Wall clock time and date at job start Mon Mar 30 2020 01:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21270 * 119.99906 * 2 1 4 4 C 1.46996 * 120.00059 * 179.97438 * 2 1 3 5 5 C 1.39907 * 120.15962 * 359.97438 * 4 2 1 6 6 C 1.38425 * 119.77166 * 179.97438 * 5 4 2 7 7 N 1.39849 * 119.95095 * 179.97438 * 6 5 4 8 8 C 1.46506 * 120.00017 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47124 * 179.44434 * 8 7 6 10 10 C 1.50700 * 115.54732 * 294.86678 * 9 8 7 11 11 H 1.07997 * 119.99959 * 94.65677 * 10 9 8 12 12 C 1.37876 * 120.00051 * 274.64937 * 10 9 8 13 13 N 1.31514 * 119.99908 * 6.62431 * 12 10 9 14 14 Si 1.86797 * 120.00327 * 186.62023 * 12 10 9 15 15 H 1.48503 * 109.46902 * 60.00127 * 14 12 10 16 16 H 1.48491 * 109.47482 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47251 * 300.00791 * 14 12 10 18 18 C 1.52997 * 117.50053 * 80.53900 * 9 8 7 19 19 C 1.53002 * 117.49797 * 149.19797 * 9 8 7 20 20 C 1.39125 * 120.09470 * 0.25857 * 6 5 4 21 21 C 1.38137 * 120.32957 * 359.48641 * 20 6 5 22 22 C 1.38284 * 120.22826 * 0.51301 * 21 20 6 23 23 F 1.35099 * 120.05479 * 179.71878 * 22 21 20 24 24 H 1.08992 * 109.47321 * 270.00117 * 1 2 3 25 25 H 1.08996 * 109.47010 * 30.00383 * 1 2 3 26 26 H 1.09004 * 109.46700 * 150.00318 * 1 2 3 27 27 H 1.08002 * 120.11341 * 0.02562 * 5 4 2 28 28 H 0.97002 * 120.00471 * 0.02562 * 7 6 5 29 29 H 1.08993 * 109.47407 * 59.43675 * 8 7 6 30 30 H 1.09006 * 109.47015 * 299.44197 * 8 7 6 31 31 H 0.97003 * 120.00492 * 174.94187 * 13 12 10 32 32 H 1.09000 * 117.49925 * 215.00094 * 18 9 8 33 33 H 1.09006 * 117.49750 * 0.02562 * 18 9 8 34 34 H 1.09002 * 117.50230 * 359.97438 * 19 9 8 35 35 H 1.09001 * 117.49613 * 144.97061 * 19 9 8 36 36 H 1.08003 * 119.83053 * 179.74278 * 20 6 5 37 37 H 1.07999 * 119.88948 * 180.22824 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2420 -1.2730 0.0006 5 6 1.5459 -2.4866 0.0017 6 6 2.2461 -3.6807 0.0016 7 7 1.5540 -4.8959 0.0033 8 6 2.2941 -6.1603 0.0038 9 6 1.3068 -7.3291 0.0196 10 6 0.4620 -7.4494 1.2617 11 1 -0.5244 -7.0104 1.2885 12 6 0.9482 -8.1201 2.3639 13 7 2.1939 -8.5413 2.3806 14 14 -0.1624 -8.4304 3.8335 15 1 -1.3319 -9.2405 3.4077 16 1 0.5938 -9.1653 4.8790 17 1 -0.6323 -7.1328 4.3816 18 6 0.6683 -7.7325 -1.3109 19 6 1.7351 -8.6250 -0.6718 20 6 3.6373 -3.6735 0.0060 21 6 4.3288 -2.4777 -0.0003 22 6 3.6429 -1.2769 -0.0004 23 9 4.3227 -0.1094 -0.0008 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8901 -0.5138 27 1 0.4659 -2.4918 0.0017 28 1 0.5840 -4.9017 0.0040 29 1 2.9293 -6.2092 0.8882 30 1 2.9129 -6.2195 -0.8916 31 1 2.5579 -8.9476 3.1827 32 1 -0.3629 -8.0850 -1.2879 33 1 0.9519 -7.1656 -2.1977 34 1 2.7201 -8.6449 -1.1383 35 1 1.4061 -9.5647 -0.2280 36 1 4.1794 -4.6077 0.0102 37 1 5.4088 -2.4805 -0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000656652326.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:28 Heat of formation + Delta-G solvation = -35.134913 kcal Electronic energy + Delta-G solvation = -20775.981216 eV Core-core repulsion = 17433.379005 eV Total energy + Delta-G solvation = -3342.602211 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.46765 -39.71964 -38.48523 -36.93828 -34.11770 -32.08473 -32.03816 -29.37867 -28.83661 -25.87952 -25.13500 -23.65491 -21.92272 -21.22929 -19.65668 -19.31432 -17.49497 -16.91709 -16.45157 -15.92594 -15.49719 -15.15969 -14.76770 -14.61294 -14.53074 -14.24293 -13.99019 -13.85113 -13.31732 -12.79430 -12.59911 -12.37740 -12.24587 -12.14809 -11.77706 -11.64306 -11.24094 -11.07255 -11.00084 -10.63170 -10.37823 -9.71486 -9.65859 -9.61413 -9.02201 -8.95397 -8.60046 -8.33916 -6.93230 -6.19088 -4.27340 0.70595 1.56344 2.51285 3.20161 3.26461 3.28254 3.83881 3.90305 4.07746 4.27226 4.52855 4.82666 4.98933 5.09453 5.18580 5.25114 5.32471 5.38698 5.45313 5.70478 5.81041 5.86550 5.99418 6.18242 6.23307 6.26155 6.33036 6.39567 6.45260 6.56465 6.64208 6.94367 6.95945 7.26247 7.33497 7.52676 7.70863 7.80802 8.21553 8.27584 8.73242 9.40133 10.88767 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020530 B = 0.004288 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.501485 B = 6528.320161 C = 6850.565318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.394 3.606 3 O -0.454 6.454 4 C -0.159 4.159 5 C -0.141 4.141 6 C 0.215 3.785 7 N -0.715 5.715 8 C 0.162 3.838 9 C 0.029 3.971 10 C -0.500 4.500 11 H 0.059 0.941 12 C 0.075 3.925 13 N -0.877 5.877 14 Si 0.890 3.110 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.210 4.210 19 C -0.148 4.148 20 C -0.144 4.144 21 C -0.115 4.115 22 C 0.072 3.928 23 F -0.133 7.133 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.137 0.863 28 H 0.403 0.597 29 H 0.069 0.931 30 H 0.031 0.969 31 H 0.263 0.737 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.136 0.864 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.801 8.991 -5.082 10.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.272 3.728 3 O -0.330 6.330 4 C -0.162 4.162 5 C -0.165 4.165 6 C 0.106 3.894 7 N -0.338 5.338 8 C 0.039 3.961 9 C 0.028 3.972 10 C -0.538 4.538 11 H 0.077 0.923 12 C -0.129 4.129 13 N -0.512 5.512 14 Si 0.718 3.282 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.247 4.247 19 C -0.186 4.186 20 C -0.167 4.167 21 C -0.134 4.134 22 C 0.050 3.950 23 F -0.112 7.112 24 H 0.116 0.884 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.155 0.845 28 H 0.238 0.762 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.154 0.846 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.231 9.186 -4.981 10.452 hybrid contribution -0.738 -0.321 0.941 1.238 sum -0.969 8.865 -4.040 9.790 Atomic orbital electron populations 1.22214 0.93611 1.04836 1.04829 1.22381 0.91752 0.87355 0.71283 1.90568 1.72146 1.34146 1.36108 1.20213 0.92367 0.95347 1.08248 1.20699 0.99748 0.89382 1.06675 1.17893 0.91574 0.86776 0.93185 1.44979 1.08797 1.02161 1.77901 1.21074 0.94176 0.81969 0.98904 1.18970 0.96165 0.91381 0.90680 1.20283 1.01025 1.35654 0.96796 0.92288 1.24959 0.95038 0.94529 0.98362 1.69941 1.13269 1.39720 1.28314 0.86691 0.80817 0.78556 0.82155 1.20163 1.21227 1.20215 1.23024 0.97840 1.06491 0.97346 1.22501 0.96109 0.96590 1.03420 1.20796 0.92522 0.98234 1.05138 1.20833 1.00442 0.90513 1.01631 1.17548 0.88828 0.81589 1.07036 1.91496 1.79549 1.46178 1.93970 0.88423 0.89609 0.89291 0.84546 0.76151 0.91275 0.95042 0.92733 0.90358 0.91589 0.91701 0.89810 0.84606 0.84744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.85 9.75 36.01 0.35 -1.50 16 2 C 0.39 5.44 7.22 -30.76 -0.22 5.22 16 3 O -0.45 -7.79 16.08 5.57 0.09 -7.70 16 4 C -0.16 -2.31 5.87 -105.03 -0.62 -2.93 16 5 C -0.14 -1.91 9.20 -38.89 -0.36 -2.26 16 6 C 0.21 3.28 6.64 -83.80 -0.56 2.72 16 7 N -0.71 -11.93 5.65 -58.65 -0.33 -12.26 16 8 C 0.16 3.12 4.74 -4.04 -0.02 3.10 16 9 C 0.03 0.62 1.37 -155.66 -0.21 0.40 16 10 C -0.50 -12.11 8.66 -34.44 -0.30 -12.40 16 11 H 0.06 1.42 7.82 -52.49 -0.41 1.01 16 12 C 0.08 1.89 5.39 -17.82 -0.10 1.80 16 13 N -0.88 -22.91 12.92 55.43 0.72 -22.19 16 14 Si 0.89 19.78 29.55 -169.99 -5.02 14.76 16 15 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 16 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 C -0.21 -4.03 9.96 -26.70 -0.27 -4.29 16 19 C -0.15 -3.12 9.42 -26.69 -0.25 -3.37 16 20 C -0.14 -2.13 9.30 -39.29 -0.37 -2.50 16 21 C -0.11 -1.62 10.00 -39.60 -0.40 -2.02 16 22 C 0.07 1.13 7.29 -38.87 -0.28 0.84 16 23 F -0.13 -2.27 15.54 2.25 0.03 -2.24 16 24 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.09 0.68 6.47 -51.93 -0.34 0.35 16 27 H 0.14 1.48 6.36 -52.49 -0.33 1.15 16 28 H 0.40 6.53 8.40 -40.82 -0.34 6.19 16 29 H 0.07 1.50 7.91 -51.93 -0.41 1.09 16 30 H 0.03 0.57 7.93 -51.93 -0.41 0.16 16 31 H 0.26 6.68 8.32 -40.82 -0.34 6.34 16 32 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.08 1.92 8.14 -51.93 -0.42 1.49 16 36 H 0.14 1.97 6.71 -52.48 -0.35 1.61 16 37 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 322.70 15.07 4.86 4.86 Total: -1.00 -27.59 322.70 -7.93 -35.53 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -4.69 Total: 6.43 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -3.59 Total: -17.18 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.38 Total: -34.45 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.09 Total: -7.70 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.03 Total: -2.24 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.59 -7.93 -35.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000656652326.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.392 kcal (2) G-P(sol) polarization free energy of solvation -27.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds