Wall clock time and date at job start Mon Mar 30 2020 01:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46840 * 2 1 4 4 C 1.50697 * 109.47286 * 240.00214 * 2 1 3 5 5 H 1.08001 * 119.99735 * 245.45234 * 4 2 1 6 6 C 1.37878 * 120.00030 * 65.45235 * 4 2 1 7 7 N 1.31509 * 120.00253 * 9.61799 * 6 4 2 8 8 Si 1.86801 * 119.99620 * 189.61817 * 6 4 2 9 9 H 1.48499 * 109.47166 * 84.99680 * 8 6 4 10 10 H 1.48503 * 109.46849 * 204.99368 * 8 6 4 11 11 H 1.48496 * 109.47497 * 324.99402 * 8 6 4 12 12 N 1.46503 * 109.46982 * 119.99712 * 2 1 3 13 13 C 1.46491 * 119.99962 * 60.00703 * 12 2 1 14 14 C 1.34779 * 119.99939 * 239.99975 * 12 2 1 15 15 O 1.21289 * 119.99904 * 0.02562 * 14 12 2 16 16 C 1.50701 * 119.99810 * 179.97438 * 14 12 2 17 17 H 1.08991 * 113.23164 * 312.47466 * 16 14 12 18 18 C 1.52888 * 113.98545 * 179.97438 * 16 14 12 19 19 C 1.50764 * 89.83025 * 246.08649 * 18 16 14 20 20 C 1.38250 * 149.30482 * 179.97438 * 19 18 16 21 21 C 1.38131 * 120.16143 * 179.97438 * 20 19 18 22 22 C 1.38467 * 119.72415 * 0.02562 * 21 20 19 23 23 F 1.35097 * 119.94003 * 180.02562 * 22 21 20 24 24 C 1.38195 * 120.11885 * 359.97438 * 22 21 20 25 25 C 1.38371 * 90.24711 * 359.97223 * 19 18 16 26 26 H 1.09000 * 109.46973 * 183.29031 * 1 2 3 27 27 H 1.09003 * 109.47570 * 303.28668 * 1 2 3 28 28 H 1.08998 * 109.47301 * 63.28843 * 1 2 3 29 29 H 0.96989 * 120.00188 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47169 * 269.99533 * 13 12 2 31 31 H 1.09001 * 109.47662 * 29.99429 * 13 12 2 32 32 H 1.09006 * 109.47484 * 149.99612 * 13 12 2 33 33 H 1.09001 * 113.16119 * 130.83619 * 18 16 14 34 34 H 1.09001 * 113.16827 * 1.34662 * 18 16 14 35 35 H 1.08007 * 119.92111 * 359.97438 * 20 19 18 36 36 H 1.07998 * 120.13878 * 179.97438 * 21 20 19 37 37 H 1.08005 * 119.84788 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5787 -1.6369 -1.1338 6 6 1.7945 -0.1773 -2.4796 7 7 1.3001 1.0360 -2.5936 8 14 2.1744 -1.1787 -4.0100 9 1 1.0216 -2.0608 -4.3233 10 1 2.4214 -0.2625 -5.1523 11 1 3.3823 -2.0089 -3.7713 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0931 1.4280 14 6 2.7931 -0.0355 2.0834 15 8 3.0858 1.1258 1.8916 16 6 3.2950 -0.7457 3.3142 17 1 2.5160 -1.2983 3.8393 18 6 4.1612 0.1251 4.2245 19 6 5.3524 -0.7464 3.9174 20 6 6.6932 -1.0327 4.0947 21 6 7.2636 -2.1127 3.4494 22 6 6.4868 -2.9075 2.6234 23 9 7.0400 -3.9652 1.9906 24 6 5.1465 -2.6214 2.4461 25 6 4.5697 -1.5361 3.0936 26 1 -0.3633 -1.0260 0.0590 27 1 -0.3634 0.5640 0.8591 28 1 -0.3634 0.4619 -0.9180 29 1 1.1331 1.4110 -3.4723 30 1 0.7376 -2.1444 1.9994 31 1 1.5296 -2.5968 0.4709 32 1 2.4630 -2.5818 1.9864 33 1 3.8588 0.0847 5.2710 34 1 4.2723 1.1469 3.8615 35 1 7.2963 -0.4104 4.7394 36 1 8.3111 -2.3358 3.5879 37 1 4.5445 -3.2445 1.8012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619434693.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:40 Heat of formation + Delta-G solvation = -15.691986 kcal Electronic energy + Delta-G solvation = -21431.980788 eV Core-core repulsion = 18090.221685 eV Total energy + Delta-G solvation = -3341.759102 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.87387 -40.89470 -38.52582 -35.59222 -34.76749 -32.81472 -30.88415 -29.67253 -27.44702 -26.16348 -25.26143 -24.96386 -22.62321 -21.33725 -20.22085 -18.38633 -17.39143 -16.87093 -16.51894 -16.19864 -15.60099 -15.38873 -15.10143 -14.74976 -14.34820 -13.99888 -13.66170 -13.40050 -12.89460 -12.54746 -12.43066 -12.26511 -11.93893 -11.75049 -11.68234 -11.46929 -11.10669 -11.00545 -10.90889 -10.74049 -10.59973 -10.30187 -10.20203 -9.37301 -9.24085 -8.82356 -8.44658 -8.38098 -7.65527 -6.10379 -4.15132 1.07584 1.18339 3.11184 3.26425 3.33516 3.35713 3.51272 3.86004 4.03739 4.20429 4.39354 4.51035 4.58688 4.90073 5.08017 5.21952 5.23050 5.33589 5.51206 5.61349 5.73518 5.75464 5.91102 5.97037 6.05934 6.11179 6.15839 6.31592 6.62724 6.65167 6.72916 6.85100 6.95890 7.30467 7.50930 7.66680 7.90305 8.14421 8.46954 8.81422 8.98811 9.49840 10.97098 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017614 B = 0.005681 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.294629 B = 4927.594973 C = 5865.928007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.255 3.745 3 H 0.070 0.930 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.586 5.586 13 C 0.080 3.920 14 C 0.521 3.479 15 O -0.543 6.543 16 C -0.070 4.070 17 H 0.121 0.879 18 C -0.054 4.054 19 C -0.129 4.129 20 C -0.067 4.067 21 C -0.149 4.149 22 C 0.096 3.904 23 F -0.140 7.140 24 C -0.124 4.124 25 C -0.084 4.084 26 H 0.032 0.968 27 H 0.016 0.984 28 H 0.076 0.924 29 H 0.264 0.736 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.636 -7.024 14.114 16.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.155 3.845 3 H 0.088 0.912 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.721 3.279 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.317 5.317 13 C -0.064 4.064 14 C 0.307 3.693 15 O -0.421 6.421 16 C -0.091 4.091 17 H 0.139 0.861 18 C -0.091 4.091 19 C -0.129 4.129 20 C -0.085 4.085 21 C -0.167 4.167 22 C 0.077 3.923 23 F -0.118 7.118 24 C -0.143 4.143 25 C -0.085 4.085 26 H 0.051 0.949 27 H 0.035 0.965 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.735 -6.324 13.796 16.224 hybrid contribution 0.267 -1.030 -1.190 1.597 sum 6.002 -7.354 12.606 15.780 Atomic orbital electron populations 1.22008 0.98463 0.98905 1.00471 1.18986 0.90478 0.95108 0.79904 0.91174 1.21251 1.36611 1.08616 0.90370 0.92237 1.24888 0.95091 0.94611 0.98941 1.69963 1.44315 1.13684 1.24132 0.86582 0.78722 0.80063 0.82510 1.20437 1.21153 1.19963 1.48174 1.48579 1.11540 1.23360 1.21667 0.98862 0.83392 1.02510 1.19669 0.79243 0.86804 0.83605 1.90658 1.58207 1.16961 1.76273 1.21529 0.95161 0.95813 0.96639 0.86099 1.21490 0.88281 0.99839 0.99533 1.21809 0.93930 0.98374 0.98768 1.19945 0.92753 0.96400 0.99382 1.20979 1.00392 0.96331 0.99026 1.17307 0.91583 0.87104 0.96352 1.91497 1.85542 1.54307 1.80500 1.20518 0.93406 0.98877 1.01470 1.21749 0.96137 0.94047 0.96566 0.94910 0.96479 0.90538 0.92633 0.93665 0.89972 0.92778 0.88849 0.87170 0.85188 0.84386 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.12 37.16 0.34 -2.90 16 2 C 0.26 6.46 2.50 -69.08 -0.17 6.28 16 3 H 0.07 2.08 6.84 -51.93 -0.36 1.73 16 4 C -0.53 -14.30 8.01 -34.44 -0.28 -14.58 16 5 H 0.06 1.58 7.16 -52.49 -0.38 1.21 16 6 C 0.07 1.86 5.17 -17.82 -0.09 1.77 16 7 N -0.88 -25.31 12.16 55.43 0.67 -24.64 16 8 Si 0.89 21.11 29.55 -169.99 -5.02 16.09 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.59 -12.30 2.75 -175.26 -0.48 -12.78 16 13 C 0.08 1.30 9.01 59.84 0.54 1.84 16 14 C 0.52 10.61 7.24 -10.98 -0.08 10.53 16 15 O -0.54 -13.20 15.05 5.55 0.08 -13.11 16 16 C -0.07 -1.04 3.07 -92.54 -0.28 -1.32 16 17 H 0.12 1.42 7.80 -51.93 -0.41 1.02 16 18 C -0.05 -0.71 7.54 -31.53 -0.24 -0.95 16 19 C -0.13 -1.74 7.59 -104.54 -0.79 -2.54 16 20 C -0.07 -0.78 10.03 -39.62 -0.40 -1.18 16 21 C -0.15 -1.77 10.04 -39.54 -0.40 -2.17 16 22 C 0.10 1.34 7.29 -39.51 -0.29 1.05 16 23 F -0.14 -2.00 17.26 2.25 0.04 -1.96 16 24 C -0.12 -1.83 9.72 -39.35 -0.38 -2.21 16 25 C -0.08 -1.26 6.23 -107.50 -0.67 -1.92 16 26 H 0.03 0.68 7.56 -51.93 -0.39 0.29 16 27 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 1.94 6.84 -51.93 -0.36 1.58 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.43 6.92 -51.93 -0.36 1.07 16 32 H 0.05 0.75 5.36 -51.93 -0.28 0.47 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.11 1.63 7.04 -51.93 -0.37 1.27 16 35 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 36 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 37 H 0.13 1.88 7.44 -52.48 -0.39 1.49 16 LS Contribution 312.46 15.07 4.71 4.71 Total: -1.00 -31.54 312.46 -7.72 -39.26 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.53 Total: 0.73 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -3.19 Total: -8.29 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.19 Total: -37.42 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.08 Total: -13.11 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.54 -7.72 -39.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619434693.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.565 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds