Wall clock time and date at job start Mon Mar 30 2020 02:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40033 * 126.08258 * 2 1 4 4 C 1.31330 * 108.75620 * 180.02562 * 3 2 1 5 5 N 1.40027 * 125.69310 * 179.97438 * 4 3 2 6 6 C 1.39839 * 108.61658 * 359.76222 * 4 3 2 7 7 C 1.36671 * 126.07531 * 180.02562 * 2 1 3 8 8 C 1.47176 * 126.42395 * 359.96469 * 7 2 1 9 9 O 1.21635 * 119.99656 * 8.13614 * 8 7 2 10 10 N 1.34775 * 120.00182 * 188.14113 * 8 7 2 11 11 C 1.46500 * 119.99597 * 183.12150 * 10 8 7 12 12 C 1.50704 * 109.47207 * 269.99730 * 11 10 8 13 13 H 1.07999 * 120.00051 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99635 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00623 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99587 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47249 * 59.99974 * 16 14 12 18 18 H 1.48501 * 109.47049 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46881 * 299.99902 * 16 14 12 20 20 C 1.46494 * 119.99990 * 3.12122 * 10 8 7 21 21 C 1.52995 * 109.47362 * 276.15701 * 20 10 8 22 22 C 1.47200 * 109.47336 * 173.55202 * 21 20 10 23 23 N 6.18336 * 159.80983 * 192.75756 * 2 1 3 24 24 H 1.09005 * 109.46786 * 267.17019 * 1 2 3 25 25 H 1.09002 * 109.46808 * 27.16475 * 1 2 3 26 26 H 1.08992 * 109.47522 * 147.16929 * 1 2 3 27 27 H 0.97001 * 119.99571 * 359.97438 * 5 4 3 28 28 H 0.96993 * 120.00163 * 179.97438 * 5 4 3 29 29 H 1.08001 * 126.18962 * 180.28104 * 6 4 3 30 30 H 1.09001 * 109.47532 * 29.99879 * 11 10 8 31 31 H 1.09003 * 109.47060 * 150.00343 * 11 10 8 32 32 H 0.97000 * 120.00416 * 180.02562 * 15 14 12 33 33 H 1.09007 * 109.46629 * 156.15985 * 20 10 8 34 34 H 1.08999 * 109.47506 * 36.16306 * 20 10 8 35 35 H 1.09002 * 109.47474 * 293.55312 * 21 20 10 36 36 H 1.09003 * 109.47008 * 53.55612 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2897 1.1317 0.0000 4 6 3.5434 0.7406 -0.0006 5 7 4.6620 1.5829 -0.0012 6 6 3.5749 -0.6574 0.0046 7 6 2.2698 -1.1046 -0.0005 8 6 1.8272 -2.5083 -0.0004 9 8 0.6497 -2.7746 -0.1489 10 7 2.7265 -3.4985 0.1644 11 6 2.2965 -4.8973 0.0962 12 6 1.9015 -5.3690 1.4719 13 1 1.9641 -4.6943 2.3128 14 6 1.4603 -6.6621 1.6569 15 7 1.3845 -7.4840 0.6330 16 14 0.9700 -7.2467 3.3620 17 1 -0.1470 -6.4103 3.8699 18 1 0.5354 -8.6650 3.2931 19 1 2.1325 -7.1297 4.2786 20 6 4.1340 -3.1760 0.4116 21 6 4.8405 -2.9208 -0.9212 22 6 6.2109 -2.4470 -0.6674 23 7 7.2684 -2.0814 -0.4713 24 1 -0.3633 -0.0507 1.0265 25 1 -0.3633 0.9143 -0.4692 26 1 -0.3634 -0.8634 -0.5571 27 1 4.5441 2.5457 -0.0017 28 1 5.5547 1.2036 -0.0013 29 1 4.4607 -1.2753 0.0097 30 1 1.4429 -4.9827 -0.5762 31 1 3.1160 -5.5115 -0.2771 32 1 1.0737 -8.3936 0.7631 33 1 4.6135 -4.0107 0.9230 34 1 4.1984 -2.2833 1.0338 35 1 4.8767 -3.8460 -1.4964 36 1 4.2930 -2.1644 -1.4837 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725164945.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:11 Heat of formation + Delta-G solvation = 83.958467 kcal Electronic energy + Delta-G solvation = -21562.877662 eV Core-core repulsion = 18277.652441 eV Total energy + Delta-G solvation = -3285.225222 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.45953 -40.27925 -38.34784 -36.87931 -35.72672 -34.98314 -32.77668 -32.26729 -31.25730 -29.08422 -26.95580 -25.57965 -25.36756 -23.01546 -21.72847 -20.31985 -18.87636 -18.39910 -18.14057 -17.92088 -17.05592 -16.68369 -16.60780 -16.42106 -15.93490 -15.57691 -15.50207 -14.74437 -14.38248 -14.25892 -14.21040 -13.94060 -13.64655 -13.47125 -13.23554 -13.05773 -12.90989 -12.68834 -12.51468 -12.15588 -12.04442 -11.71277 -11.65224 -11.47419 -10.88402 -10.55565 -9.85044 -9.58955 -8.81180 -8.16221 -6.27785 0.16607 1.25489 1.43934 1.46113 1.52971 1.68493 1.77678 1.80580 2.12920 2.31236 2.45994 2.84315 3.08079 3.16470 3.46391 3.86396 3.98361 4.04138 4.32949 4.42354 4.46755 4.52190 4.54812 4.75713 4.79399 5.02698 5.09828 5.28618 5.32554 5.56414 5.83209 5.83402 6.12132 6.33069 6.52940 6.55190 6.59144 6.79264 7.16201 7.24015 7.42890 8.90482 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.016653 B = 0.005913 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.023284 B = 4734.390500 C = 5859.630665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.347 5.347 3 N -0.354 5.354 4 C 0.327 3.673 5 N -0.830 5.830 6 C -0.286 4.286 7 C 0.057 3.943 8 C 0.569 3.431 9 O -0.568 6.568 10 N -0.572 5.572 11 C 0.261 3.739 12 C -0.542 4.542 13 H 0.053 0.947 14 C 0.018 3.982 15 N -0.922 5.922 16 Si 0.955 3.045 17 H -0.281 1.281 18 H -0.282 1.282 19 H -0.265 1.265 20 C 0.093 3.907 21 C -0.053 4.053 22 C 0.237 3.763 23 N -0.465 5.465 24 H 0.076 0.924 25 H 0.108 0.892 26 H 0.092 0.908 27 H 0.411 0.589 28 H 0.419 0.581 29 H 0.191 0.809 30 H 0.013 0.987 31 H 0.047 0.953 32 H 0.266 0.734 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.137 0.863 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.193 13.715 -2.666 15.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.131 5.131 3 N -0.190 5.190 4 C 0.068 3.932 5 N -0.385 5.385 6 C -0.320 4.320 7 C -0.075 4.075 8 C 0.356 3.644 9 O -0.447 6.447 10 N -0.301 5.301 11 C 0.140 3.860 12 C -0.581 4.581 13 H 0.071 0.929 14 C -0.182 4.182 15 N -0.562 5.562 16 Si 0.780 3.220 17 H -0.207 1.207 18 H -0.207 1.207 19 H -0.189 1.189 20 C -0.031 4.031 21 C -0.094 4.094 22 C -0.080 4.080 23 N -0.142 5.142 24 H 0.095 0.905 25 H 0.126 0.874 26 H 0.111 0.889 27 H 0.241 0.759 28 H 0.250 0.750 29 H 0.208 0.792 30 H 0.031 0.969 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.155 0.845 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.110 14.809 -2.500 16.214 hybrid contribution -0.256 -1.235 0.728 1.456 sum 5.854 13.575 -1.773 14.889 Atomic orbital electron populations 1.22140 0.72279 1.05469 1.04153 1.48507 1.07035 1.01287 1.56223 1.77281 1.00406 1.06808 1.34463 1.19252 0.88300 0.90210 0.95415 1.41313 1.03208 1.07611 1.86320 1.22653 0.96751 0.93670 1.18929 1.20997 0.91677 0.88881 1.05927 1.17393 0.85472 0.83806 0.77778 1.90758 1.17952 1.84370 1.51651 1.47794 1.07734 1.06861 1.67714 1.19016 0.95697 0.75185 0.96061 1.21667 1.44625 0.96912 0.94911 0.92921 1.25630 0.95327 0.96827 1.00442 1.69992 1.47580 1.06811 1.31799 0.85660 0.78819 0.77112 0.80368 1.20654 1.20703 1.18930 1.22158 0.80282 1.04719 0.95965 1.20060 0.83473 1.05644 1.00189 1.28846 0.94340 0.92289 0.92542 1.81257 1.12929 1.10795 1.09241 0.90499 0.87364 0.88915 0.75926 0.74965 0.79227 0.96852 0.93465 0.92469 0.87880 0.87663 0.84535 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.66 10.97 127.77 1.40 4.06 16 2 N -0.35 -10.78 4.06 -356.33 -1.45 -12.22 16 3 N -0.35 -10.41 12.56 -54.85 -0.69 -11.10 16 4 C 0.33 8.25 8.40 133.20 1.12 9.37 16 5 N -0.83 -14.11 9.15 -54.90 -0.50 -14.61 16 6 C -0.29 -7.36 7.24 22.59 0.16 -7.20 16 7 C 0.06 1.83 6.70 40.67 0.27 2.10 16 8 C 0.57 21.79 7.60 86.59 0.66 22.45 16 9 O -0.57 -26.07 14.38 -4.14 -0.06 -26.13 16 10 N -0.57 -20.77 2.47 -830.33 -2.05 -22.82 16 11 C 0.26 12.08 5.11 85.63 0.44 12.52 16 12 C -0.54 -28.38 9.39 25.60 0.24 -28.14 16 13 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 14 C 0.02 0.94 5.46 84.66 0.46 1.40 16 15 N -0.92 -51.59 13.29 21.45 0.28 -51.31 16 16 Si 0.95 42.51 29.54 68.60 2.03 44.53 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 20 C 0.09 2.39 4.92 86.38 0.43 2.81 16 21 C -0.05 -1.00 5.00 28.79 0.14 -0.86 16 22 C 0.24 4.83 14.29 89.44 1.28 6.11 16 23 N -0.46 -11.44 18.54 20.01 0.37 -11.07 16 24 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 25 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.09 2.75 6.38 -2.39 -0.02 2.73 16 27 H 0.41 5.69 8.96 -92.71 -0.83 4.86 16 28 H 0.42 5.54 8.96 -92.71 -0.83 4.71 16 29 H 0.19 4.04 2.12 -2.91 -0.01 4.03 16 30 H 0.01 0.72 7.47 -2.39 -0.02 0.70 16 31 H 0.05 2.12 8.07 -2.39 -0.02 2.10 16 32 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 33 H 0.10 2.65 8.03 -2.38 -0.02 2.63 16 34 H 0.11 2.52 5.08 -2.39 -0.01 2.51 16 35 H 0.14 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.13 2.32 6.15 -2.39 -0.01 2.31 16 Total: -1.00 -68.96 312.14 4.04 -64.93 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -0.50 Total: 15.18 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: 6.60 Total: 24.62 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -4.03 Total: -123.13 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.06 Total: -26.13 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -68.96 4.04 -64.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725164945.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.885 kcal (2) G-P(sol) polarization free energy of solvation -68.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds