Wall clock time and date at job start Mon Mar 30 2020 02:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40033 * 126.08258 * 2 1 4 4 C 1.31330 * 108.75620 * 180.02562 * 3 2 1 5 5 N 1.40027 * 125.69310 * 179.97438 * 4 3 2 6 6 C 1.39839 * 108.61658 * 359.76222 * 4 3 2 7 7 C 1.36671 * 126.07531 * 180.02562 * 2 1 3 8 8 C 1.47176 * 126.42395 * 359.96469 * 7 2 1 9 9 O 1.21635 * 119.99656 * 8.13614 * 8 7 2 10 10 N 1.34775 * 120.00182 * 188.14113 * 8 7 2 11 11 C 1.46500 * 119.99597 * 183.12150 * 10 8 7 12 12 C 1.50704 * 109.47207 * 269.99730 * 11 10 8 13 13 H 1.07999 * 120.00051 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99635 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00623 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99587 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47249 * 59.99974 * 16 14 12 18 18 H 1.48501 * 109.47049 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46881 * 299.99902 * 16 14 12 20 20 C 1.46494 * 119.99990 * 3.12122 * 10 8 7 21 21 C 1.52995 * 109.47362 * 276.15701 * 20 10 8 22 22 C 1.47200 * 109.47336 * 173.55202 * 21 20 10 23 23 N 6.18336 * 159.80983 * 192.75756 * 2 1 3 24 24 H 1.09005 * 109.46786 * 267.17019 * 1 2 3 25 25 H 1.09002 * 109.46808 * 27.16475 * 1 2 3 26 26 H 1.08992 * 109.47522 * 147.16929 * 1 2 3 27 27 H 0.97001 * 119.99571 * 359.97438 * 5 4 3 28 28 H 0.96993 * 120.00163 * 179.97438 * 5 4 3 29 29 H 1.08001 * 126.18962 * 180.28104 * 6 4 3 30 30 H 1.09001 * 109.47532 * 29.99879 * 11 10 8 31 31 H 1.09003 * 109.47060 * 150.00343 * 11 10 8 32 32 H 0.97000 * 120.00416 * 180.02562 * 15 14 12 33 33 H 1.09007 * 109.46629 * 156.15985 * 20 10 8 34 34 H 1.08999 * 109.47506 * 36.16306 * 20 10 8 35 35 H 1.09002 * 109.47474 * 293.55312 * 21 20 10 36 36 H 1.09003 * 109.47008 * 53.55612 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2897 1.1317 0.0000 4 6 3.5434 0.7406 -0.0006 5 7 4.6620 1.5829 -0.0012 6 6 3.5749 -0.6574 0.0046 7 6 2.2698 -1.1046 -0.0005 8 6 1.8272 -2.5083 -0.0004 9 8 0.6497 -2.7746 -0.1489 10 7 2.7265 -3.4985 0.1644 11 6 2.2965 -4.8973 0.0962 12 6 1.9015 -5.3690 1.4719 13 1 1.9641 -4.6943 2.3128 14 6 1.4603 -6.6621 1.6569 15 7 1.3845 -7.4840 0.6330 16 14 0.9700 -7.2467 3.3620 17 1 -0.1470 -6.4103 3.8699 18 1 0.5354 -8.6650 3.2931 19 1 2.1325 -7.1297 4.2786 20 6 4.1340 -3.1760 0.4116 21 6 4.8405 -2.9208 -0.9212 22 6 6.2109 -2.4470 -0.6674 23 7 7.2684 -2.0814 -0.4713 24 1 -0.3633 -0.0507 1.0265 25 1 -0.3633 0.9143 -0.4692 26 1 -0.3634 -0.8634 -0.5571 27 1 4.5441 2.5457 -0.0017 28 1 5.5547 1.2036 -0.0013 29 1 4.4607 -1.2753 0.0097 30 1 1.4429 -4.9827 -0.5762 31 1 3.1160 -5.5115 -0.2771 32 1 1.0737 -8.3936 0.7631 33 1 4.6135 -4.0107 0.9230 34 1 4.1984 -2.2833 1.0338 35 1 4.8767 -3.8460 -1.4964 36 1 4.2930 -2.1644 -1.4837 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725164945.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:11 Heat of formation + Delta-G solvation = 105.945024 kcal Electronic energy + Delta-G solvation = -21561.924254 eV Core-core repulsion = 18277.652441 eV Total energy + Delta-G solvation = -3284.271813 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.24691 -38.87504 -37.18949 -35.58821 -34.67373 -33.12041 -31.40135 -31.17217 -30.03348 -27.31681 -25.87057 -24.31430 -23.68094 -21.63148 -20.55514 -19.02992 -17.71854 -17.06082 -16.70570 -16.50430 -15.64652 -15.52680 -15.45048 -14.94215 -14.73518 -14.21692 -13.99272 -13.54692 -13.26011 -13.02386 -12.89613 -12.55822 -12.35383 -12.19590 -11.87046 -11.79438 -11.36139 -11.06877 -10.96495 -10.70376 -10.61688 -10.34575 -10.20750 -9.80786 -9.35109 -8.64646 -8.51726 -8.01799 -7.77561 -6.13834 -4.18830 1.44024 2.40102 2.68376 2.73639 2.92718 3.28287 3.33039 3.34792 3.46833 3.65422 3.85351 4.15351 4.38099 4.68515 4.93269 5.05345 5.08067 5.21930 5.43141 5.45396 5.52263 5.55685 5.64563 5.80551 5.84020 6.07256 6.30752 6.79606 6.99001 7.21492 7.27594 7.36077 7.49555 7.50470 7.81514 8.04198 8.09423 8.14923 8.63462 8.86308 9.46819 10.94256 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.016653 B = 0.005913 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.023284 B = 4734.390500 C = 5859.630665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.337 5.337 3 N -0.341 5.341 4 C 0.330 3.670 5 N -0.848 5.848 6 C -0.306 4.306 7 C 0.077 3.923 8 C 0.571 3.429 9 O -0.525 6.525 10 N -0.573 5.573 11 C 0.246 3.754 12 C -0.532 4.532 13 H 0.059 0.941 14 C 0.065 3.935 15 N -0.893 5.893 16 Si 0.898 3.102 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.097 3.903 21 C -0.065 4.065 22 C 0.214 3.786 23 N -0.437 5.437 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.107 0.893 27 H 0.401 0.599 28 H 0.408 0.592 29 H 0.174 0.826 30 H 0.049 0.951 31 H 0.041 0.959 32 H 0.265 0.735 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.120 0.880 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.721 12.603 -3.130 13.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.120 5.120 3 N -0.176 5.176 4 C 0.072 3.928 5 N -0.400 5.400 6 C -0.339 4.339 7 C -0.056 4.056 8 C 0.355 3.645 9 O -0.402 6.402 10 N -0.303 5.303 11 C 0.128 3.872 12 C -0.570 4.570 13 H 0.077 0.923 14 C -0.138 4.138 15 N -0.531 5.531 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.029 4.029 21 C -0.106 4.106 22 C -0.104 4.104 23 N -0.115 5.115 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.126 0.874 27 H 0.229 0.771 28 H 0.238 0.762 29 H 0.191 0.809 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.138 0.862 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.574 13.664 -2.970 14.712 hybrid contribution 0.169 -0.957 0.888 1.317 sum 4.742 12.707 -2.082 13.722 Atomic orbital electron populations 1.22069 0.73011 1.04902 1.03902 1.48299 1.06362 1.01431 1.55895 1.77306 0.99670 1.06825 1.33795 1.19020 0.87874 0.89814 0.96086 1.41302 1.03793 1.07338 1.87550 1.22516 0.97272 0.93354 1.20798 1.21332 0.90543 0.90146 1.03590 1.17057 0.86031 0.82651 0.78731 1.90784 1.16142 1.83525 1.49754 1.47966 1.05846 1.08572 1.67908 1.19489 0.96806 0.72645 0.98280 1.21356 1.44941 0.96895 0.93834 0.92256 1.24893 0.95208 0.96497 0.97184 1.69898 1.46615 1.06535 1.30096 0.86562 0.79094 0.77664 0.84150 1.20160 1.21164 1.20193 1.21955 0.82699 1.04152 0.94087 1.20198 0.84238 1.04415 1.01755 1.28996 0.94741 0.93203 0.93421 1.81213 1.12105 1.09698 1.08462 0.90810 0.89786 0.87438 0.77103 0.76218 0.80919 0.93253 0.94076 0.92519 0.88128 0.88681 0.86238 0.86314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.36 10.97 59.85 0.66 2.02 16 2 N -0.34 -5.37 4.06 -63.98 -0.26 -5.63 16 3 N -0.34 -5.33 12.56 31.31 0.39 -4.94 16 4 C 0.33 4.58 8.40 -154.64 -1.30 3.28 16 5 N -0.85 -8.52 9.15 31.30 0.29 -8.23 16 6 C -0.31 -4.27 7.24 -39.08 -0.28 -4.55 16 7 C 0.08 1.26 6.70 -82.18 -0.55 0.71 16 8 C 0.57 10.84 7.60 -12.63 -0.10 10.74 16 9 O -0.53 -11.65 14.38 5.25 0.08 -11.57 16 10 N -0.57 -10.46 2.47 -176.42 -0.44 -10.90 16 11 C 0.25 5.62 5.11 -5.19 -0.03 5.59 16 12 C -0.53 -13.79 9.39 -34.44 -0.32 -14.12 16 13 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -24.74 13.29 55.43 0.74 -24.01 16 16 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 C 0.10 1.33 4.92 -4.05 -0.02 1.31 16 21 C -0.06 -0.70 5.00 -29.52 -0.15 -0.84 16 22 C 0.21 2.47 14.29 -20.76 -0.30 2.18 16 23 N -0.44 -5.93 18.54 42.15 0.78 -5.14 16 24 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.11 1.54 6.38 -51.93 -0.33 1.20 16 27 H 0.40 3.39 8.96 -40.82 -0.37 3.03 16 28 H 0.41 3.41 8.96 -40.82 -0.37 3.04 16 29 H 0.17 2.08 2.12 -52.49 -0.11 1.97 16 30 H 0.05 1.27 7.47 -51.93 -0.39 0.89 16 31 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.10 1.38 8.03 -51.92 -0.42 0.97 16 34 H 0.10 1.25 5.08 -51.93 -0.26 0.98 16 35 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.12 1.24 6.15 -51.93 -0.32 0.92 16 LS Contribution 312.14 15.07 4.70 4.70 Total: -1.00 -32.03 312.14 -5.02 -37.05 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -3.79 Total: 4.98 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -2.48 Total: 7.94 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: 1.50 Total: -58.85 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.08 Total: -11.57 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.03 -5.02 -37.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725164945.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.991 kcal (2) G-P(sol) polarization free energy of solvation -32.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds