Wall clock time and date at job start Mon Mar 30 2020 01:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46496 * 109.46798 * 2 1 4 4 C 1.46499 * 119.99934 * 269.99696 * 3 2 1 5 5 C 1.50704 * 109.47403 * 270.00160 * 4 3 2 6 6 H 1.08009 * 119.99395 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00196 * 179.97438 * 5 4 3 8 8 N 1.31508 * 119.99917 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99711 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47055 * 60.00192 * 9 7 5 11 11 H 1.48498 * 109.46955 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47272 * 300.00276 * 9 7 5 13 13 C 1.34782 * 120.00372 * 90.00087 * 3 2 1 14 14 O 1.21703 * 120.00223 * 179.97438 * 13 3 2 15 15 C 1.46338 * 119.99580 * 359.97438 * 13 3 2 16 16 C 1.34903 * 119.99608 * 180.28019 * 15 13 3 17 17 C 1.47080 * 119.99510 * 179.72380 * 16 15 13 18 18 C 1.39894 * 120.19327 * 359.72550 * 17 16 15 19 19 C 1.37809 * 119.84982 * 179.72089 * 18 17 16 20 20 C 1.38491 * 120.24272 * 0.55300 * 19 18 17 21 21 C 1.38266 * 120.38366 * 359.71909 * 20 19 18 22 22 C 1.38228 * 120.14579 * 0.02562 * 21 20 19 23 23 F 1.35096 * 120.12512 * 179.97438 * 22 21 20 24 24 H 1.08996 * 109.47083 * 299.99878 * 1 2 3 25 25 H 1.08997 * 109.46850 * 60.00091 * 1 2 3 26 26 H 1.09002 * 109.47048 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47083 * 240.00122 * 2 1 3 28 28 H 1.09005 * 109.46697 * 119.99622 * 2 1 3 29 29 H 1.09003 * 109.47441 * 29.99968 * 4 3 2 30 30 H 1.08998 * 109.47416 * 150.00325 * 4 3 2 31 31 H 0.97010 * 119.99509 * 180.02562 * 8 7 5 32 32 H 1.08002 * 119.99889 * 359.97438 * 15 13 3 33 33 H 1.07991 * 119.99920 * 359.71699 * 16 15 13 34 34 H 1.08001 * 120.07158 * 359.96872 * 18 17 16 35 35 H 1.08007 * 119.88084 * 180.24711 * 19 18 17 36 36 H 1.07995 * 119.80703 * 179.74342 * 20 19 18 37 37 H 1.07998 * 119.92870 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0957 7 6 4.1491 2.3896 -2.8780 8 7 3.3491 3.1256 -3.6181 9 14 5.9136 2.0967 -3.4167 10 1 6.1419 0.6400 -3.5934 11 1 6.1611 2.7966 -4.7028 12 1 6.8407 2.6211 -2.3820 13 6 2.2430 2.0167 1.1672 14 8 2.6490 3.1639 1.1672 15 6 1.9986 1.3270 2.4345 16 6 2.2180 1.9649 3.6028 17 6 1.9666 1.2737 4.8765 18 6 1.4945 -0.0431 4.8811 19 6 1.2668 -0.6860 6.0786 20 6 1.4928 -0.0292 7.2768 21 6 1.9540 1.2742 7.2837 22 6 2.1928 1.9324 6.0919 23 9 2.6429 3.2062 6.0992 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8901 29 1 1.5818 1.6876 -2.0285 30 1 2.0955 3.1410 -1.1385 31 1 3.6751 3.5155 -4.4444 32 1 1.6379 0.3090 2.4345 33 1 2.5784 2.9829 3.6027 34 1 1.3126 -0.5561 3.9483 35 1 0.9061 -1.7040 6.0828 36 1 1.3081 -0.5383 8.2112 37 1 2.1282 1.7792 8.2224 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706342804.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:08 Heat of formation + Delta-G solvation = -61.590858 kcal Electronic energy + Delta-G solvation = -20524.777097 eV Core-core repulsion = 17181.027671 eV Total energy + Delta-G solvation = -3343.749427 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.98098 -40.84166 -39.84036 -37.04512 -35.32590 -34.79346 -31.67931 -31.53567 -30.82907 -29.02540 -26.01013 -24.62823 -24.15987 -23.37550 -21.61297 -19.54671 -18.98544 -18.59118 -18.04812 -17.51480 -16.94874 -16.69330 -16.60002 -16.21510 -15.86069 -15.19868 -14.97184 -14.60397 -14.54637 -14.33641 -14.12300 -13.60937 -13.50017 -13.40516 -13.27039 -13.08324 -12.67495 -12.54138 -12.37366 -12.17640 -12.02015 -11.88305 -11.76373 -11.44434 -10.74324 -10.65988 -9.85330 -9.55403 -9.20899 -8.23822 -6.39448 -0.56509 0.24144 0.93313 1.35015 1.40063 1.47389 2.24788 2.38393 2.43642 2.76623 3.05189 3.21347 3.45164 3.69324 3.92346 3.99413 4.13075 4.22853 4.35224 4.37920 4.42895 4.63548 4.84707 4.88487 4.93217 4.98820 5.03863 5.08733 5.15556 5.21765 5.34561 5.40311 5.44177 5.47692 5.55938 5.84414 5.91525 6.04230 6.67523 6.76107 7.25168 7.43093 8.83055 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023819 B = 0.003845 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.227630 B = 7280.380990 C = 7810.577847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.096 3.904 3 N -0.595 5.595 4 C 0.261 3.739 5 C -0.546 4.546 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.969 3.031 10 H -0.257 1.257 11 H -0.277 1.277 12 H -0.280 1.280 13 C 0.521 3.479 14 O -0.608 6.608 15 C -0.187 4.187 16 C -0.039 4.039 17 C -0.119 4.119 18 C -0.078 4.078 19 C -0.123 4.123 20 C -0.074 4.074 21 C -0.158 4.158 22 C 0.085 3.915 23 F -0.152 7.152 24 H 0.058 0.942 25 H 0.036 0.964 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.026 0.974 30 H -0.007 1.007 31 H 0.268 0.732 32 H 0.172 0.828 33 H 0.104 0.896 34 H 0.156 0.844 35 H 0.169 0.831 36 H 0.171 0.829 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.206 -14.280 21.724 26.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.025 4.025 3 N -0.324 5.324 4 C 0.140 3.860 5 C -0.585 4.585 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.793 3.207 10 H -0.181 1.181 11 H -0.201 1.201 12 H -0.205 1.205 13 C 0.312 3.688 14 O -0.492 6.492 15 C -0.207 4.207 16 C -0.059 4.059 17 C -0.120 4.120 18 C -0.095 4.095 19 C -0.140 4.140 20 C -0.092 4.092 21 C -0.177 4.177 22 C 0.066 3.934 23 F -0.131 7.131 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.120 0.880 27 H 0.093 0.907 28 H 0.122 0.878 29 H 0.044 0.956 30 H 0.012 0.988 31 H 0.077 0.923 32 H 0.189 0.811 33 H 0.122 0.878 34 H 0.174 0.826 35 H 0.187 0.813 36 H 0.188 0.812 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.014 -13.573 21.493 26.370 hybrid contribution 1.083 1.198 -0.961 1.880 sum -5.931 -12.375 20.532 24.696 Atomic orbital electron populations 1.22178 0.94336 1.03778 1.01654 1.21855 0.95484 0.81029 1.04181 1.48190 1.62945 1.15246 1.06019 1.18727 0.95494 0.91443 0.80346 1.21692 0.97844 1.32324 1.06624 0.92857 1.25889 1.02589 0.94359 0.96351 1.70051 1.37908 1.34076 1.14778 0.85446 0.78707 0.79203 0.77318 1.18130 1.20148 1.20545 1.19038 0.77906 0.86006 0.85828 1.90743 1.49194 1.20853 1.88456 1.23066 1.05538 1.02138 0.89923 1.22131 0.93438 0.98724 0.91616 1.19087 1.05881 0.96583 0.90472 1.21659 0.95453 0.91347 1.01089 1.21626 0.99407 1.01952 0.91034 1.21644 0.94578 0.92522 1.00407 1.21412 1.02777 0.97070 0.96418 1.18364 1.00463 0.79427 0.95171 1.91466 1.86840 1.37376 1.97437 0.92251 0.94443 0.88019 0.90651 0.87776 0.95622 0.98839 0.92330 0.81084 0.87802 0.82629 0.81315 0.81163 0.82770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 10.24 71.98 0.74 -3.24 16 2 C 0.10 2.96 5.84 86.38 0.50 3.47 16 3 N -0.59 -26.58 2.46 -831.26 -2.04 -28.62 16 4 C 0.26 14.75 5.16 85.63 0.44 15.19 16 5 C -0.55 -32.68 9.39 25.60 0.24 -32.44 16 6 H 0.05 3.15 7.81 -2.91 -0.02 3.12 16 7 C 0.01 0.42 5.46 84.66 0.46 0.88 16 8 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 9 Si 0.97 46.02 29.54 68.60 2.03 48.05 16 10 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 13 C 0.52 23.76 7.60 86.35 0.66 24.41 16 14 O -0.61 -34.73 15.81 -4.36 -0.07 -34.79 16 15 C -0.19 -5.97 8.61 23.61 0.20 -5.77 16 16 C -0.04 -1.24 9.26 23.82 0.22 -1.01 16 17 C -0.12 -2.87 5.87 -20.11 -0.12 -2.99 16 18 C -0.08 -1.24 9.41 22.57 0.21 -1.02 16 19 C -0.12 -1.24 10.03 22.23 0.22 -1.02 16 20 C -0.07 -0.73 10.04 22.34 0.22 -0.51 16 21 C -0.16 -2.46 10.01 22.27 0.22 -2.23 16 22 C 0.08 2.01 7.30 22.72 0.17 2.17 16 23 F -0.15 -4.39 16.62 44.97 0.75 -3.65 16 24 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 28 H 0.10 2.38 6.09 -2.38 -0.01 2.37 16 29 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 30 H -0.01 -0.43 7.42 -2.39 -0.02 -0.45 16 31 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 32 H 0.17 3.74 4.22 -2.91 -0.01 3.73 16 33 H 0.10 3.98 7.20 -2.91 -0.02 3.96 16 34 H 0.16 1.80 6.17 -2.91 -0.02 1.78 16 35 H 0.17 0.53 8.06 -2.91 -0.02 0.50 16 36 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 37 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -82.17 325.20 6.42 -75.75 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: 1.08 Total: 4.75 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 4.40 Total: -4.11 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -1.76 Total: -86.00 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -0.07 Total: -34.79 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.75 Total: -3.65 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -82.17 6.42 -75.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706342804.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.156 kcal (2) G-P(sol) polarization free energy of solvation -82.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds