Wall clock time and date at job start Mon Mar 30 2020 01:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46496 * 109.46798 * 2 1 4 4 C 1.46499 * 119.99934 * 269.99696 * 3 2 1 5 5 C 1.50704 * 109.47403 * 270.00160 * 4 3 2 6 6 H 1.08009 * 119.99395 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00196 * 179.97438 * 5 4 3 8 8 N 1.31508 * 119.99917 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99711 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47055 * 60.00192 * 9 7 5 11 11 H 1.48498 * 109.46955 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47272 * 300.00276 * 9 7 5 13 13 C 1.34782 * 120.00372 * 90.00087 * 3 2 1 14 14 O 1.21703 * 120.00223 * 179.97438 * 13 3 2 15 15 C 1.46338 * 119.99580 * 359.97438 * 13 3 2 16 16 C 1.34903 * 119.99608 * 180.28019 * 15 13 3 17 17 C 1.47080 * 119.99510 * 179.72380 * 16 15 13 18 18 C 1.39894 * 120.19327 * 359.72550 * 17 16 15 19 19 C 1.37809 * 119.84982 * 179.72089 * 18 17 16 20 20 C 1.38491 * 120.24272 * 0.55300 * 19 18 17 21 21 C 1.38266 * 120.38366 * 359.71909 * 20 19 18 22 22 C 1.38228 * 120.14579 * 0.02562 * 21 20 19 23 23 F 1.35096 * 120.12512 * 179.97438 * 22 21 20 24 24 H 1.08996 * 109.47083 * 299.99878 * 1 2 3 25 25 H 1.08997 * 109.46850 * 60.00091 * 1 2 3 26 26 H 1.09002 * 109.47048 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47083 * 240.00122 * 2 1 3 28 28 H 1.09005 * 109.46697 * 119.99622 * 2 1 3 29 29 H 1.09003 * 109.47441 * 29.99968 * 4 3 2 30 30 H 1.08998 * 109.47416 * 150.00325 * 4 3 2 31 31 H 0.97010 * 119.99509 * 180.02562 * 8 7 5 32 32 H 1.08002 * 119.99889 * 359.97438 * 15 13 3 33 33 H 1.07991 * 119.99920 * 359.71699 * 16 15 13 34 34 H 1.08001 * 120.07158 * 359.96872 * 18 17 16 35 35 H 1.08007 * 119.88084 * 180.24711 * 19 18 17 36 36 H 1.07995 * 119.80703 * 179.74342 * 20 19 18 37 37 H 1.07998 * 119.92870 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0957 7 6 4.1491 2.3896 -2.8780 8 7 3.3491 3.1256 -3.6181 9 14 5.9136 2.0967 -3.4167 10 1 6.1419 0.6400 -3.5934 11 1 6.1611 2.7966 -4.7028 12 1 6.8407 2.6211 -2.3820 13 6 2.2430 2.0167 1.1672 14 8 2.6490 3.1639 1.1672 15 6 1.9986 1.3270 2.4345 16 6 2.2180 1.9649 3.6028 17 6 1.9666 1.2737 4.8765 18 6 1.4945 -0.0431 4.8811 19 6 1.2668 -0.6860 6.0786 20 6 1.4928 -0.0292 7.2768 21 6 1.9540 1.2742 7.2837 22 6 2.1928 1.9324 6.0919 23 9 2.6429 3.2062 6.0992 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8901 29 1 1.5818 1.6876 -2.0285 30 1 2.0955 3.1410 -1.1385 31 1 3.6751 3.5155 -4.4444 32 1 1.6379 0.3090 2.4345 33 1 2.5784 2.9829 3.6027 34 1 1.3126 -0.5561 3.9483 35 1 0.9061 -1.7040 6.0828 36 1 1.3081 -0.5383 8.2112 37 1 2.1282 1.7792 8.2224 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706342804.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:08 Heat of formation + Delta-G solvation = -40.888229 kcal Electronic energy + Delta-G solvation = -20523.879364 eV Core-core repulsion = 17181.027671 eV Total energy + Delta-G solvation = -3342.851693 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.02228 -39.42766 -38.80866 -35.35380 -34.12343 -32.74813 -30.82469 -30.14448 -29.73311 -27.17498 -24.58053 -23.12956 -23.00140 -22.35389 -20.35161 -18.23560 -17.82942 -16.91369 -16.41764 -16.31078 -15.75693 -15.73766 -15.28396 -14.45246 -14.32666 -14.18181 -13.82318 -13.40412 -13.29328 -13.03902 -12.74079 -12.48028 -12.30386 -12.00714 -11.75948 -11.37342 -11.30846 -11.15799 -10.91042 -10.72854 -10.48829 -10.42732 -10.11818 -9.63709 -9.12108 -8.99058 -8.41531 -8.32594 -7.63028 -6.02443 -4.07268 0.40653 0.94675 2.02320 3.33384 3.37840 3.40514 3.42602 3.87689 4.01363 4.05058 4.44649 4.45544 4.55741 4.65700 4.90766 5.01254 5.15678 5.27299 5.32806 5.42260 5.62138 5.63502 5.71927 5.78118 5.84828 5.91854 6.02463 6.10858 6.23618 6.39601 6.48078 6.53770 6.62307 7.10956 7.46496 7.55982 7.93965 8.25153 8.42811 8.91296 9.09752 9.57682 11.05557 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023819 B = 0.003845 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.227630 B = 7280.380990 C = 7810.577847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.590 5.590 4 C 0.246 3.754 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.531 3.469 14 O -0.541 6.541 15 C -0.175 4.175 16 C -0.059 4.059 17 C -0.088 4.088 18 C -0.082 4.082 19 C -0.130 4.130 20 C -0.091 4.091 21 C -0.156 4.156 22 C 0.113 3.887 23 F -0.132 7.132 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.033 0.967 30 H 0.044 0.956 31 H 0.264 0.736 32 H 0.127 0.873 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.843 -10.316 19.304 22.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.320 5.320 4 C 0.127 3.873 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.320 3.680 14 O -0.421 6.421 15 C -0.196 4.196 16 C -0.079 4.079 17 C -0.089 4.089 18 C -0.100 4.100 19 C -0.148 4.148 20 C -0.109 4.109 21 C -0.174 4.174 22 C 0.093 3.907 23 F -0.110 7.110 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.145 0.855 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.621 -9.551 19.063 22.327 hybrid contribution 1.036 -0.011 -0.398 1.110 sum -5.586 -9.561 18.665 21.703 Atomic orbital electron populations 1.22244 0.96713 1.01393 1.02498 1.21459 0.93544 0.84229 1.02660 1.48172 1.62955 1.13184 1.07734 1.19286 0.96291 0.93710 0.78036 1.21408 0.96906 1.32029 1.06250 0.92489 1.24931 0.97865 0.94900 0.96381 1.69925 1.35745 1.33397 1.14340 0.86555 0.84801 0.78232 0.77812 1.20244 1.21166 1.20168 1.18100 0.79297 0.86518 0.84093 1.90791 1.46032 1.17838 1.87427 1.23355 1.02478 1.00539 0.93211 1.22133 0.95883 1.00103 0.89779 1.19149 1.02632 0.94973 0.92165 1.21367 0.96688 0.92814 0.99089 1.21152 1.01093 1.00538 0.92045 1.21102 0.97544 0.93621 0.98655 1.21093 1.03230 0.96167 0.96942 1.17900 0.99131 0.79781 0.93852 1.91521 1.86327 1.35861 1.97290 0.92943 0.91988 0.92172 0.89862 0.91675 0.94919 0.93814 0.92665 0.85509 0.84356 0.84486 0.85072 0.85009 0.84581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 2 C 0.11 1.68 5.84 -4.04 -0.02 1.66 16 3 N -0.59 -12.71 2.46 -176.73 -0.43 -13.14 16 4 C 0.25 6.52 5.16 -5.19 -0.03 6.50 16 5 C -0.53 -15.17 9.39 -34.44 -0.32 -15.49 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 9 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.53 11.54 7.60 -13.00 -0.10 11.44 16 14 O -0.54 -14.24 15.81 5.19 0.08 -14.16 16 15 C -0.18 -2.81 8.61 -37.51 -0.32 -3.14 16 16 C -0.06 -0.91 9.26 -37.18 -0.34 -1.26 16 17 C -0.09 -1.11 5.87 -105.00 -0.62 -1.73 16 18 C -0.08 -0.81 9.41 -39.12 -0.37 -1.17 16 19 C -0.13 -1.02 10.03 -39.65 -0.40 -1.42 16 20 C -0.09 -0.69 10.04 -39.48 -0.40 -1.08 16 21 C -0.16 -1.43 10.01 -39.57 -0.40 -1.83 16 22 C 0.11 1.37 7.30 -38.89 -0.28 1.08 16 23 F -0.13 -1.80 16.62 2.25 0.04 -1.76 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 28 H 0.06 0.85 6.09 -51.93 -0.32 0.54 16 29 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 30 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.13 1.58 4.22 -52.49 -0.22 1.36 16 33 H 0.14 2.40 7.20 -52.49 -0.38 2.02 16 34 H 0.14 1.14 6.17 -52.49 -0.32 0.81 16 35 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 36 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 37 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 325.20 15.07 4.90 4.90 Total: -1.00 -34.06 325.20 -7.56 -41.61 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -4.55 Total: -1.77 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -3.31 Total: -6.64 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.30 Total: -39.28 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.08 Total: -14.16 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.06 -7.56 -41.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706342804.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.726 kcal (2) G-P(sol) polarization free energy of solvation -34.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds