Wall clock time and date at job start Mon Mar 30 2020 01:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.46877 * 2 1 4 4 C 1.50703 * 109.47173 * 240.00164 * 2 1 3 5 5 H 1.07996 * 119.99571 * 245.45047 * 4 2 1 6 6 C 1.37870 * 120.00090 * 65.45375 * 4 2 1 7 7 N 1.31520 * 120.00328 * 9.61360 * 6 4 2 8 8 Si 1.86800 * 119.99919 * 189.61977 * 6 4 2 9 9 H 1.48507 * 109.47137 * 84.99375 * 8 6 4 10 10 H 1.48497 * 109.47391 * 204.98996 * 8 6 4 11 11 H 1.48495 * 109.47372 * 324.99673 * 8 6 4 12 12 N 1.46500 * 109.47545 * 119.99405 * 2 1 3 13 13 C 1.46501 * 119.99539 * 60.00512 * 12 2 1 14 14 C 1.34775 * 120.00418 * 239.99902 * 12 2 1 15 15 O 1.21279 * 119.99735 * 0.02562 * 14 12 2 16 16 C 1.50697 * 120.00163 * 179.97438 * 14 12 2 17 17 H 1.09000 * 113.12257 * 47.63309 * 16 14 12 18 18 C 1.52880 * 113.99104 * 180.02562 * 16 14 12 19 19 C 1.50760 * 89.76701 * 113.94881 * 18 16 14 20 20 C 1.38251 * 149.29934 * 180.02562 * 19 18 16 21 21 C 1.38143 * 120.15870 * 180.02562 * 20 19 18 22 22 C 1.38463 * 119.71914 * 359.97438 * 21 20 19 23 23 F 1.35104 * 119.93716 * 179.97438 * 22 21 20 24 24 C 1.38201 * 120.12575 * 0.27571 * 22 21 20 25 25 C 1.38370 * 90.24765 * 359.97438 * 19 18 16 26 26 H 1.08995 * 109.47529 * 63.28896 * 1 2 3 27 27 H 1.09000 * 109.47268 * 183.29271 * 1 2 3 28 28 H 1.09002 * 109.47138 * 303.28882 * 1 2 3 29 29 H 0.96998 * 120.00030 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.46914 * 269.99894 * 13 12 2 31 31 H 1.09005 * 109.47446 * 29.99547 * 13 12 2 32 32 H 1.08998 * 109.47347 * 149.99896 * 13 12 2 33 33 H 1.08999 * 113.16497 * 358.71841 * 18 16 14 34 34 H 1.09004 * 113.16114 * 229.17374 * 18 16 14 35 35 H 1.07998 * 119.92403 * 359.97438 * 20 19 18 36 36 H 1.07994 * 120.14105 * 179.97438 * 21 20 19 37 37 H 1.07998 * 119.84905 * 179.72447 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5786 -1.6369 -1.1338 6 6 1.7944 -0.1774 -2.4796 7 7 1.3000 1.0360 -2.5936 8 14 2.1743 -1.1788 -4.0101 9 1 1.0213 -2.0608 -4.3233 10 1 2.4212 -0.2627 -5.1524 11 1 3.3821 -2.0091 -3.7713 12 7 2.0184 -0.6905 1.1962 13 6 1.6645 -2.0931 1.4281 14 6 2.7933 -0.0354 2.0833 15 8 3.0858 1.1258 1.8915 16 6 3.2952 -0.7456 3.3140 17 1 3.7239 -1.7243 3.0986 18 6 4.1604 0.1256 4.2249 19 6 3.1007 0.0490 5.2945 20 6 2.6624 0.3910 6.5603 21 6 1.4358 -0.0542 7.0138 22 6 0.6466 -0.8440 6.1950 23 9 -0.5536 -1.2822 6.6343 24 6 1.0869 -1.1902 4.9316 25 6 2.3170 -0.7390 4.4701 26 1 -0.3634 0.4619 -0.9179 27 1 -0.3634 -1.0260 0.0590 28 1 -0.3633 0.5641 0.8591 29 1 1.1323 1.4107 -3.4724 30 1 0.7377 -2.1443 1.9994 31 1 1.5296 -2.5968 0.4709 32 1 2.4630 -2.5817 1.9864 33 1 4.3085 1.1342 3.8393 34 1 5.0962 -0.3532 4.5134 35 1 3.2807 1.0069 7.1964 36 1 1.0939 0.2128 8.0028 37 1 0.4697 -1.8102 4.2984 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619434694.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:41 Heat of formation + Delta-G solvation = -32.617568 kcal Electronic energy + Delta-G solvation = -21327.851964 eV Core-core repulsion = 17985.358914 eV Total energy + Delta-G solvation = -3342.493051 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.92458 -42.07338 -40.01286 -37.25253 -35.97893 -34.74880 -31.96810 -31.48135 -28.54771 -27.61362 -27.28834 -26.21951 -23.82259 -22.72269 -21.57108 -19.84852 -18.70012 -18.24924 -18.15043 -17.55825 -17.15993 -16.60837 -16.32134 -16.09369 -15.98637 -15.13163 -14.99731 -14.59521 -14.48141 -14.06005 -13.77468 -13.72971 -13.52862 -13.24924 -12.90516 -12.87266 -12.71483 -12.63758 -12.55114 -12.29067 -12.13166 -12.08810 -11.61514 -11.25227 -10.83411 -10.51407 -9.93947 -9.48203 -9.37228 -8.17239 -6.30730 0.05632 0.17642 1.42705 1.43447 1.53060 1.65029 2.25434 2.45040 2.57298 2.91691 3.12293 3.17639 3.45824 3.53958 3.77981 3.96633 4.13616 4.34189 4.48079 4.52585 4.62536 4.68874 4.71579 4.82052 4.82854 4.95316 4.97153 5.01141 5.05685 5.09972 5.17908 5.43796 5.49839 5.62094 5.65362 5.86352 5.96184 6.11627 6.76377 6.79104 7.28923 7.44533 8.89999 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028712 B = 0.004463 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.978145 B = 6272.035056 C = 6677.320129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.259 3.741 3 H 0.014 0.986 4 C -0.540 4.540 5 H 0.066 0.934 6 C 0.016 3.984 7 N -0.920 5.920 8 Si 0.965 3.035 9 H -0.267 1.267 10 H -0.289 1.289 11 H -0.266 1.266 12 N -0.594 5.594 13 C 0.078 3.922 14 C 0.511 3.489 15 O -0.596 6.596 16 C -0.065 4.065 17 H 0.154 0.846 18 C -0.050 4.050 19 C -0.133 4.133 20 C -0.064 4.064 21 C -0.139 4.139 22 C 0.079 3.921 23 F -0.145 7.145 24 C -0.137 4.137 25 C -0.104 4.104 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.018 0.982 29 H 0.264 0.736 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.163 0.837 36 H 0.168 0.832 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.512 -7.679 18.109 19.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.157 3.843 3 H 0.032 0.968 4 C -0.578 4.578 5 H 0.085 0.915 6 C -0.184 4.184 7 N -0.559 5.559 8 Si 0.789 3.211 9 H -0.193 1.193 10 H -0.214 1.214 11 H -0.191 1.191 12 N -0.323 5.323 13 C -0.064 4.064 14 C 0.299 3.701 15 O -0.478 6.478 16 C -0.085 4.085 17 H 0.171 0.829 18 C -0.087 4.087 19 C -0.133 4.133 20 C -0.081 4.081 21 C -0.157 4.157 22 C 0.060 3.940 23 F -0.123 7.123 24 C -0.156 4.156 25 C -0.105 4.105 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.148 0.852 35 H 0.180 0.820 36 H 0.186 0.814 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.513 -6.993 17.875 19.358 hybrid contribution -0.523 -0.165 -1.262 1.376 sum 1.990 -7.158 16.614 18.199 Atomic orbital electron populations 1.21800 0.97489 0.99915 0.99202 1.18568 0.91228 0.92740 0.81814 0.96845 1.21547 1.36541 1.08682 0.91024 0.91540 1.25779 0.94970 0.95449 1.02235 1.70126 1.45550 1.15440 1.24775 0.85476 0.78965 0.78414 0.78217 1.19256 1.21446 1.19090 1.48185 1.48565 1.13366 1.22217 1.21897 1.01145 0.80622 1.02767 1.20624 0.78496 0.86476 0.84460 1.90623 1.60084 1.19252 1.77824 1.21452 0.95342 1.02306 0.89418 0.82861 1.21491 0.97005 1.01287 0.88936 1.22014 0.98676 0.97724 0.94879 1.20344 0.95205 0.98839 0.93749 1.21362 0.94389 0.98577 1.01396 1.17528 0.82585 0.99960 0.93935 1.91486 1.43100 1.88210 1.89544 1.20606 0.96681 1.02955 0.95315 1.21681 0.94235 0.98784 0.95781 0.93093 0.92737 0.96244 0.92694 0.92204 0.90773 0.89037 0.89535 0.85164 0.81959 0.81448 0.84743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.06 9.12 71.98 0.66 -5.40 16 2 C 0.26 13.53 2.50 44.24 0.11 13.64 16 3 H 0.01 0.86 6.84 -2.38 -0.02 0.84 16 4 C -0.54 -29.12 8.01 25.60 0.20 -28.91 16 5 H 0.07 3.42 7.16 -2.91 -0.02 3.40 16 6 C 0.02 0.85 5.17 84.65 0.44 1.29 16 7 N -0.92 -54.19 12.17 21.45 0.26 -53.93 16 8 Si 0.96 42.70 29.55 68.60 2.03 44.72 16 9 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 10 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 12 N -0.59 -25.03 2.75 -826.80 -2.28 -27.31 16 13 C 0.08 2.41 9.19 127.77 1.17 3.58 16 14 C 0.51 21.06 7.23 87.66 0.63 21.69 16 15 O -0.60 -30.41 15.05 -3.02 -0.05 -30.46 16 16 C -0.06 -1.81 3.30 -12.09 -0.04 -1.85 16 17 H 0.15 3.24 6.90 -2.39 -0.02 3.23 16 18 C -0.05 -1.22 7.54 27.48 0.21 -1.01 16 19 C -0.13 -3.16 7.59 -19.81 -0.15 -3.31 16 20 C -0.06 -1.21 10.03 22.25 0.22 -0.99 16 21 C -0.14 -2.65 10.04 22.30 0.22 -2.43 16 22 C 0.08 1.89 7.29 22.31 0.16 2.05 16 23 F -0.14 -3.58 17.26 44.97 0.78 -2.80 16 24 C -0.14 -3.52 10.02 22.42 0.22 -3.30 16 25 C -0.10 -2.78 6.82 -21.79 -0.15 -2.92 16 26 H 0.05 2.70 6.84 -2.39 -0.02 2.68 16 27 H 0.05 2.33 7.56 -2.39 -0.02 2.31 16 28 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 30 H 0.06 1.64 7.91 -2.39 -0.02 1.62 16 31 H 0.07 2.42 6.92 -2.38 -0.02 2.41 16 32 H 0.09 2.14 6.19 -2.39 -0.01 2.12 16 33 H 0.09 2.57 7.04 -2.39 -0.02 2.55 16 34 H 0.13 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 36 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.13 3.26 7.83 -2.91 -0.02 3.23 16 Total: -1.00 -71.25 313.85 5.75 -65.50 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 1.09 Total: 12.16 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 3.92 Total: -7.88 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -2.02 Total: -81.24 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.05 Total: -30.46 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.78 Total: -2.80 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -71.25 5.75 -65.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619434694.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.881 kcal (2) G-P(sol) polarization free energy of solvation -71.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds