Wall clock time and date at job start Mon Mar 30 2020 01:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47673 * 2 1 4 4 C 1.46496 * 120.00064 * 94.95249 * 3 2 1 5 5 C 1.50699 * 109.47526 * 270.00775 * 4 3 2 6 6 H 1.08005 * 119.99912 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00303 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00351 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99992 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47048 * 179.97438 * 9 7 5 11 11 H 1.48491 * 109.47210 * 299.99732 * 9 7 5 12 12 H 1.48506 * 109.47000 * 59.99701 * 9 7 5 13 13 C 1.34767 * 119.99959 * 274.95871 * 3 2 1 14 14 O 1.21289 * 120.00228 * 174.87620 * 13 3 2 15 15 C 1.50699 * 120.00215 * 354.87117 * 13 3 2 16 16 H 1.09001 * 112.82640 * 46.08299 * 15 13 3 17 17 C 1.53520 * 113.59126 * 274.97022 * 15 13 3 18 18 C 1.51621 * 87.24857 * 245.40524 * 17 15 13 19 19 C 1.38394 * 147.48902 * 180.02562 * 18 17 15 20 20 C 1.38538 * 120.19362 * 179.91065 * 19 18 17 21 21 C 1.38466 * 120.00825 * 0.02618 * 20 19 18 22 22 F 1.35097 * 120.05098 * 179.97438 * 21 20 19 23 23 C 1.38319 * 119.90218 * 359.97438 * 21 20 19 24 24 C 1.38341 * 120.30852 * 359.97438 * 23 21 20 25 25 H 1.09000 * 109.47543 * 174.98153 * 1 2 3 26 26 H 1.09001 * 109.47251 * 294.98920 * 1 2 3 27 27 H 1.09007 * 109.46730 * 54.98213 * 1 2 3 28 28 H 1.09001 * 109.47316 * 239.99492 * 2 1 3 29 29 H 1.09005 * 109.46952 * 119.99945 * 2 1 3 30 30 H 1.08999 * 109.47458 * 150.00121 * 4 3 2 31 31 H 1.09007 * 109.47084 * 30.00008 * 4 3 2 32 32 H 0.96998 * 120.00213 * 180.02562 * 8 7 5 33 33 H 1.08998 * 113.58245 * 359.97438 * 17 15 13 34 34 H 1.08997 * 113.58883 * 130.73577 * 17 15 13 35 35 H 1.08000 * 119.81765 * 359.95584 * 19 18 17 36 36 H 1.08000 * 119.95752 * 180.02562 * 20 19 18 37 37 H 1.08002 * 119.84915 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3659 2.0352 1.2639 5 6 1.1506 2.7313 1.8202 6 1 0.2131 2.6910 1.2854 7 6 1.2356 3.4206 3.0112 8 7 2.3772 3.4703 3.6622 9 14 -0.2708 4.2841 3.7003 10 1 0.0815 4.9470 4.9816 11 1 -0.7448 5.3027 2.7294 12 1 -1.3466 3.2884 3.9380 13 6 2.1480 2.0501 -1.1628 14 8 2.4629 3.2214 -1.1568 15 6 1.9017 1.3428 -2.4705 16 1 0.9912 0.7436 -2.4622 17 6 3.1287 0.5883 -3.0015 18 6 3.1350 1.5637 -4.1623 19 6 3.7350 1.9713 -5.3410 20 6 3.2307 3.0552 -6.0409 21 6 2.1235 3.7347 -5.5616 22 9 1.6313 4.7922 -6.2432 23 6 1.5221 3.3292 -4.3838 24 6 2.0214 2.2467 -3.6817 25 1 -0.3634 -1.0237 -0.0899 26 1 -0.3634 0.4341 0.9315 27 1 -0.3633 0.5898 -0.8417 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.1555 2.7662 1.0898 31 1 2.7140 1.2873 1.9764 32 1 2.4369 3.9549 4.5003 33 1 4.0042 0.6716 -2.3576 34 1 2.9154 -0.4395 -3.2950 35 1 4.5984 1.4413 -5.7153 36 1 3.7016 3.3698 -6.9605 37 1 0.6584 3.8595 -4.0110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619430375.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:11 Heat of formation + Delta-G solvation = -39.140460 kcal Electronic energy + Delta-G solvation = -21178.269658 eV Core-core repulsion = 17835.493753 eV Total energy + Delta-G solvation = -3342.775904 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.95495 -41.96226 -39.91548 -36.96980 -36.04458 -34.79147 -31.84888 -31.55551 -29.69749 -28.18561 -26.35999 -24.80862 -24.15418 -23.05343 -21.75652 -19.88566 -18.69141 -18.33026 -18.02601 -17.59837 -17.00798 -16.64955 -16.43894 -16.20614 -15.83464 -15.11302 -14.91686 -14.60841 -14.52122 -14.22742 -14.00406 -13.84357 -13.57407 -13.29723 -12.98505 -12.83296 -12.75932 -12.64961 -12.54541 -12.25927 -12.14676 -11.77408 -11.66540 -11.55405 -10.65817 -10.63252 -9.96026 -9.51736 -9.43376 -8.22005 -6.34818 0.07202 0.20111 1.34070 1.38227 1.45038 1.71516 2.24801 2.39266 2.60168 2.83729 3.07816 3.18880 3.48245 3.52796 3.72538 3.95822 4.15289 4.24458 4.34296 4.49976 4.55311 4.63454 4.67524 4.77741 4.89730 4.99168 5.00966 5.05097 5.08266 5.10575 5.19120 5.22893 5.51384 5.60358 5.60995 5.86529 5.88394 6.07960 6.70694 6.79274 7.28781 7.46556 8.84916 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020993 B = 0.004727 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.426489 B = 5921.671642 C = 6560.364864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.102 3.898 3 N -0.598 5.598 4 C 0.261 3.739 5 C -0.534 4.534 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.960 3.040 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.259 1.259 13 C 0.511 3.489 14 O -0.594 6.594 15 C -0.067 4.067 16 H 0.147 0.853 17 C -0.035 4.035 18 C -0.135 4.135 19 C -0.064 4.064 20 C -0.143 4.143 21 C 0.078 3.922 22 F -0.147 7.147 23 C -0.141 4.141 24 C -0.105 4.105 25 H 0.098 0.902 26 H 0.036 0.964 27 H 0.048 0.952 28 H 0.112 0.888 29 H 0.081 0.919 30 H -0.006 1.006 31 H 0.028 0.972 32 H 0.266 0.734 33 H 0.093 0.907 34 H 0.151 0.849 35 H 0.169 0.831 36 H 0.168 0.832 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.310 -11.934 -17.639 21.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.020 4.020 3 N -0.328 5.328 4 C 0.140 3.860 5 C -0.573 4.573 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.785 3.215 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.184 1.184 13 C 0.299 3.701 14 O -0.475 6.475 15 C -0.088 4.088 16 H 0.165 0.835 17 C -0.072 4.072 18 C -0.135 4.135 19 C -0.081 4.081 20 C -0.161 4.161 21 C 0.059 3.941 22 F -0.125 7.125 23 C -0.160 4.160 24 C -0.105 4.105 25 H 0.116 0.884 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.130 0.870 29 H 0.099 0.901 30 H 0.012 0.988 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.169 0.831 35 H 0.186 0.814 36 H 0.186 0.814 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.538 -11.236 -17.468 20.777 hybrid contribution -1.012 1.637 0.884 2.118 sum -0.474 -9.599 -16.585 19.168 Atomic orbital electron populations 1.22201 0.95707 1.03095 1.01401 1.21827 0.94983 0.80773 1.04429 1.48257 1.63210 1.15152 1.06181 1.18768 0.94739 0.92087 0.80438 1.21658 0.96773 1.32875 1.05977 0.93013 1.25790 0.99136 0.96877 0.97267 1.70028 1.26514 1.43439 1.16883 0.85579 0.79681 0.78837 0.77387 1.20301 1.20856 1.18365 1.20708 0.77093 0.86395 0.85882 1.90672 1.50100 1.18683 1.88032 1.21786 1.03822 0.95755 0.87443 0.83509 1.21834 0.95367 0.99132 0.90859 1.22628 0.95674 0.98899 0.96280 1.20607 0.99926 0.95302 0.92304 1.21433 0.95437 0.96643 1.02611 1.17541 0.96674 0.87624 0.92288 1.91465 1.87517 1.54683 1.78883 1.20301 1.02429 0.98176 0.95078 1.21739 0.97847 0.95087 0.95845 0.88373 0.94520 0.93328 0.87048 0.90073 0.98820 0.95384 0.92500 0.88840 0.83139 0.81355 0.81434 0.86708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.39 10.04 71.98 0.72 -3.67 16 2 C 0.10 2.81 5.84 86.38 0.50 3.32 16 3 N -0.60 -24.45 2.47 -826.16 -2.04 -26.49 16 4 C 0.26 13.94 5.16 85.63 0.44 14.38 16 5 C -0.53 -30.84 9.35 25.60 0.24 -30.60 16 6 H 0.05 2.98 7.65 -2.91 -0.02 2.95 16 7 C 0.01 0.47 5.46 84.65 0.46 0.93 16 8 N -0.93 -56.50 13.29 21.44 0.28 -56.22 16 9 Si 0.96 45.64 29.54 68.60 2.03 47.66 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 12 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 13 C 0.51 21.17 7.08 87.66 0.62 21.79 16 14 O -0.59 -32.04 15.95 -3.06 -0.05 -32.08 16 15 C -0.07 -1.87 2.97 -11.83 -0.04 -1.91 16 16 H 0.15 3.16 6.52 -2.39 -0.02 3.14 16 17 C -0.04 -0.68 7.34 30.31 0.22 -0.46 16 18 C -0.13 -3.18 7.49 -19.31 -0.14 -3.32 16 19 C -0.06 -1.24 10.05 22.38 0.23 -1.01 16 20 C -0.14 -3.04 10.04 22.40 0.22 -2.82 16 21 C 0.08 2.19 7.30 22.34 0.16 2.35 16 22 F -0.15 -4.25 17.27 44.97 0.78 -3.47 16 23 C -0.14 -4.52 10.01 22.31 0.22 -4.29 16 24 C -0.10 -3.17 6.42 -19.32 -0.12 -3.30 16 25 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.04 1.23 7.94 -2.39 -0.02 1.21 16 27 H 0.05 1.29 7.20 -2.38 -0.02 1.27 16 28 H 0.11 2.01 6.46 -2.39 -0.02 1.99 16 29 H 0.08 2.22 7.84 -2.38 -0.02 2.21 16 30 H -0.01 -0.39 7.50 -2.39 -0.02 -0.41 16 31 H 0.03 1.50 7.86 -2.38 -0.02 1.48 16 32 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.09 1.97 7.99 -2.39 -0.02 1.95 16 34 H 0.15 1.45 8.14 -2.39 -0.02 1.44 16 35 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 36 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 37 H 0.11 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -79.16 320.09 5.83 -73.33 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 1.08 Total: 5.88 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 3.75 Total: -8.61 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -1.75 Total: -82.71 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.05 Total: -32.08 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.78 Total: -3.47 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -79.16 5.83 -73.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619430375.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.192 kcal (2) G-P(sol) polarization free energy of solvation -79.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds