 -8.91 13.05 5.28 0.07 -8.84 16 9 N -0.64 -9.09 5.32 -15.50 -0.08 -9.17 16 10 C 0.28 5.24 8.11 -154.36 -1.25 3.98 16 11 C -0.28 -5.25 9.61 -39.84 -0.38 -5.63 16 12 C 0.05 0.96 11.44 -17.24 -0.20 0.76 16 13 N -0.32 -7.05 3.67 -62.56 -0.23 -7.28 16 14 C 0.23 5.38 5.33 -5.20 -0.03 5.35 16 15 C -0.53 -14.82 9.79 -34.44 -0.34 -15.15 16 16 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 17 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 18 N -0.89 -26.28 13.96 55.43 0.77 -25.51 16 19 Si 0.87 19.85 27.47 -169.99 -4.67 15.19 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.26 -5.58 6.54 56.52 0.37 -5.21 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 N -0.30 -6.61 12.42 31.44 0.39 -6.22 16 24 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.08 0.16 8.07 -51.93 -0.42 -0.26 16 26 H 0.07 0.33 6.37 -51.93 -0.33 0.00 16 27 H 0.09 0.33 8.07 -51.93 -0.42 -0.09 16 28 H 0.10 0.78 7.42 -51.93 -0.39 0.40 16 29 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.41 4.69 6.55 -40.82 -0.27 4.42 16 32 H 0.16 2.94 5.91 -52.49 -0.31 2.63 16 33 H 0.17 2.48 8.06 -52.49 -0.42 2.06 16 34 H 0.05 1.13 7.12 -51.93 -0.37 0.76 16 35 H 0.04 0.84 7.57 -51.93 -0.39 0.45 16 36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 318.98 15.07 4.81 4.81 Total: -1.00 -35.66 318.98 -5.79 -41.46 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -4.18 Total: 2.76 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -2.92 Total: 2.49 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 1.10 Total: -57.86 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.07 Total: -8.84 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.67 Total: 15.19 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.66 -5.79 -41.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610661175.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.556 kcal (2) G-P(sol) polarization free energy of solvation -35.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds