Wall clock time and date at job start Mon Mar 30 2020 01:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47386 * 2 1 4 4 C 1.50703 * 109.46916 * 120.00581 * 2 1 3 5 5 H 1.08000 * 120.00023 * 120.00062 * 4 2 1 6 6 C 1.37875 * 119.99782 * 299.99087 * 4 2 1 7 7 N 1.31509 * 120.00255 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99772 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46968 * 60.00412 * 8 6 4 10 10 H 1.48504 * 109.47202 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47330 * 300.00478 * 8 6 4 12 12 N 1.46500 * 109.46793 * 240.00179 * 2 1 3 13 13 C 1.46497 * 120.00055 * 300.00224 * 12 2 1 14 14 C 1.34779 * 119.99952 * 119.99948 * 12 2 1 15 15 O 1.21279 * 119.99702 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00259 * 179.97438 * 14 12 2 17 17 H 1.09003 * 113.12367 * 47.63149 * 16 14 12 18 18 C 1.52876 * 113.98885 * 180.02562 * 16 14 12 19 19 C 1.50764 * 89.76516 * 114.10293 * 18 16 14 20 20 C 1.38263 * 149.30050 * 180.02562 * 19 18 16 21 21 C 1.38133 * 120.15538 * 180.02562 * 20 19 18 22 22 C 1.38461 * 119.72528 * 359.97438 * 21 20 19 23 23 F 1.35104 * 119.94057 * 179.97438 * 22 21 20 24 24 C 1.38204 * 120.12548 * 0.26975 * 22 21 20 25 25 C 1.38369 * 90.24690 * 0.02562 * 19 18 16 26 26 H 1.09006 * 109.46828 * 299.99954 * 1 2 3 27 27 H 1.09001 * 109.46942 * 59.99672 * 1 2 3 28 28 H 1.09000 * 109.47392 * 179.97438 * 1 2 3 29 29 H 0.96998 * 120.00574 * 179.97438 * 7 6 4 30 30 H 1.09008 * 109.47065 * 269.99918 * 13 12 2 31 31 H 1.08993 * 109.47435 * 29.99916 * 13 12 2 32 32 H 1.09007 * 109.46991 * 150.00491 * 13 12 2 33 33 H 1.08999 * 113.16772 * 358.87567 * 18 16 14 34 34 H 1.09000 * 113.16669 * 229.32231 * 18 16 14 35 35 H 1.07998 * 119.92069 * 0.02562 * 20 19 18 36 36 H 1.08002 * 120.14026 * 179.97438 * 21 20 19 37 37 H 1.07998 * 119.85175 * 179.72929 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9430 0.8296 2.6034 8 14 2.3225 -1.1198 4.0078 9 1 3.8075 -1.1193 4.0076 10 1 1.8271 -0.4202 5.2205 11 1 1.8280 -2.5201 4.0080 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0931 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.0865 1.1254 -1.8912 16 6 3.2959 -0.7460 -3.3136 17 1 2.5156 -1.2973 -3.8385 18 6 4.1619 0.1248 -4.2240 19 6 5.3514 -0.7498 -3.9188 20 6 6.6916 -1.0389 -4.0976 21 6 7.2599 -2.1209 -3.4539 22 6 6.4821 -2.9148 -2.6282 23 9 7.0334 -3.9744 -1.9969 24 6 5.1413 -2.6289 -2.4533 25 6 4.5676 -1.5385 -3.0952 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7084 1.1608 3.4844 30 1 2.4156 -2.7377 -0.9718 31 1 0.6904 -2.3001 -0.9848 32 1 1.6237 -2.2851 -2.5004 33 1 4.2755 1.1457 -3.8595 34 1 3.8583 0.0859 -5.2702 35 1 7.2954 -0.4173 -4.7420 36 1 8.3067 -2.3467 -3.5941 37 1 4.5376 -3.2537 -1.8117 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619434696.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:45 Heat of formation + Delta-G solvation = -30.729682 kcal Electronic energy + Delta-G solvation = -21432.269952 eV Core-core repulsion = 18089.858767 eV Total energy + Delta-G solvation = -3342.411186 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.93926 -42.07056 -40.02190 -37.27011 -35.98381 -34.79903 -31.95167 -31.39651 -28.54908 -27.65689 -27.30130 -26.20276 -23.82540 -22.69935 -21.54510 -19.86486 -18.66313 -18.43251 -18.03376 -17.57006 -17.18186 -16.62892 -16.31021 -16.11545 -16.05009 -15.20550 -14.94743 -14.61052 -14.45617 -14.14468 -13.86405 -13.61473 -13.41694 -13.27208 -12.96849 -12.81210 -12.73045 -12.66719 -12.51423 -12.20857 -12.15451 -12.11048 -11.62470 -11.21114 -10.86147 -10.54270 -9.94317 -9.48257 -9.37371 -8.17183 -6.33493 0.05103 0.17077 1.37932 1.40091 1.47340 1.64058 2.24371 2.42079 2.56664 2.92649 3.10449 3.17768 3.45857 3.53680 3.76509 3.95742 4.12889 4.33886 4.45961 4.52128 4.63586 4.66828 4.76612 4.83307 4.88666 4.95222 5.00285 5.02828 5.08411 5.10222 5.17296 5.44066 5.57835 5.63543 5.64287 5.86227 6.01349 6.14236 6.73517 6.77908 7.27038 7.43151 8.86770 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017661 B = 0.005684 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.073966 B = 4925.313994 C = 5890.923638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.261 3.739 3 H 0.010 0.990 4 C -0.539 4.539 5 H 0.055 0.945 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.960 3.040 9 H -0.281 1.281 10 H -0.280 1.280 11 H -0.263 1.263 12 N -0.594 5.594 13 C 0.082 3.918 14 C 0.511 3.489 15 O -0.595 6.595 16 C -0.064 4.064 17 H 0.159 0.841 18 C -0.047 4.047 19 C -0.133 4.133 20 C -0.063 4.063 21 C -0.139 4.139 22 C 0.077 3.923 23 F -0.146 7.146 24 C -0.139 4.139 25 C -0.107 4.107 26 H 0.067 0.933 27 H 0.024 0.976 28 H 0.048 0.952 29 H 0.265 0.735 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.134 0.866 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.076 -8.177 -15.796 19.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.159 3.841 3 H 0.028 0.972 4 C -0.578 4.578 5 H 0.073 0.927 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.785 3.215 9 H -0.207 1.207 10 H -0.205 1.205 11 H -0.187 1.187 12 N -0.323 5.323 13 C -0.060 4.060 14 C 0.299 3.701 15 O -0.477 6.477 16 C -0.085 4.085 17 H 0.176 0.824 18 C -0.084 4.084 19 C -0.133 4.133 20 C -0.081 4.081 21 C -0.158 4.158 22 C 0.058 3.942 23 F -0.125 7.125 24 C -0.158 4.158 25 C -0.108 4.108 26 H 0.086 0.914 27 H 0.043 0.957 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.152 0.848 35 H 0.182 0.818 36 H 0.185 0.815 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.133 -7.540 -15.494 18.650 hybrid contribution 0.196 -0.487 1.665 1.746 sum 7.329 -8.026 -13.829 17.589 Atomic orbital electron populations 1.21874 0.96797 1.00229 1.00180 1.18562 0.91867 0.92164 0.81541 0.97206 1.21514 1.31952 1.12997 0.91330 0.92659 1.25678 0.95083 0.95638 1.01830 1.69995 1.37125 1.23718 1.24511 0.85590 0.78272 0.79136 0.78516 1.20657 1.20547 1.18731 1.48197 1.48632 1.13277 1.22242 1.21838 1.01425 0.80379 1.02347 1.20631 0.78108 0.86419 0.84902 1.90617 1.59844 1.19449 1.77823 1.21484 0.96410 0.96235 0.94335 0.82415 1.21489 0.87686 0.97980 1.01232 1.22072 0.94762 0.97979 0.98494 1.20352 0.92327 0.96309 0.99128 1.21362 1.01606 0.95399 0.97407 1.17563 0.91752 0.87578 0.97345 1.91480 1.85621 1.54546 1.80847 1.20619 0.94033 0.99215 1.01920 1.21745 0.96402 0.94716 0.97904 0.91387 0.95680 0.93288 0.92555 0.93364 0.90748 0.88490 0.89425 0.84789 0.81776 0.81455 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.33 8.95 71.98 0.64 -5.69 16 2 C 0.26 13.67 2.64 44.25 0.12 13.78 16 3 H 0.01 0.62 6.90 -2.39 -0.02 0.61 16 4 C -0.54 -29.87 8.37 25.60 0.21 -29.66 16 5 H 0.06 3.01 7.65 -2.91 -0.02 2.99 16 6 C 0.02 0.98 5.30 84.66 0.45 1.43 16 7 N -0.91 -53.09 11.32 21.45 0.24 -52.85 16 8 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 9 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 12 N -0.59 -25.11 2.75 -826.79 -2.28 -27.39 16 13 C 0.08 2.60 9.51 127.77 1.21 3.81 16 14 C 0.51 20.88 7.24 87.66 0.63 21.52 16 15 O -0.60 -29.95 15.05 -3.03 -0.05 -29.99 16 16 C -0.06 -1.77 3.29 -12.10 -0.04 -1.81 16 17 H 0.16 3.11 6.90 -2.39 -0.02 3.09 16 18 C -0.05 -1.11 7.54 27.48 0.21 -0.91 16 19 C -0.13 -3.27 7.59 -19.81 -0.15 -3.42 16 20 C -0.06 -1.27 10.03 22.25 0.22 -1.05 16 21 C -0.14 -2.90 10.04 22.30 0.22 -2.68 16 22 C 0.08 2.02 7.29 22.31 0.16 2.19 16 23 F -0.15 -4.02 17.26 44.97 0.78 -3.25 16 24 C -0.14 -3.96 10.02 22.43 0.22 -3.74 16 25 C -0.11 -3.01 6.83 -21.78 -0.15 -3.15 16 26 H 0.07 3.63 6.07 -2.38 -0.01 3.62 16 27 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.05 2.11 6.66 -2.39 -0.02 2.10 16 29 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 30 H 0.05 1.52 7.92 -2.38 -0.02 1.50 16 31 H 0.07 2.35 6.43 -2.39 -0.02 2.33 16 32 H 0.10 2.18 6.19 -2.38 -0.01 2.16 16 33 H 0.09 2.53 7.04 -2.39 -0.02 2.51 16 34 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 37 H 0.13 3.62 7.83 -2.91 -0.02 3.60 16 Total: -1.00 -71.43 312.18 5.79 -65.64 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 1.09 Total: 11.29 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 3.98 Total: -9.38 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -2.03 Total: -80.24 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.05 Total: -29.99 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.78 Total: -3.25 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -71.43 5.79 -65.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619434696.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.910 kcal (2) G-P(sol) polarization free energy of solvation -71.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds