Wall clock time and date at job start Mon Mar 30 2020 01:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47266 * 2 1 4 4 C 1.50703 * 109.46969 * 240.00112 * 2 1 3 5 5 H 1.08004 * 120.00196 * 239.99879 * 4 2 1 6 6 C 1.37881 * 119.99680 * 60.00284 * 4 2 1 7 7 N 1.31508 * 120.00058 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99773 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47313 * 179.97438 * 8 6 4 10 10 H 1.48500 * 109.47113 * 299.99580 * 8 6 4 11 11 H 1.48501 * 109.47190 * 59.99817 * 8 6 4 12 12 N 1.46503 * 109.47277 * 120.00288 * 2 1 3 13 13 C 1.46498 * 119.99822 * 60.00084 * 12 2 1 14 14 C 1.34772 * 120.00005 * 240.00056 * 12 2 1 15 15 O 1.21711 * 120.00094 * 359.97438 * 14 12 2 16 16 C 1.46339 * 120.00036 * 180.02562 * 14 12 2 17 17 C 1.34893 * 119.99726 * 186.58659 * 16 14 12 18 18 C 1.47088 * 120.00327 * 10.06078 * 17 16 14 19 19 C 1.39892 * 120.18699 * 48.57995 * 18 17 16 20 20 C 1.37810 * 119.84892 * 179.67504 * 19 18 17 21 21 C 1.38493 * 120.24139 * 0.62236 * 20 19 18 22 22 C 1.38273 * 120.38442 * 359.67397 * 21 20 19 23 23 C 1.38237 * 120.14086 * 0.02562 * 22 21 20 24 24 F 1.35094 * 120.11767 * 180.02562 * 23 22 21 25 25 H 1.09003 * 109.46898 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46808 * 299.99490 * 1 2 3 27 27 H 1.08998 * 109.47471 * 59.99962 * 1 2 3 28 28 H 0.97007 * 119.99888 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.47545 * 90.00093 * 13 12 2 30 30 H 1.09001 * 109.46878 * 210.00025 * 13 12 2 31 31 H 1.09001 * 109.47502 * 330.00118 * 13 12 2 32 32 H 1.08001 * 120.00083 * 6.57607 * 16 14 12 33 33 H 1.08006 * 119.99605 * 190.05844 * 17 16 14 34 34 H 1.07999 * 120.07853 * 359.97438 * 19 18 17 35 35 H 1.07996 * 119.88388 * 180.31760 * 20 19 18 36 36 H 1.08001 * 119.81044 * 179.69269 * 21 20 19 37 37 H 1.07994 * 119.92958 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3224 -1.1194 -4.0080 9 1 1.8268 -0.4197 -5.2205 10 1 3.8074 -1.1187 -4.0079 11 1 1.8279 -2.5196 -4.0083 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0876 1.1294 1.8905 16 6 3.2815 -0.7258 3.2778 17 6 3.9440 -0.0380 4.2305 18 6 3.9850 1.4315 4.1825 19 6 2.8076 2.1622 3.9908 20 6 2.8532 3.5391 3.9537 21 6 4.0618 4.2009 4.0925 22 6 5.2324 3.4883 4.2762 23 6 5.2042 2.1070 4.3222 24 9 6.3481 1.4112 4.5022 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.7081 1.1610 -3.4844 29 1 2.4158 -2.7378 0.9715 30 1 1.6238 -2.2853 2.5000 31 1 0.6905 -2.3003 0.9845 32 1 3.1113 -1.7857 3.3967 33 1 4.4442 -0.5664 5.0287 34 1 1.8643 1.6487 3.8771 35 1 1.9438 4.1039 3.8109 36 1 4.0901 5.2800 4.0573 37 1 6.1707 4.0120 4.3840 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706344630.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:35 Heat of formation + Delta-G solvation = -24.056156 kcal Electronic energy + Delta-G solvation = -21397.537492 eV Core-core repulsion = 18055.415692 eV Total energy + Delta-G solvation = -3342.121800 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.67603 -39.54231 -38.23045 -35.45960 -33.59679 -32.82593 -30.34592 -29.96368 -28.79576 -26.13559 -25.22387 -24.10419 -22.38242 -21.84116 -19.87628 -18.09766 -17.41877 -16.85672 -16.37482 -15.90747 -15.64580 -15.35402 -14.89967 -14.41263 -14.22993 -13.87915 -13.61536 -13.09207 -12.96675 -12.62921 -12.48175 -12.32269 -12.00788 -11.54523 -11.50550 -11.37646 -11.05769 -10.86771 -10.82231 -10.69766 -10.27079 -10.16284 -9.73112 -9.21868 -9.03251 -8.48112 -8.40847 -7.94841 -7.53060 -6.07017 -4.14847 0.94714 1.52153 1.99482 3.28159 3.33142 3.35284 3.88025 3.92503 4.05704 4.40857 4.47799 4.79529 4.97266 5.07708 5.22498 5.25354 5.42747 5.49444 5.60837 5.74923 6.02268 6.06255 6.17473 6.20638 6.29740 6.35645 6.44840 6.58864 6.70843 6.75554 6.82188 7.05019 7.14083 7.44598 7.53359 7.71685 8.01698 8.19987 8.53887 8.83914 9.07451 9.51721 10.98140 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021737 B = 0.004839 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.832178 B = 5785.181643 C = 5980.288387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.586 5.586 13 C 0.085 3.915 14 C 0.523 3.477 15 O -0.539 6.539 16 C -0.186 4.186 17 C -0.053 4.053 18 C -0.083 4.083 19 C -0.014 4.014 20 C -0.137 4.137 21 C -0.087 4.087 22 C -0.167 4.167 23 C 0.105 3.895 24 F -0.143 7.143 25 H 0.030 0.970 26 H 0.011 0.989 27 H 0.093 0.907 28 H 0.264 0.736 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.657 0.059 14.782 15.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.203 1.203 11 H -0.202 1.202 12 N -0.316 5.316 13 C -0.059 4.059 14 C 0.312 3.688 15 O -0.420 6.420 16 C -0.207 4.207 17 C -0.072 4.072 18 C -0.084 4.084 19 C -0.032 4.032 20 C -0.156 4.156 21 C -0.105 4.105 22 C -0.186 4.186 23 C 0.086 3.914 24 F -0.122 7.122 25 H 0.049 0.951 26 H 0.030 0.970 27 H 0.112 0.888 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.730 0.746 14.481 14.755 hybrid contribution 0.548 -0.898 -1.082 1.509 sum 3.278 -0.152 13.399 13.795 Atomic orbital electron populations 1.22090 0.98237 0.99327 1.00802 1.18932 0.90773 0.94568 0.79957 0.91785 1.21287 1.31808 1.12970 0.90344 0.92416 1.24885 0.94950 0.94977 0.98942 1.69864 1.36355 1.22616 1.23837 0.86559 0.79267 0.79573 0.82010 1.21153 1.20271 1.20236 1.48220 1.48195 1.11604 1.23602 1.21600 1.01601 0.83320 0.99377 1.18320 0.79687 0.86847 0.83952 1.90828 1.57992 1.16333 1.76832 1.23391 1.01501 1.00746 0.95070 1.22112 0.95462 0.91967 0.97700 1.18837 0.92445 0.93354 1.03760 1.20951 0.96750 0.93596 0.91903 1.20997 0.98137 0.94357 1.02077 1.20962 0.91757 0.99719 0.98042 1.20876 0.99763 0.91915 1.06064 1.17742 0.81061 0.89711 1.02869 1.91446 1.48332 1.79582 1.92793 0.95143 0.97020 0.88811 0.92652 0.93307 0.92787 0.90851 0.85000 0.84976 0.85940 0.85713 0.85614 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.95 37.16 0.33 -3.12 16 2 C 0.26 6.55 2.64 -69.08 -0.18 6.37 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -14.30 8.37 -34.44 -0.29 -14.59 16 5 H 0.06 1.56 7.65 -52.48 -0.40 1.16 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.19 11.32 55.43 0.63 -24.56 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.20 16 9 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.59 -12.43 2.75 -176.93 -0.49 -12.92 16 13 C 0.08 1.41 9.35 59.85 0.56 1.97 16 14 C 0.52 10.74 6.84 -13.01 -0.09 10.65 16 15 O -0.54 -12.75 11.70 5.18 0.06 -12.69 16 16 C -0.19 -2.89 9.07 -37.51 -0.34 -3.23 16 17 C -0.05 -0.76 9.44 -37.18 -0.35 -1.11 16 18 C -0.08 -1.35 4.36 -105.00 -0.46 -1.80 16 19 C -0.01 -0.22 6.73 -39.12 -0.26 -0.48 16 20 C -0.14 -1.99 10.03 -39.64 -0.40 -2.39 16 21 C -0.09 -1.15 10.04 -39.47 -0.40 -1.55 16 22 C -0.17 -2.35 10.01 -39.57 -0.40 -2.75 16 23 C 0.11 1.68 7.30 -38.89 -0.28 1.39 16 24 F -0.14 -2.26 16.83 2.25 0.04 -2.22 16 25 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.69 6.19 -51.93 -0.32 0.37 16 31 H 0.07 1.23 6.43 -51.93 -0.33 0.89 16 32 H 0.13 1.62 6.33 -52.49 -0.33 1.29 16 33 H 0.13 1.49 8.06 -52.48 -0.42 1.06 16 34 H 0.12 1.97 7.44 -52.49 -0.39 1.58 16 35 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 312.36 15.07 4.71 4.71 Total: -1.00 -31.35 312.36 -7.19 -38.54 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -4.47 Total: 1.90 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -2.65 Total: -8.95 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.14 Total: -37.48 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.06 Total: -12.69 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.35 -7.19 -38.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706344630.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.482 kcal (2) G-P(sol) polarization free energy of solvation -31.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds