Wall clock time and date at job start Mon Mar 30 2020 01:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.46877 * 2 1 4 4 C 1.50703 * 109.47173 * 240.00164 * 2 1 3 5 5 H 1.07996 * 119.99571 * 245.45047 * 4 2 1 6 6 C 1.37870 * 120.00090 * 65.45375 * 4 2 1 7 7 N 1.31520 * 120.00328 * 9.61360 * 6 4 2 8 8 Si 1.86800 * 119.99919 * 189.61977 * 6 4 2 9 9 H 1.48507 * 109.47137 * 84.99375 * 8 6 4 10 10 H 1.48497 * 109.47391 * 204.98996 * 8 6 4 11 11 H 1.48495 * 109.47372 * 324.99673 * 8 6 4 12 12 N 1.46500 * 109.47545 * 119.99405 * 2 1 3 13 13 C 1.46501 * 119.99539 * 60.00512 * 12 2 1 14 14 C 1.34775 * 120.00418 * 239.99902 * 12 2 1 15 15 O 1.21279 * 119.99735 * 0.02562 * 14 12 2 16 16 C 1.50697 * 120.00163 * 179.97438 * 14 12 2 17 17 H 1.09000 * 113.12257 * 47.63309 * 16 14 12 18 18 C 1.52880 * 113.99104 * 180.02562 * 16 14 12 19 19 C 1.50760 * 89.76701 * 113.94881 * 18 16 14 20 20 C 1.38251 * 149.29934 * 180.02562 * 19 18 16 21 21 C 1.38143 * 120.15870 * 180.02562 * 20 19 18 22 22 C 1.38463 * 119.71914 * 359.97438 * 21 20 19 23 23 F 1.35104 * 119.93716 * 179.97438 * 22 21 20 24 24 C 1.38201 * 120.12575 * 0.27571 * 22 21 20 25 25 C 1.38370 * 90.24765 * 359.97438 * 19 18 16 26 26 H 1.08995 * 109.47529 * 63.28896 * 1 2 3 27 27 H 1.09000 * 109.47268 * 183.29271 * 1 2 3 28 28 H 1.09002 * 109.47138 * 303.28882 * 1 2 3 29 29 H 0.96998 * 120.00030 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.46914 * 269.99894 * 13 12 2 31 31 H 1.09005 * 109.47446 * 29.99547 * 13 12 2 32 32 H 1.08998 * 109.47347 * 149.99896 * 13 12 2 33 33 H 1.08999 * 113.16497 * 358.71841 * 18 16 14 34 34 H 1.09004 * 113.16114 * 229.17374 * 18 16 14 35 35 H 1.07998 * 119.92403 * 359.97438 * 20 19 18 36 36 H 1.07994 * 120.14105 * 179.97438 * 21 20 19 37 37 H 1.07998 * 119.84905 * 179.72447 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5786 -1.6369 -1.1338 6 6 1.7944 -0.1774 -2.4796 7 7 1.3000 1.0360 -2.5936 8 14 2.1743 -1.1788 -4.0101 9 1 1.0213 -2.0608 -4.3233 10 1 2.4212 -0.2627 -5.1524 11 1 3.3821 -2.0091 -3.7713 12 7 2.0184 -0.6905 1.1962 13 6 1.6645 -2.0931 1.4281 14 6 2.7933 -0.0354 2.0833 15 8 3.0858 1.1258 1.8915 16 6 3.2952 -0.7456 3.3140 17 1 3.7239 -1.7243 3.0986 18 6 4.1604 0.1256 4.2249 19 6 3.1007 0.0490 5.2945 20 6 2.6624 0.3910 6.5603 21 6 1.4358 -0.0542 7.0138 22 6 0.6466 -0.8440 6.1950 23 9 -0.5536 -1.2822 6.6343 24 6 1.0869 -1.1902 4.9316 25 6 2.3170 -0.7390 4.4701 26 1 -0.3634 0.4619 -0.9179 27 1 -0.3634 -1.0260 0.0590 28 1 -0.3633 0.5641 0.8591 29 1 1.1323 1.4107 -3.4724 30 1 0.7377 -2.1443 1.9994 31 1 1.5296 -2.5968 0.4709 32 1 2.4630 -2.5817 1.9864 33 1 4.3085 1.1342 3.8393 34 1 5.0962 -0.3532 4.5134 35 1 3.2807 1.0069 7.1964 36 1 1.0939 0.2128 8.0028 37 1 0.4697 -1.8102 4.2984 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619434694.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:42 Heat of formation + Delta-G solvation = -15.143885 kcal Electronic energy + Delta-G solvation = -21327.094249 eV Core-core repulsion = 17985.358914 eV Total energy + Delta-G solvation = -3341.735335 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.94095 -40.92378 -38.54846 -35.60339 -34.79544 -32.81937 -30.91890 -29.69821 -27.46647 -26.18098 -25.27809 -24.97001 -22.65513 -21.36705 -20.26875 -18.38745 -17.39751 -16.87905 -16.58930 -16.25159 -15.65048 -15.42995 -15.14707 -14.71613 -14.36269 -14.03422 -13.69040 -13.42466 -13.00648 -12.51101 -12.41191 -12.28164 -12.05736 -11.77476 -11.66846 -11.43287 -11.12358 -11.01115 -10.92148 -10.74652 -10.64003 -10.29765 -10.20981 -9.39901 -9.24748 -8.85880 -8.47202 -8.40158 -7.65808 -6.10937 -4.16120 1.02461 1.12531 3.11369 3.25696 3.32792 3.34172 3.45861 3.86340 3.99434 4.16368 4.38305 4.46857 4.56416 4.84471 5.08565 5.17364 5.21638 5.29702 5.46193 5.58884 5.70870 5.75343 5.86451 5.96366 6.03661 6.06751 6.14008 6.31271 6.58901 6.65636 6.73966 6.79991 6.96363 7.30568 7.50869 7.66121 7.89612 8.13596 8.46661 8.80767 8.98454 9.48921 10.96522 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028712 B = 0.004463 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.978145 B = 6272.035056 C = 6677.320129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.255 3.745 3 H 0.070 0.930 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.586 5.586 13 C 0.082 3.918 14 C 0.522 3.478 15 O -0.543 6.543 16 C -0.071 4.071 17 H 0.123 0.877 18 C -0.055 4.055 19 C -0.128 4.128 20 C -0.067 4.067 21 C -0.149 4.149 22 C 0.094 3.906 23 F -0.140 7.140 24 C -0.126 4.126 25 C -0.083 4.083 26 H 0.076 0.924 27 H 0.032 0.968 28 H 0.015 0.985 29 H 0.264 0.736 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.900 -5.680 16.395 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.155 3.845 3 H 0.088 0.912 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.316 5.316 13 C -0.062 4.062 14 C 0.307 3.693 15 O -0.421 6.421 16 C -0.093 4.093 17 H 0.141 0.859 18 C -0.092 4.092 19 C -0.128 4.128 20 C -0.085 4.085 21 C -0.168 4.168 22 C 0.075 3.925 23 F -0.119 7.119 24 C -0.145 4.145 25 C -0.084 4.084 26 H 0.095 0.905 27 H 0.051 0.949 28 H 0.034 0.966 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.112 0.888 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.907 -4.945 16.134 16.982 hybrid contribution -0.316 -0.834 -0.814 1.207 sum 1.591 -5.779 15.320 16.451 Atomic orbital electron populations 1.22007 0.98534 0.98891 1.00438 1.18986 0.90467 0.95119 0.79881 0.91170 1.21250 1.36709 1.08622 0.90344 0.92150 1.24900 0.95091 0.94604 0.98966 1.69975 1.44228 1.13713 1.24143 0.86564 0.78682 0.80012 0.82466 1.20484 1.21186 1.19953 1.48180 1.48485 1.11606 1.23327 1.21656 0.98864 0.83326 1.02393 1.19639 0.79553 0.86827 0.83288 1.90656 1.58366 1.16705 1.76395 1.21507 0.94410 1.01322 0.92012 0.85893 1.21506 0.95582 1.02595 0.89529 1.21841 0.98969 0.97900 0.94109 1.19965 0.95029 0.99301 0.94166 1.20983 0.95002 1.00224 1.00545 1.17312 0.82335 0.99160 0.93667 1.91498 1.42796 1.88047 1.89554 1.20496 0.96684 1.02566 0.94720 1.21745 0.93568 0.97207 0.95846 0.90533 0.94926 0.96569 0.92624 0.93943 0.89943 0.92686 0.87118 0.88771 0.85158 0.84378 0.84963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.12 37.15 0.34 -2.97 16 2 C 0.26 6.46 2.50 -69.08 -0.17 6.29 16 3 H 0.07 2.09 6.84 -51.93 -0.36 1.73 16 4 C -0.53 -14.12 8.01 -34.44 -0.28 -14.40 16 5 H 0.06 1.56 7.16 -52.49 -0.38 1.19 16 6 C 0.07 1.83 5.17 -17.82 -0.09 1.74 16 7 N -0.88 -25.17 12.17 55.43 0.67 -24.49 16 8 Si 0.90 20.74 29.55 -169.99 -5.02 15.72 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.59 -12.28 2.75 -175.26 -0.48 -12.76 16 13 C 0.08 1.33 9.19 59.85 0.55 1.88 16 14 C 0.52 10.60 7.23 -10.99 -0.08 10.52 16 15 O -0.54 -13.19 15.05 5.56 0.08 -13.11 16 16 C -0.07 -1.05 3.30 -92.63 -0.31 -1.36 16 17 H 0.12 1.49 6.90 -51.93 -0.36 1.13 16 18 C -0.06 -0.71 7.54 -31.54 -0.24 -0.95 16 19 C -0.13 -1.67 7.59 -104.54 -0.79 -2.46 16 20 C -0.07 -0.74 10.03 -39.61 -0.40 -1.14 16 21 C -0.15 -1.66 10.04 -39.53 -0.40 -2.05 16 22 C 0.09 1.22 7.29 -39.51 -0.29 0.94 16 23 F -0.14 -1.85 17.26 2.25 0.04 -1.81 16 24 C -0.13 -1.72 10.02 -39.34 -0.39 -2.12 16 25 C -0.08 -1.18 6.82 -107.59 -0.73 -1.91 16 26 H 0.08 1.96 6.84 -51.93 -0.36 1.61 16 27 H 0.03 0.69 7.56 -51.93 -0.39 0.30 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.04 0.63 7.91 -51.93 -0.41 0.21 16 31 H 0.08 1.42 6.92 -51.93 -0.36 1.06 16 32 H 0.05 0.72 6.19 -51.93 -0.32 0.40 16 33 H 0.11 1.64 7.04 -51.93 -0.37 1.27 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 36 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.13 1.69 7.83 -52.49 -0.41 1.28 16 LS Contribution 313.85 15.07 4.73 4.73 Total: -1.00 -31.16 313.85 -7.79 -38.95 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -4.53 Total: 0.76 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -3.28 Total: -7.99 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.19 Total: -37.25 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.08 Total: -13.11 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.16 -7.79 -38.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619434694.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.807 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds