Wall clock time and date at job start Mon Mar 30 2020 01:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47266 * 2 1 4 4 C 1.50703 * 109.46969 * 240.00112 * 2 1 3 5 5 H 1.08004 * 120.00196 * 239.99879 * 4 2 1 6 6 C 1.37881 * 119.99680 * 60.00284 * 4 2 1 7 7 N 1.31508 * 120.00058 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99773 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47313 * 179.97438 * 8 6 4 10 10 H 1.48500 * 109.47113 * 299.99580 * 8 6 4 11 11 H 1.48501 * 109.47190 * 59.99817 * 8 6 4 12 12 N 1.46503 * 109.47277 * 120.00288 * 2 1 3 13 13 C 1.46498 * 119.99822 * 60.00084 * 12 2 1 14 14 C 1.34772 * 120.00005 * 240.00056 * 12 2 1 15 15 O 1.21711 * 120.00094 * 359.97438 * 14 12 2 16 16 C 1.46339 * 120.00036 * 180.02562 * 14 12 2 17 17 C 1.34893 * 119.99726 * 186.58659 * 16 14 12 18 18 C 1.47088 * 120.00327 * 10.06078 * 17 16 14 19 19 C 1.39892 * 120.18699 * 48.57995 * 18 17 16 20 20 C 1.37810 * 119.84892 * 179.67504 * 19 18 17 21 21 C 1.38493 * 120.24139 * 0.62236 * 20 19 18 22 22 C 1.38273 * 120.38442 * 359.67397 * 21 20 19 23 23 C 1.38237 * 120.14086 * 0.02562 * 22 21 20 24 24 F 1.35094 * 120.11767 * 180.02562 * 23 22 21 25 25 H 1.09003 * 109.46898 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46808 * 299.99490 * 1 2 3 27 27 H 1.08998 * 109.47471 * 59.99962 * 1 2 3 28 28 H 0.97007 * 119.99888 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.47545 * 90.00093 * 13 12 2 30 30 H 1.09001 * 109.46878 * 210.00025 * 13 12 2 31 31 H 1.09001 * 109.47502 * 330.00118 * 13 12 2 32 32 H 1.08001 * 120.00083 * 6.57607 * 16 14 12 33 33 H 1.08006 * 119.99605 * 190.05844 * 17 16 14 34 34 H 1.07999 * 120.07853 * 359.97438 * 19 18 17 35 35 H 1.07996 * 119.88388 * 180.31760 * 20 19 18 36 36 H 1.08001 * 119.81044 * 179.69269 * 21 20 19 37 37 H 1.07994 * 119.92958 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3224 -1.1194 -4.0080 9 1 1.8268 -0.4197 -5.2205 10 1 3.8074 -1.1187 -4.0079 11 1 1.8279 -2.5196 -4.0083 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0876 1.1294 1.8905 16 6 3.2815 -0.7258 3.2778 17 6 3.9440 -0.0380 4.2305 18 6 3.9850 1.4315 4.1825 19 6 2.8076 2.1622 3.9908 20 6 2.8532 3.5391 3.9537 21 6 4.0618 4.2009 4.0925 22 6 5.2324 3.4883 4.2762 23 6 5.2042 2.1070 4.3222 24 9 6.3481 1.4112 4.5022 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.7081 1.1610 -3.4844 29 1 2.4158 -2.7378 0.9715 30 1 1.6238 -2.2853 2.5000 31 1 0.6905 -2.3003 0.9845 32 1 3.1113 -1.7857 3.3967 33 1 4.4442 -0.5664 5.0287 34 1 1.8643 1.6487 3.8771 35 1 1.9438 4.1039 3.8109 36 1 4.0901 5.2800 4.0573 37 1 6.1707 4.0120 4.3840 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706344630.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:35 Heat of formation + Delta-G solvation = -41.538311 kcal Electronic energy + Delta-G solvation = -21398.295575 eV Core-core repulsion = 18055.415692 eV Total energy + Delta-G solvation = -3342.879883 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.87258 -40.99128 -39.50145 -37.15541 -34.93276 -34.67855 -31.72448 -31.40520 -30.19104 -27.58992 -27.27957 -25.44042 -23.64175 -23.19757 -21.47877 -19.47511 -18.76265 -18.42149 -18.08192 -17.20725 -17.12987 -16.56614 -16.51300 -15.97742 -15.74475 -15.14560 -14.87367 -14.59377 -14.40911 -14.15602 -13.81129 -13.72197 -13.44580 -13.21104 -12.96701 -12.84067 -12.69846 -12.58934 -12.52324 -12.16819 -12.12783 -11.98374 -11.18350 -10.94318 -10.61918 -10.45691 -9.65904 -9.19678 -9.18228 -8.14602 -6.31096 -0.23467 0.35872 0.81840 1.39990 1.42186 1.49539 2.31404 2.49844 2.56940 2.74275 3.12824 3.33078 3.67818 3.83720 3.89765 4.12129 4.34265 4.40992 4.47852 4.54161 4.70611 4.80150 4.89170 4.93583 5.02374 5.05091 5.08834 5.10946 5.20863 5.30406 5.44367 5.49083 5.57241 5.68752 5.70892 6.02143 6.07132 6.17484 6.76887 6.89478 7.33958 7.53766 8.88933 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021737 B = 0.004839 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.832178 B = 5785.181643 C = 5980.288387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.264 3.736 3 H 0.011 0.989 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.962 3.038 9 H -0.282 1.282 10 H -0.280 1.280 11 H -0.262 1.262 12 N -0.597 5.597 13 C 0.081 3.919 14 C 0.513 3.487 15 O -0.582 6.582 16 C -0.196 4.196 17 C -0.036 4.036 18 C -0.106 4.106 19 C -0.032 4.032 20 C -0.149 4.149 21 C -0.085 4.085 22 C -0.171 4.171 23 C 0.085 3.915 24 F -0.145 7.145 25 H 0.046 0.954 26 H 0.021 0.979 27 H 0.066 0.934 28 H 0.264 0.736 29 H 0.052 0.948 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.171 0.829 33 H 0.171 0.829 34 H 0.112 0.888 35 H 0.139 0.861 36 H 0.159 0.841 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.336 -1.153 15.802 16.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.162 3.838 3 H 0.029 0.971 4 C -0.578 4.578 5 H 0.075 0.925 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.787 3.213 9 H -0.208 1.208 10 H -0.206 1.206 11 H -0.187 1.187 12 N -0.327 5.327 13 C -0.061 4.061 14 C 0.304 3.696 15 O -0.465 6.465 16 C -0.216 4.216 17 C -0.056 4.056 18 C -0.107 4.107 19 C -0.051 4.051 20 C -0.167 4.167 21 C -0.103 4.103 22 C -0.189 4.189 23 C 0.066 3.934 24 F -0.124 7.124 25 H 0.065 0.935 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.188 0.812 33 H 0.188 0.812 34 H 0.130 0.870 35 H 0.157 0.843 36 H 0.177 0.823 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.403 -0.504 15.528 15.904 hybrid contribution 0.362 -0.406 -1.337 1.443 sum 3.765 -0.910 14.191 14.711 Atomic orbital electron populations 1.21860 0.97133 1.00013 0.99934 1.18481 0.91535 0.92223 0.81608 0.97136 1.21563 1.31845 1.12992 0.91394 0.92539 1.25706 0.95108 0.95654 1.01921 1.70008 1.37273 1.23840 1.24427 0.85557 0.78290 0.79096 0.78353 1.20767 1.20551 1.18677 1.48204 1.48612 1.13344 1.22511 1.21843 1.01348 0.80551 1.02367 1.19157 0.78849 0.86588 0.85034 1.90802 1.59362 1.18362 1.77972 1.23331 1.02657 1.02235 0.93346 1.22559 0.93792 0.91318 0.97897 1.19134 0.92640 0.94644 1.04283 1.21016 0.96602 0.94495 0.92960 1.21330 0.99539 0.94174 1.01689 1.21362 0.90902 1.01431 0.96569 1.21259 1.01151 0.91491 1.05026 1.18002 0.80976 0.90612 1.03811 1.91432 1.48307 1.79730 1.92921 0.93515 0.95959 0.91515 0.92658 0.92944 0.88396 0.91207 0.81174 0.81181 0.86950 0.84292 0.82298 0.82896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.29 8.95 71.98 0.64 -5.65 16 2 C 0.26 13.77 2.64 44.25 0.12 13.89 16 3 H 0.01 0.66 6.90 -2.39 -0.02 0.65 16 4 C -0.54 -29.75 8.37 25.60 0.21 -29.54 16 5 H 0.06 3.05 7.65 -2.91 -0.02 3.03 16 6 C 0.02 0.87 5.30 84.66 0.45 1.32 16 7 N -0.92 -53.21 11.32 21.45 0.24 -52.96 16 8 Si 0.96 43.61 29.54 68.60 2.03 45.63 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 12 N -0.60 -25.26 2.75 -831.91 -2.29 -27.55 16 13 C 0.08 2.53 9.35 127.77 1.19 3.73 16 14 C 0.51 21.06 6.84 86.35 0.59 21.65 16 15 O -0.58 -28.42 11.70 -4.38 -0.05 -28.47 16 16 C -0.20 -5.67 9.07 23.61 0.21 -5.46 16 17 C -0.04 -0.98 9.44 23.82 0.22 -0.75 16 18 C -0.11 -3.38 4.36 -20.11 -0.09 -3.47 16 19 C -0.03 -1.05 6.73 22.57 0.15 -0.90 16 20 C -0.15 -4.30 10.03 22.23 0.22 -4.08 16 21 C -0.08 -2.14 10.04 22.34 0.22 -1.91 16 22 C -0.17 -4.56 10.01 22.28 0.22 -4.34 16 23 C 0.09 2.63 7.30 22.72 0.17 2.80 16 24 F -0.15 -4.41 16.83 44.97 0.76 -3.66 16 25 H 0.05 2.04 6.66 -2.39 -0.02 2.02 16 26 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 3.58 6.07 -2.39 -0.01 3.56 16 28 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 29 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.10 2.17 6.19 -2.39 -0.01 2.15 16 31 H 0.07 2.21 6.43 -2.39 -0.02 2.20 16 32 H 0.17 3.50 6.33 -2.91 -0.02 3.48 16 33 H 0.17 3.22 8.06 -2.91 -0.02 3.19 16 34 H 0.11 3.75 7.44 -2.91 -0.02 3.73 16 35 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 36 H 0.16 2.85 8.06 -2.91 -0.02 2.82 16 37 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -70.60 312.36 6.31 -64.29 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 1.08 Total: 15.42 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 4.55 Total: -12.71 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -2.05 Total: -80.52 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.05 Total: -28.47 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.76 Total: -3.66 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -70.60 6.31 -64.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706344630.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.754 kcal (2) G-P(sol) polarization free energy of solvation -70.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds