Wall clock time and date at job start Mon Mar 30 2020 01:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46480 * 2 1 4 4 C 1.50695 * 109.46915 * 119.99712 * 2 1 3 5 5 H 1.08003 * 119.99518 * 114.37604 * 4 2 1 6 6 C 1.37878 * 120.00439 * 294.37065 * 4 2 1 7 7 N 1.31507 * 120.00312 * 157.15203 * 6 4 2 8 8 Si 1.86801 * 119.99463 * 337.15149 * 6 4 2 9 9 H 1.48510 * 109.46809 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47606 * 299.99845 * 8 6 4 11 11 H 1.48502 * 109.47343 * 60.00150 * 8 6 4 12 12 N 1.46501 * 109.47192 * 239.99963 * 2 1 3 13 13 C 1.46497 * 119.99845 * 299.99851 * 12 2 1 14 14 C 1.34781 * 119.99796 * 119.99654 * 12 2 1 15 15 O 1.21277 * 119.99763 * 0.02562 * 14 12 2 16 16 C 1.50695 * 119.99576 * 179.97438 * 14 12 2 17 17 H 1.09005 * 112.51315 * 309.68076 * 16 14 12 18 18 C 1.52883 * 113.16544 * 179.77359 * 16 14 12 19 19 C 1.51437 * 84.74061 * 244.77839 * 18 16 14 20 20 C 1.38964 * 145.49674 * 179.97438 * 19 18 16 21 21 C 1.37942 * 120.35202 * 179.97438 * 20 19 18 22 22 C 1.38463 * 120.15494 * 0.02562 * 21 20 19 23 23 F 1.35094 * 120.15230 * 179.97438 * 22 21 20 24 24 C 1.38394 * 119.69151 * 359.97438 * 22 21 20 25 25 C 1.38201 * 120.10602 * 0.02562 * 24 22 21 26 26 H 1.08994 * 109.47265 * 293.29041 * 1 2 3 27 27 H 1.09002 * 109.47128 * 53.29792 * 1 2 3 28 28 H 1.09001 * 109.47164 * 173.29069 * 1 2 3 29 29 H 0.96999 * 120.00037 * 354.92872 * 7 6 4 30 30 H 1.09005 * 109.47196 * 90.00309 * 13 12 2 31 31 H 1.09001 * 109.46912 * 209.99651 * 13 12 2 32 32 H 1.08993 * 109.47341 * 329.99860 * 13 12 2 33 33 H 1.09004 * 113.98613 * 358.72092 * 18 16 14 34 34 H 1.08996 * 113.98973 * 130.83397 * 18 16 14 35 35 H 1.07992 * 119.82528 * 359.96846 * 20 19 18 36 36 H 1.08000 * 119.92146 * 180.02562 * 21 20 19 37 37 H 1.08006 * 119.94815 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5762 -1.6384 1.1340 6 6 1.7976 -0.1755 2.4794 7 7 1.8129 -0.9519 3.5407 8 14 1.4577 1.6521 2.6639 9 1 1.2389 1.9726 4.0974 10 1 2.6187 2.4254 2.1550 11 1 0.2446 2.0110 1.8862 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0355 -2.0834 15 8 3.0864 1.1254 -1.8912 16 6 3.2960 -0.7461 -3.3135 17 1 3.7650 -1.7022 -3.0808 18 6 4.1544 0.1432 -4.2132 19 6 3.0388 -0.0383 -5.2211 20 6 2.5855 0.2759 -6.4966 21 6 1.3753 -0.2104 -6.9457 22 6 0.6023 -1.0160 -6.1267 23 9 -0.5832 -1.4918 -6.5664 24 6 1.0498 -1.3315 -4.8557 25 6 2.2624 -0.8438 -4.4068 26 1 -0.3633 0.4063 0.9439 27 1 -0.3633 0.6142 -0.8239 28 1 -0.3633 -1.0206 -0.1201 29 1 1.9161 -1.9110 3.4386 30 1 0.7376 -2.1444 -1.9993 31 1 2.4629 -2.5818 -1.9863 32 1 1.5296 -2.5968 -0.4708 33 1 4.2629 1.1659 -3.8517 34 1 5.0996 -0.3097 -4.5121 35 1 3.1838 0.9041 -7.1397 36 1 1.0299 0.0378 -7.9384 37 1 0.4500 -1.9592 -4.2133 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619434695.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:43 Heat of formation + Delta-G solvation = -32.256571 kcal Electronic energy + Delta-G solvation = -21444.022146 eV Core-core repulsion = 18101.544749 eV Total energy + Delta-G solvation = -3342.477397 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.94310 -42.16983 -40.07358 -37.38184 -36.00851 -34.85842 -32.29687 -31.74382 -28.53894 -27.74552 -26.90045 -26.24009 -23.85408 -22.60048 -21.53903 -19.91519 -19.56671 -18.54468 -18.23116 -17.61760 -17.10732 -16.59934 -16.34415 -16.17942 -15.60623 -15.30648 -15.00324 -14.81135 -14.56566 -14.18903 -14.03254 -13.71295 -13.56517 -13.42820 -13.22410 -13.09414 -12.75926 -12.65559 -12.45154 -12.37284 -11.99128 -11.73406 -11.58965 -11.25400 -10.89544 -10.47801 -9.98389 -9.57046 -9.47716 -8.73790 -6.39025 0.03891 0.15925 1.42411 1.48837 1.57545 1.68467 2.20291 2.41778 2.52495 2.80974 2.96027 3.23585 3.40377 3.51740 3.67787 3.95211 4.09111 4.29524 4.37762 4.45516 4.48849 4.54633 4.62397 4.66819 4.74307 4.80976 4.89733 4.94864 5.04490 5.07269 5.09868 5.18747 5.32489 5.58318 5.65115 5.79645 5.84518 6.03177 6.54154 6.65225 7.19923 7.35013 8.57877 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.026313 B = 0.004841 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.871414 B = 5782.962213 C = 6143.015516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.234 3.766 3 H 0.031 0.969 4 C -0.612 4.612 5 H 0.037 0.963 6 C 0.001 3.999 7 N -0.922 5.922 8 Si 1.064 2.936 9 H -0.280 1.280 10 H -0.280 1.280 11 H -0.250 1.250 12 N -0.592 5.592 13 C 0.083 3.917 14 C 0.511 3.489 15 O -0.590 6.590 16 C -0.061 4.061 17 H 0.142 0.858 18 C -0.051 4.051 19 C -0.129 4.129 20 C -0.070 4.070 21 C -0.140 4.140 22 C 0.082 3.918 23 F -0.143 7.143 24 C -0.127 4.127 25 C -0.109 4.109 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.259 0.741 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.135 0.865 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.596 -1.339 -22.044 22.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.131 3.869 3 H 0.049 0.951 4 C -0.650 4.650 5 H 0.055 0.945 6 C -0.200 4.200 7 N -0.556 5.556 8 Si 0.887 3.113 9 H -0.205 1.205 10 H -0.206 1.206 11 H -0.174 1.174 12 N -0.321 5.321 13 C -0.059 4.059 14 C 0.299 3.701 15 O -0.471 6.471 16 C -0.081 4.081 17 H 0.159 0.841 18 C -0.088 4.088 19 C -0.129 4.129 20 C -0.088 4.088 21 C -0.159 4.159 22 C 0.062 3.938 23 F -0.122 7.122 24 C -0.146 4.146 25 C -0.110 4.110 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.153 0.847 35 H 0.178 0.822 36 H 0.183 0.817 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.390 0.382 -20.819 20.826 hybrid contribution -0.078 -1.782 -0.441 1.838 sum 0.312 -1.400 -21.260 21.309 Atomic orbital electron populations 1.22265 0.96775 1.01182 1.00288 1.18929 0.91749 0.93397 0.82832 0.95096 1.22217 1.40337 1.10089 0.92380 0.94506 1.26684 0.92977 1.08500 0.91873 1.70957 1.46141 1.05972 1.32571 0.83782 0.78646 0.72253 0.76660 1.20540 1.20608 1.17411 1.47986 1.48983 1.13174 1.21935 1.21813 1.01249 0.80731 1.02106 1.20769 0.78235 0.86651 0.84443 1.90603 1.59868 1.18898 1.77751 1.21442 0.94745 1.01883 0.90056 0.84096 1.21776 0.96505 1.01234 0.89271 1.22595 0.97944 0.97544 0.94802 1.20684 0.95109 0.98752 0.94277 1.21289 0.94815 0.98357 1.01421 1.17499 0.83135 0.99372 0.93749 1.91488 1.44217 1.86936 1.89514 1.20214 0.96156 1.02978 0.95259 1.21008 0.94396 0.98964 0.96639 0.92851 0.93948 0.92412 0.93150 0.91628 0.89355 0.92008 0.88499 0.84709 0.82188 0.81733 0.84586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.32 9.02 71.98 0.65 -5.67 16 2 C 0.23 11.34 2.23 44.24 0.10 11.44 16 3 H 0.03 1.66 5.48 -2.39 -0.01 1.65 16 4 C -0.61 -33.92 8.30 25.60 0.21 -33.70 16 5 H 0.04 2.18 7.38 -2.91 -0.02 2.16 16 6 C 0.00 0.08 5.20 84.66 0.44 0.52 16 7 N -0.92 -55.94 13.70 21.45 0.29 -55.64 16 8 Si 1.06 51.20 26.43 68.60 1.81 53.02 16 9 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 10 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 11 H -0.25 -10.87 6.12 99.48 0.61 -10.27 16 12 N -0.59 -24.08 2.75 -826.81 -2.28 -26.36 16 13 C 0.08 2.66 8.95 127.77 1.14 3.80 16 14 C 0.51 19.83 7.18 87.65 0.63 20.46 16 15 O -0.59 -27.52 14.99 -3.02 -0.05 -27.57 16 16 C -0.06 -1.63 2.98 -14.64 -0.04 -1.67 16 17 H 0.14 3.04 7.01 -2.38 -0.02 3.03 16 18 C -0.05 -1.14 7.91 30.04 0.24 -0.91 16 19 C -0.13 -2.87 7.32 -21.76 -0.16 -3.03 16 20 C -0.07 -1.25 10.04 22.37 0.22 -1.02 16 21 C -0.14 -2.52 10.01 22.25 0.22 -2.29 16 22 C 0.08 1.83 7.31 22.36 0.16 2.00 16 23 F -0.14 -3.35 17.27 44.97 0.78 -2.57 16 24 C -0.13 -3.08 10.02 22.30 0.22 -2.86 16 25 C -0.11 -2.75 6.84 -19.82 -0.14 -2.89 16 26 H 0.05 2.37 5.44 -2.39 -0.01 2.36 16 27 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.06 2.31 7.45 -2.39 -0.02 2.29 16 29 H 0.26 15.73 8.73 -92.71 -0.81 14.92 16 30 H 0.07 1.80 7.54 -2.38 -0.02 1.78 16 31 H 0.09 2.21 6.24 -2.39 -0.01 2.20 16 32 H 0.06 2.24 6.92 -2.39 -0.02 2.22 16 33 H 0.10 2.60 7.02 -2.38 -0.02 2.58 16 34 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 36 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.14 3.08 7.46 -2.91 -0.02 3.06 16 Total: -1.00 -70.28 307.85 5.43 -64.85 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.96 Total: 10.09 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 3.91 Total: -15.82 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -1.98 Total: -82.00 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.05 Total: -27.57 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.78 Total: -2.57 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 1.81 Total: 53.02 kcal Total: -70.28 5.43 -64.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619434695.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.593 kcal (2) G-P(sol) polarization free energy of solvation -70.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds