Wall clock time and date at job start Mon Mar 30 2020 01:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46888 * 2 1 4 4 C 1.50701 * 109.46933 * 119.99715 * 2 1 3 5 5 H 1.08004 * 119.99664 * 120.00069 * 4 2 1 6 6 C 1.37871 * 120.00088 * 300.00349 * 4 2 1 7 7 N 1.31518 * 120.00307 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99810 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47373 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47110 * 119.99801 * 8 6 4 11 11 H 1.48498 * 109.47037 * 239.99724 * 8 6 4 12 12 N 1.46497 * 109.47403 * 239.99848 * 2 1 3 13 13 C 1.46506 * 120.00137 * 300.00504 * 12 2 1 14 14 C 1.34779 * 119.99953 * 120.27256 * 12 2 1 15 15 O 1.21700 * 119.99827 * 359.72485 * 14 12 2 16 16 C 1.46338 * 119.99821 * 179.72828 * 14 12 2 17 17 C 1.34902 * 119.99681 * 186.59006 * 16 14 12 18 18 C 1.47083 * 120.00172 * 10.06425 * 17 16 14 19 19 C 1.39894 * 120.18797 * 48.57893 * 18 17 16 20 20 C 1.37814 * 119.84906 * 179.67722 * 19 18 17 21 21 C 1.38494 * 120.23763 * 0.62037 * 20 19 18 22 22 C 1.38263 * 120.38536 * 359.68054 * 21 20 19 23 23 C 1.38229 * 120.14598 * 359.97438 * 22 21 20 24 24 F 1.35099 * 120.12274 * 180.02562 * 23 22 21 25 25 H 1.09000 * 109.47023 * 60.00462 * 1 2 3 26 26 H 1.09003 * 109.46953 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47172 * 299.99976 * 1 2 3 28 28 H 0.96990 * 119.99957 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.47654 * 89.99306 * 13 12 2 30 30 H 1.08997 * 109.46819 * 210.00032 * 13 12 2 31 31 H 1.08999 * 109.46579 * 329.99287 * 13 12 2 32 32 H 1.07997 * 120.00497 * 6.58472 * 16 14 12 33 33 H 1.07999 * 119.99524 * 190.06104 * 17 16 14 34 34 H 1.07997 * 120.07581 * 359.97438 * 19 18 17 35 35 H 1.07997 * 119.88487 * 180.32034 * 20 19 18 36 36 H 1.07994 * 119.80413 * 179.69062 * 21 20 19 37 37 H 1.07998 * 119.92699 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8303 2.6034 8 14 2.3224 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1471 -0.1856 4.8160 11 1 1.1677 -1.5865 4.8164 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4280 14 6 2.7978 -0.0372 -2.0805 15 8 3.0917 1.1280 -1.8879 16 6 3.2906 -0.7289 -3.2723 17 6 4.1762 -0.1200 -4.0876 18 6 4.8146 1.1381 -3.6716 19 6 5.3889 1.2488 -2.4008 20 6 5.9911 2.4287 -2.0206 21 6 6.0183 3.5086 -2.8872 22 6 5.4482 3.4121 -4.1431 23 6 4.8462 2.2339 -4.5435 24 9 4.2897 2.1399 -5.7709 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.7094 1.1618 3.4843 29 1 0.7376 -2.1445 -1.9993 30 1 2.4630 -2.5819 -1.9863 31 1 1.5296 -2.5969 -0.4708 32 1 2.9453 -1.7267 -3.4990 33 1 4.4164 -0.5564 -5.0459 34 1 5.3647 0.4100 -1.7209 35 1 6.4392 2.5130 -1.0416 36 1 6.4877 4.4315 -2.5802 37 1 5.4739 4.2587 -4.8131 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706344633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:37 Heat of formation + Delta-G solvation = -25.083899 kcal Electronic energy + Delta-G solvation = -21428.155167 eV Core-core repulsion = 18085.988801 eV Total energy + Delta-G solvation = -3342.166366 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.67265 -39.53004 -38.21229 -35.45133 -33.58752 -32.83570 -30.31249 -29.95366 -28.79192 -26.09911 -25.24298 -24.08981 -22.36479 -21.82533 -19.87694 -18.10233 -17.40595 -16.83801 -16.36001 -15.92056 -15.63364 -15.35194 -14.90863 -14.41597 -14.19955 -13.86608 -13.56966 -13.08132 -12.97710 -12.54703 -12.43614 -12.31176 -11.97924 -11.60951 -11.49008 -11.36340 -11.06593 -10.85995 -10.83395 -10.69696 -10.25672 -10.19021 -9.72227 -9.18631 -9.06114 -8.46482 -8.41363 -7.92885 -7.53356 -6.08917 -4.17133 0.96101 1.54833 2.00982 3.23899 3.32054 3.34620 3.91558 3.95666 4.02714 4.38870 4.48807 4.80977 4.99400 5.09464 5.22153 5.27765 5.44387 5.51438 5.64290 5.77533 6.03053 6.06378 6.18435 6.23421 6.34830 6.39595 6.46502 6.62060 6.74361 6.77560 6.85655 7.07205 7.16871 7.44194 7.54472 7.70812 8.01305 8.18942 8.53594 8.82383 9.07452 9.49618 10.96330 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021809 B = 0.005130 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.587324 B = 5456.789226 C = 6058.012702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.586 5.586 13 C 0.082 3.918 14 C 0.523 3.477 15 O -0.540 6.540 16 C -0.187 4.187 17 C -0.052 4.052 18 C -0.084 4.084 19 C -0.012 4.012 20 C -0.136 4.136 21 C -0.087 4.087 22 C -0.168 4.168 23 C 0.104 3.896 24 F -0.144 7.144 25 H 0.010 0.990 26 H 0.029 0.971 27 H 0.093 0.907 28 H 0.263 0.737 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.402 -1.645 -11.801 14.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.316 5.316 13 C -0.062 4.062 14 C 0.312 3.688 15 O -0.420 6.420 16 C -0.208 4.208 17 C -0.071 4.071 18 C -0.085 4.085 19 C -0.030 4.030 20 C -0.154 4.154 21 C -0.105 4.105 22 C -0.187 4.187 23 C 0.085 3.915 24 F -0.122 7.122 25 H 0.029 0.971 26 H 0.048 0.952 27 H 0.111 0.889 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.401 -0.937 -11.554 13.753 hybrid contribution -0.105 -0.651 0.694 0.957 sum 7.296 -1.588 -10.860 13.180 Atomic orbital electron populations 1.22078 0.98269 0.99347 1.00762 1.18939 0.90857 0.94592 0.79889 0.91803 1.21346 1.31752 1.12957 0.90266 0.92230 1.24894 0.94954 0.94974 0.98959 1.69893 1.36390 1.22596 1.23643 0.86455 0.78616 0.79580 0.82818 1.19821 1.20913 1.20942 1.48224 1.48441 1.11549 1.23384 1.21642 0.98799 0.83415 1.02355 1.18328 0.80120 0.87020 0.83326 1.90824 1.58266 1.16575 1.76355 1.23387 0.99987 1.00423 0.97022 1.22113 0.94248 0.93007 0.97769 1.18836 1.01596 0.93431 0.94673 1.21009 0.91538 0.98132 0.92326 1.21025 1.01292 0.93255 0.99859 1.20965 0.98170 0.98534 0.92812 1.20857 1.02739 0.96705 0.98431 1.17734 0.98174 0.95070 0.80552 1.91441 1.83443 1.96750 1.40606 0.97066 0.95217 0.88885 0.92739 0.93897 0.92650 0.90095 0.85007 0.85006 0.85712 0.85636 0.85635 0.85389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.97 37.16 0.33 -3.19 16 2 C 0.26 6.53 2.64 -69.08 -0.18 6.35 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.52 -13.95 7.99 -34.44 -0.28 -14.22 16 5 H 0.06 1.56 7.33 -52.48 -0.38 1.17 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.97 11.32 55.43 0.63 -24.34 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.59 -12.42 2.75 -176.94 -0.49 -12.90 16 13 C 0.08 1.36 9.11 59.85 0.55 1.90 16 14 C 0.52 10.74 6.84 -13.00 -0.09 10.65 16 15 O -0.54 -12.75 11.69 5.19 0.06 -12.69 16 16 C -0.19 -2.91 9.07 -37.51 -0.34 -3.25 16 17 C -0.05 -0.75 9.44 -37.18 -0.35 -1.10 16 18 C -0.08 -1.39 4.36 -105.00 -0.46 -1.84 16 19 C -0.01 -0.20 6.73 -39.12 -0.26 -0.46 16 20 C -0.14 -2.07 10.03 -39.64 -0.40 -2.46 16 21 C -0.09 -1.18 10.04 -39.48 -0.40 -1.58 16 22 C -0.17 -2.38 10.01 -39.58 -0.40 -2.77 16 23 C 0.10 1.65 7.30 -38.90 -0.28 1.37 16 24 F -0.14 -2.24 16.83 2.25 0.04 -2.20 16 25 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 27 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.74 6.17 -51.93 -0.32 0.42 16 31 H 0.08 1.43 7.02 -51.93 -0.36 1.06 16 32 H 0.13 1.62 6.32 -52.49 -0.33 1.28 16 33 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 34 H 0.12 2.17 7.44 -52.49 -0.39 1.78 16 35 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 313.02 15.07 4.72 4.72 Total: -1.00 -30.82 313.02 -7.25 -38.07 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -4.54 Total: 2.58 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -2.65 Total: -8.97 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.14 Total: -37.24 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.06 Total: -12.69 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.82 -7.25 -38.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706344633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.988 kcal (2) G-P(sol) polarization free energy of solvation -30.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds