Wall clock time and date at job start Mon Mar 30 2020 01:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47673 * 2 1 4 4 C 1.46496 * 120.00064 * 94.95249 * 3 2 1 5 5 C 1.50699 * 109.47526 * 270.00775 * 4 3 2 6 6 H 1.08005 * 119.99912 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00303 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00351 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99992 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47048 * 179.97438 * 9 7 5 11 11 H 1.48491 * 109.47210 * 299.99732 * 9 7 5 12 12 H 1.48506 * 109.47000 * 59.99701 * 9 7 5 13 13 C 1.34767 * 119.99959 * 274.95871 * 3 2 1 14 14 O 1.21289 * 120.00228 * 174.87620 * 13 3 2 15 15 C 1.50699 * 120.00215 * 354.87117 * 13 3 2 16 16 H 1.09001 * 112.82640 * 46.08299 * 15 13 3 17 17 C 1.53520 * 113.59126 * 274.97022 * 15 13 3 18 18 C 1.51621 * 87.24857 * 245.40524 * 17 15 13 19 19 C 1.38394 * 147.48902 * 180.02562 * 18 17 15 20 20 C 1.38538 * 120.19362 * 179.91065 * 19 18 17 21 21 C 1.38466 * 120.00825 * 0.02618 * 20 19 18 22 22 F 1.35097 * 120.05098 * 179.97438 * 21 20 19 23 23 C 1.38319 * 119.90218 * 359.97438 * 21 20 19 24 24 C 1.38341 * 120.30852 * 359.97438 * 23 21 20 25 25 H 1.09000 * 109.47543 * 174.98153 * 1 2 3 26 26 H 1.09001 * 109.47251 * 294.98920 * 1 2 3 27 27 H 1.09007 * 109.46730 * 54.98213 * 1 2 3 28 28 H 1.09001 * 109.47316 * 239.99492 * 2 1 3 29 29 H 1.09005 * 109.46952 * 119.99945 * 2 1 3 30 30 H 1.08999 * 109.47458 * 150.00121 * 4 3 2 31 31 H 1.09007 * 109.47084 * 30.00008 * 4 3 2 32 32 H 0.96998 * 120.00213 * 180.02562 * 8 7 5 33 33 H 1.08998 * 113.58245 * 359.97438 * 17 15 13 34 34 H 1.08997 * 113.58883 * 130.73577 * 17 15 13 35 35 H 1.08000 * 119.81765 * 359.95584 * 19 18 17 36 36 H 1.08000 * 119.95752 * 180.02562 * 20 19 18 37 37 H 1.08002 * 119.84915 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3659 2.0352 1.2639 5 6 1.1506 2.7313 1.8202 6 1 0.2131 2.6910 1.2854 7 6 1.2356 3.4206 3.0112 8 7 2.3772 3.4703 3.6622 9 14 -0.2708 4.2841 3.7003 10 1 0.0815 4.9470 4.9816 11 1 -0.7448 5.3027 2.7294 12 1 -1.3466 3.2884 3.9380 13 6 2.1480 2.0501 -1.1628 14 8 2.4629 3.2214 -1.1568 15 6 1.9017 1.3428 -2.4705 16 1 0.9912 0.7436 -2.4622 17 6 3.1287 0.5883 -3.0015 18 6 3.1350 1.5637 -4.1623 19 6 3.7350 1.9713 -5.3410 20 6 3.2307 3.0552 -6.0409 21 6 2.1235 3.7347 -5.5616 22 9 1.6313 4.7922 -6.2432 23 6 1.5221 3.3292 -4.3838 24 6 2.0214 2.2467 -3.6817 25 1 -0.3634 -1.0237 -0.0899 26 1 -0.3634 0.4341 0.9315 27 1 -0.3633 0.5898 -0.8417 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.1555 2.7662 1.0898 31 1 2.7140 1.2873 1.9764 32 1 2.4369 3.9549 4.5003 33 1 4.0042 0.6716 -2.3576 34 1 2.9154 -0.4395 -3.2950 35 1 4.5984 1.4413 -5.7153 36 1 3.7016 3.3698 -6.9605 37 1 0.6584 3.8595 -4.0110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619430375.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:12 Heat of formation + Delta-G solvation = -19.307066 kcal Electronic energy + Delta-G solvation = -21177.409617 eV Core-core repulsion = 17835.493753 eV Total energy + Delta-G solvation = -3341.915864 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.86979 -40.78215 -38.47317 -35.33769 -34.91542 -32.71606 -30.82886 -30.05865 -28.12982 -26.74349 -25.12115 -23.17900 -22.79410 -21.82333 -20.64511 -18.47846 -17.23753 -16.63986 -16.61208 -16.39334 -15.56192 -15.32512 -15.24180 -14.64681 -14.32192 -13.92345 -13.60411 -13.46995 -13.21826 -12.84608 -12.65621 -12.28413 -12.12653 -11.79993 -11.63543 -11.47170 -11.36426 -11.15172 -10.93884 -10.74767 -10.57528 -10.46115 -10.07690 -9.61681 -9.13722 -8.81126 -8.46938 -8.42752 -7.71029 -6.04213 -4.08218 1.09815 1.22896 3.21989 3.31797 3.36489 3.40324 3.48735 3.81841 3.99116 4.17245 4.44616 4.48125 4.61529 4.93555 4.98146 5.16861 5.29366 5.31032 5.37642 5.54162 5.57982 5.68062 5.70974 5.79352 5.88058 5.95092 6.08984 6.11259 6.16096 6.27364 6.63402 6.69776 6.87045 7.03500 7.40282 7.52585 7.91894 8.23098 8.36575 8.88822 9.04571 9.56519 11.04031 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020993 B = 0.004727 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.426489 B = 5921.671642 C = 6560.364864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.110 3.890 3 N -0.595 5.595 4 C 0.247 3.753 5 C -0.522 4.522 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.286 1.286 11 H -0.277 1.277 12 H -0.277 1.277 13 C 0.519 3.481 14 O -0.527 6.527 15 C -0.072 4.072 16 H 0.119 0.881 17 C -0.053 4.053 18 C -0.137 4.137 19 C -0.069 4.069 20 C -0.153 4.153 21 C 0.098 3.902 22 F -0.140 7.140 23 C -0.115 4.115 24 C -0.065 4.065 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.033 0.967 32 H 0.263 0.737 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.129 0.871 36 H 0.137 0.863 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.386 -9.318 -15.902 18.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.014 4.014 3 N -0.327 5.327 4 C 0.128 3.872 5 C -0.561 4.561 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.212 1.212 11 H -0.202 1.202 12 H -0.203 1.203 13 C 0.304 3.696 14 O -0.404 6.404 15 C -0.093 4.093 16 H 0.136 0.864 17 C -0.090 4.090 18 C -0.138 4.138 19 C -0.087 4.087 20 C -0.172 4.172 21 C 0.079 3.921 22 F -0.119 7.119 23 C -0.134 4.134 24 C -0.065 4.065 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.147 0.853 36 H 0.155 0.845 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.636 -8.559 -15.721 17.911 hybrid contribution -1.071 0.820 0.384 1.403 sum -0.434 -7.739 -15.336 17.184 Atomic orbital electron populations 1.22249 0.96391 1.00803 1.03465 1.21417 0.94449 0.83684 1.01850 1.48246 1.63412 1.13149 1.07857 1.19312 0.96802 0.93038 0.78049 1.21387 0.96381 1.32555 1.05802 0.92400 1.24924 0.96165 0.96181 0.96816 1.69914 1.24563 1.42596 1.16441 0.86591 0.82915 0.79917 0.78196 1.21196 1.20226 1.20262 1.19681 0.78854 0.86922 0.84172 1.90713 1.47219 1.15536 1.86897 1.21761 1.00816 0.95437 0.91330 0.86365 1.21745 0.97502 0.97319 0.92397 1.22283 0.96876 0.99046 0.95572 1.20150 0.99424 0.95842 0.93286 1.21013 0.96904 0.97415 1.01864 1.17303 0.95498 0.87083 0.92234 1.91490 1.87236 1.54273 1.78861 1.20193 1.02024 0.97356 0.93819 1.21501 0.95943 0.94108 0.94974 0.92636 0.90817 0.93194 0.92016 0.90313 0.94064 0.94903 0.92694 0.88429 0.88187 0.85350 0.84538 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 10.04 37.15 0.37 -2.06 16 2 C 0.11 1.64 5.84 -4.04 -0.02 1.62 16 3 N -0.59 -12.05 2.47 -175.06 -0.43 -12.48 16 4 C 0.25 6.30 5.16 -5.20 -0.03 6.27 16 5 C -0.52 -14.56 9.35 -34.44 -0.32 -14.88 16 6 H 0.06 1.61 7.65 -52.48 -0.40 1.21 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 9 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 13 C 0.52 10.56 7.08 -10.99 -0.08 10.49 16 14 O -0.53 -13.46 15.95 5.55 0.09 -13.37 16 15 C -0.07 -1.07 2.97 -92.22 -0.27 -1.34 16 16 H 0.12 1.46 6.52 -51.93 -0.34 1.12 16 17 C -0.05 -0.61 7.34 -27.17 -0.20 -0.81 16 18 C -0.14 -1.82 7.49 -103.77 -0.78 -2.60 16 19 C -0.07 -0.80 10.05 -39.41 -0.40 -1.19 16 20 C -0.15 -1.83 10.04 -39.39 -0.40 -2.22 16 21 C 0.10 1.39 7.30 -39.47 -0.29 1.10 16 22 F -0.14 -2.00 17.27 2.25 0.04 -1.96 16 23 C -0.12 -1.79 10.01 -39.51 -0.40 -2.18 16 24 C -0.06 -1.00 6.42 -103.79 -0.67 -1.67 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 1.27 7.94 -51.93 -0.41 0.85 16 27 H 0.05 0.71 7.20 -51.93 -0.37 0.34 16 28 H 0.06 0.70 6.46 -51.93 -0.34 0.36 16 29 H 0.08 1.15 7.84 -51.93 -0.41 0.74 16 30 H 0.04 1.20 7.50 -51.93 -0.39 0.81 16 31 H 0.03 0.84 7.86 -51.92 -0.41 0.43 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.10 1.18 7.99 -51.93 -0.41 0.77 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.13 2.01 8.06 -52.49 -0.42 1.58 16 LS Contribution 320.09 15.07 4.82 4.82 Total: -1.00 -33.35 320.09 -8.06 -41.41 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -4.73 Total: -1.68 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -3.57 Total: -7.84 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.30 Total: -38.22 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.09 Total: -13.37 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.35 -8.06 -41.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619430375.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.103 kcal (2) G-P(sol) polarization free energy of solvation -33.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds