Wall clock time and date at job start Mon Mar 30 2020 01:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47386 * 2 1 4 4 C 1.50703 * 109.46916 * 120.00581 * 2 1 3 5 5 H 1.08000 * 120.00023 * 120.00062 * 4 2 1 6 6 C 1.37875 * 119.99782 * 299.99087 * 4 2 1 7 7 N 1.31509 * 120.00255 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99772 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46968 * 60.00412 * 8 6 4 10 10 H 1.48504 * 109.47202 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47330 * 300.00478 * 8 6 4 12 12 N 1.46500 * 109.46793 * 240.00179 * 2 1 3 13 13 C 1.46497 * 120.00055 * 300.00224 * 12 2 1 14 14 C 1.34779 * 119.99952 * 119.99948 * 12 2 1 15 15 O 1.21279 * 119.99702 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00259 * 179.97438 * 14 12 2 17 17 H 1.09003 * 113.12367 * 47.63149 * 16 14 12 18 18 C 1.52876 * 113.98885 * 180.02562 * 16 14 12 19 19 C 1.50764 * 89.76516 * 114.10293 * 18 16 14 20 20 C 1.38263 * 149.30050 * 180.02562 * 19 18 16 21 21 C 1.38133 * 120.15538 * 180.02562 * 20 19 18 22 22 C 1.38461 * 119.72528 * 359.97438 * 21 20 19 23 23 F 1.35104 * 119.94057 * 179.97438 * 22 21 20 24 24 C 1.38204 * 120.12548 * 0.26975 * 22 21 20 25 25 C 1.38369 * 90.24690 * 0.02562 * 19 18 16 26 26 H 1.09006 * 109.46828 * 299.99954 * 1 2 3 27 27 H 1.09001 * 109.46942 * 59.99672 * 1 2 3 28 28 H 1.09000 * 109.47392 * 179.97438 * 1 2 3 29 29 H 0.96998 * 120.00574 * 179.97438 * 7 6 4 30 30 H 1.09008 * 109.47065 * 269.99918 * 13 12 2 31 31 H 1.08993 * 109.47435 * 29.99916 * 13 12 2 32 32 H 1.09007 * 109.46991 * 150.00491 * 13 12 2 33 33 H 1.08999 * 113.16772 * 358.87567 * 18 16 14 34 34 H 1.09000 * 113.16669 * 229.32231 * 18 16 14 35 35 H 1.07998 * 119.92069 * 0.02562 * 20 19 18 36 36 H 1.08002 * 120.14026 * 179.97438 * 21 20 19 37 37 H 1.07998 * 119.85175 * 179.72929 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9430 0.8296 2.6034 8 14 2.3225 -1.1198 4.0078 9 1 3.8075 -1.1193 4.0076 10 1 1.8271 -0.4202 5.2205 11 1 1.8280 -2.5201 4.0080 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0931 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.0865 1.1254 -1.8912 16 6 3.2959 -0.7460 -3.3136 17 1 2.5156 -1.2973 -3.8385 18 6 4.1619 0.1248 -4.2240 19 6 5.3514 -0.7498 -3.9188 20 6 6.6916 -1.0389 -4.0976 21 6 7.2599 -2.1209 -3.4539 22 6 6.4821 -2.9148 -2.6282 23 9 7.0334 -3.9744 -1.9969 24 6 5.1413 -2.6289 -2.4533 25 6 4.5676 -1.5385 -3.0952 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7084 1.1608 3.4844 30 1 2.4156 -2.7377 -0.9718 31 1 0.6904 -2.3001 -0.9848 32 1 1.6237 -2.2851 -2.5004 33 1 4.2755 1.1457 -3.8595 34 1 3.8583 0.0859 -5.2702 35 1 7.2954 -0.4173 -4.7420 36 1 8.3067 -2.3467 -3.5941 37 1 4.5376 -3.2537 -1.8117 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619434696.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:45 Heat of formation + Delta-G solvation = -13.171970 kcal Electronic energy + Delta-G solvation = -21431.508593 eV Core-core repulsion = 18089.858767 eV Total energy + Delta-G solvation = -3341.649826 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.87367 -40.89333 -38.54337 -35.60210 -34.77944 -32.85179 -30.86479 -29.58993 -27.42984 -26.19857 -25.27767 -24.95342 -22.62077 -21.32144 -20.20296 -18.37880 -17.35411 -16.92869 -16.52020 -16.23363 -15.59527 -15.36750 -15.10298 -14.75800 -14.39588 -13.98046 -13.64805 -13.40753 -12.90753 -12.63928 -12.47186 -12.25589 -11.98096 -11.77351 -11.52437 -11.38925 -11.10835 -11.04577 -10.83187 -10.70869 -10.58792 -10.28234 -10.17567 -9.39333 -9.18721 -8.82784 -8.46948 -8.38126 -7.64548 -6.08332 -4.16321 1.07476 1.18286 3.11386 3.27864 3.32770 3.35406 3.51148 3.85437 4.04269 4.19972 4.39272 4.51171 4.57844 4.90430 5.08176 5.16923 5.23352 5.30958 5.52301 5.63583 5.70780 5.75099 5.90026 6.02004 6.07199 6.10315 6.15685 6.27520 6.62930 6.73389 6.78899 6.85274 7.02353 7.38046 7.48226 7.69525 7.98924 8.17056 8.47220 8.79783 8.97877 9.50162 10.96955 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017661 B = 0.005684 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.073966 B = 4925.313994 C = 5890.923638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.586 5.586 13 C 0.085 3.915 14 C 0.521 3.479 15 O -0.545 6.545 16 C -0.072 4.072 17 H 0.122 0.878 18 C -0.054 4.054 19 C -0.129 4.129 20 C -0.067 4.067 21 C -0.149 4.149 22 C 0.095 3.905 23 F -0.140 7.140 24 C -0.123 4.123 25 C -0.083 4.083 26 H 0.094 0.906 27 H 0.012 0.988 28 H 0.030 0.970 29 H 0.264 0.736 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.140 -6.593 -14.131 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.316 5.316 13 C -0.059 4.059 14 C 0.306 3.694 15 O -0.423 6.423 16 C -0.093 4.093 17 H 0.140 0.860 18 C -0.091 4.091 19 C -0.130 4.130 20 C -0.085 4.085 21 C -0.168 4.168 22 C 0.076 3.924 23 F -0.119 7.119 24 C -0.142 4.142 25 C -0.083 4.083 26 H 0.113 0.887 27 H 0.031 0.969 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.128 0.872 34 H 0.112 0.888 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.206 -5.915 -13.807 16.252 hybrid contribution 0.430 -1.002 1.174 1.602 sum 6.635 -6.916 -12.633 15.858 Atomic orbital electron populations 1.22100 0.98105 0.99408 1.00937 1.18979 0.90923 0.94512 0.79836 0.91830 1.21263 1.31894 1.13014 0.90269 0.92381 1.24877 0.94922 0.94966 0.98935 1.69858 1.36282 1.22573 1.23893 0.86566 0.79303 0.79597 0.82007 1.20240 1.21111 1.20214 1.48203 1.48434 1.11627 1.23350 1.21604 1.01687 0.83180 0.99383 1.19651 0.79210 0.86782 0.83710 1.90649 1.58299 1.16991 1.76382 1.21496 0.95231 0.95831 0.96719 0.86023 1.21491 0.88309 0.99804 0.99528 1.21818 0.93938 0.98431 0.98775 1.19945 0.92767 0.96385 0.99394 1.20977 1.00399 0.96350 0.99030 1.17314 0.91606 0.87053 0.96406 1.91499 1.85624 1.54169 1.80569 1.20516 0.93381 0.98814 1.01497 1.21697 0.96100 0.93980 0.96547 0.88725 0.96899 0.95060 0.92605 0.93331 0.90663 0.92866 0.87183 0.88850 0.85201 0.84397 0.84874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.95 37.16 0.33 -3.13 16 2 C 0.26 6.54 2.64 -69.08 -0.18 6.35 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -14.26 8.37 -34.44 -0.29 -14.55 16 5 H 0.06 1.56 7.65 -52.49 -0.40 1.16 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -25.11 11.32 55.43 0.63 -24.48 16 8 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.59 -12.31 2.75 -175.26 -0.48 -12.80 16 13 C 0.09 1.41 9.51 59.85 0.57 1.98 16 14 C 0.52 10.56 7.24 -10.98 -0.08 10.48 16 15 O -0.54 -13.15 15.05 5.56 0.08 -13.07 16 16 C -0.07 -1.06 3.29 -92.63 -0.30 -1.36 16 17 H 0.12 1.42 6.90 -51.93 -0.36 1.06 16 18 C -0.05 -0.70 7.54 -31.54 -0.24 -0.94 16 19 C -0.13 -1.75 7.59 -104.53 -0.79 -2.54 16 20 C -0.07 -0.78 10.03 -39.61 -0.40 -1.18 16 21 C -0.15 -1.77 10.04 -39.54 -0.40 -2.17 16 22 C 0.10 1.33 7.29 -39.51 -0.29 1.04 16 23 F -0.14 -2.00 17.26 2.25 0.04 -1.96 16 24 C -0.12 -1.82 10.02 -39.34 -0.39 -2.21 16 25 C -0.08 -1.23 6.83 -107.59 -0.74 -1.96 16 26 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.05 0.79 7.92 -51.92 -0.41 0.38 16 31 H 0.07 1.25 6.43 -51.93 -0.33 0.91 16 32 H 0.05 0.68 6.19 -51.93 -0.32 0.36 16 33 H 0.11 1.62 7.04 -51.93 -0.37 1.25 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.13 1.88 7.83 -52.49 -0.41 1.47 16 LS Contribution 312.18 15.07 4.70 4.70 Total: -1.00 -31.32 312.18 -7.79 -39.10 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -4.45 Total: 0.75 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -3.29 Total: -8.49 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.14 Total: -37.28 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.08 Total: -13.07 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.32 -7.79 -39.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619434696.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.931 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds