Wall clock time and date at job start Mon Mar 30 2020 01:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 120.00118 * 2 1 4 4 C 1.50699 * 119.99917 * 179.97438 * 2 1 3 5 5 N 1.46496 * 109.47169 * 95.00024 * 4 2 1 6 6 C 1.40006 * 120.00396 * 179.97438 * 5 4 2 7 7 C 1.38641 * 120.09903 * 0.02562 * 6 5 4 8 8 C 1.38280 * 120.00547 * 180.02562 * 7 6 5 9 9 C 1.38268 * 120.20490 * 359.97438 * 8 7 6 10 10 C 1.38241 * 120.19705 * 359.97336 * 9 8 7 11 11 C 1.38729 * 119.99523 * 0.02963 * 10 9 8 12 12 S 1.76194 * 120.10217 * 179.97438 * 11 10 9 13 13 C 1.81396 * 103.00211 * 6.23015 * 12 11 10 14 14 H 1.09001 * 109.47062 * 309.43389 * 13 12 11 15 15 C 1.53002 * 109.47208 * 69.43132 * 13 12 11 16 16 C 1.50697 * 109.47371 * 189.43044 * 13 12 11 17 17 H 1.08005 * 120.00202 * 0.02562 * 16 13 12 18 18 C 1.37881 * 120.00420 * 179.97438 * 16 13 12 19 19 N 1.31516 * 119.99353 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 120.00198 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.47159 * 90.00536 * 20 18 16 22 22 H 1.48504 * 109.46742 * 210.00365 * 20 18 16 23 23 H 1.48492 * 109.47375 * 330.00186 * 20 18 16 24 24 H 1.07997 * 119.99999 * 359.97438 * 1 2 3 25 25 H 1.08000 * 119.99824 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47220 * 179.97438 * 3 2 1 27 27 H 1.09005 * 109.46892 * 299.99980 * 3 2 1 28 28 H 1.08999 * 109.47036 * 59.99511 * 3 2 1 29 29 H 1.09001 * 109.47478 * 335.00263 * 4 2 1 30 30 H 1.09002 * 109.47479 * 215.00181 * 4 2 1 31 31 H 0.97004 * 119.99890 * 359.97438 * 5 4 2 32 32 H 1.08002 * 119.99546 * 0.02562 * 7 6 5 33 33 H 1.08004 * 119.89887 * 180.27223 * 8 7 6 34 34 H 1.08005 * 119.89839 * 180.02562 * 9 8 7 35 35 H 1.07998 * 120.00627 * 180.02562 * 10 9 8 36 36 H 1.09001 * 109.46962 * 67.43683 * 15 13 12 37 37 H 1.08994 * 109.47392 * 187.44181 * 15 13 12 38 38 H 1.09001 * 109.47161 * 307.43875 * 15 13 12 39 39 H 0.97007 * 119.99369 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4119 -1.6684 -1.3752 6 6 3.1199 -2.8492 -1.6295 7 6 3.4919 -3.6764 -0.5810 8 6 4.1916 -4.8419 -0.8344 9 6 4.5221 -5.1867 -2.1320 10 6 4.1545 -4.3686 -3.1839 11 6 3.4524 -3.1974 -2.9391 12 16 2.9830 -2.1523 -4.2777 13 6 3.4653 -3.1162 -5.7367 14 1 4.4980 -3.4477 -5.6280 15 6 2.5497 -4.3350 -5.8683 16 6 3.3401 -2.2585 -6.9694 17 1 3.0044 -1.2356 -6.8837 18 6 3.6552 -2.7793 -8.2066 19 7 4.0645 -4.0248 -8.3109 20 14 3.5006 -1.7158 -9.7345 21 1 4.7850 -1.0119 -9.9797 22 1 3.1748 -2.5725 -10.9029 23 1 2.4193 -0.7177 -9.5357 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 3.1351 1.1059 0.0005 27 1 1.8002 1.8766 -0.8900 28 1 1.8002 1.8766 0.8899 29 1 1.4386 -2.0853 0.4352 30 1 2.9742 -1.1987 0.5900 31 1 2.1521 -1.0909 -2.1100 32 1 3.2352 -3.4105 0.4338 33 1 4.4767 -5.4873 -0.0167 34 1 5.0683 -6.0984 -2.3243 35 1 4.4138 -4.6411 -4.1963 36 1 1.5388 -4.0057 -6.1084 37 1 2.9192 -4.9829 -6.6630 38 1 2.5389 -4.8846 -4.9270 39 1 4.2858 -4.3912 -9.1813 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731352376.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:01 Heat of formation + Delta-G solvation = 32.302050 kcal Electronic energy + Delta-G solvation = -18693.816170 eV Core-core repulsion = 15920.351421 eV Total energy + Delta-G solvation = -2773.464749 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.99799 -36.83164 -34.25305 -33.70280 -31.00949 -29.92925 -28.93050 -27.44683 -25.63165 -25.27721 -22.41449 -21.62525 -20.88152 -18.83291 -17.51229 -16.26739 -16.11240 -15.78406 -15.09237 -14.88866 -14.44336 -14.15261 -13.67561 -13.49836 -13.36570 -13.14396 -13.04096 -12.54338 -12.15412 -11.86224 -11.84845 -11.61186 -11.15954 -11.09480 -10.99754 -10.93690 -10.52840 -10.38936 -9.92897 -9.80372 -9.36568 -9.35836 -8.98118 -8.84400 -8.47276 -7.42089 -6.26964 -6.18780 -4.27041 1.79337 1.90027 2.03083 2.65074 3.23748 3.30029 3.34730 3.68666 3.97327 4.26657 4.32341 4.60313 4.76265 5.13636 5.27150 5.29504 5.44174 5.45595 5.53893 5.55885 5.69727 5.73197 5.82490 5.93511 6.10810 6.35144 6.38964 6.57664 6.63558 6.64446 6.78102 6.80354 6.83907 7.03424 7.23523 7.38898 7.63674 7.65346 7.80142 8.01905 8.03999 8.71545 9.36581 10.87600 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017370 B = 0.004963 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.590824 B = 5639.902492 C = 6940.376475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.143 4.143 3 C -0.119 4.119 4 C 0.164 3.836 5 N -0.741 5.741 6 C 0.222 3.778 7 C -0.191 4.191 8 C -0.094 4.094 9 C -0.161 4.161 10 C -0.088 4.088 11 C -0.132 4.132 12 S -0.184 6.184 13 C 0.101 3.899 14 H 0.050 0.950 15 C -0.138 4.138 16 C -0.510 4.510 17 H 0.066 0.934 18 C 0.071 3.929 19 N -0.886 5.886 20 Si 0.906 3.094 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.405 0.595 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.133 0.867 36 H 0.040 0.960 37 H 0.088 0.912 38 H 0.020 0.980 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.088 3.181 15.856 16.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.144 4.144 3 C -0.176 4.176 4 C 0.040 3.960 5 N -0.373 5.373 6 C 0.114 3.886 7 C -0.216 4.216 8 C -0.116 4.116 9 C -0.183 4.183 10 C -0.113 4.113 11 C -0.249 4.249 12 S 0.062 5.938 13 C -0.026 4.026 14 H 0.068 0.932 15 C -0.197 4.197 16 C -0.549 4.549 17 H 0.084 0.916 18 C -0.133 4.133 19 N -0.524 5.524 20 Si 0.733 3.267 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 H 0.119 0.881 25 H 0.119 0.881 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.242 0.758 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.150 0.850 36 H 0.059 0.941 37 H 0.107 0.893 38 H 0.039 0.961 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.597 4.235 15.831 16.777 hybrid contribution 0.419 -0.601 -1.113 1.333 sum -3.178 3.633 14.717 15.489 Atomic orbital electron populations 1.23815 0.95252 1.02225 0.99535 1.21819 0.95497 0.95652 1.01385 1.20847 1.00362 0.94353 1.02038 1.20252 0.98006 0.93047 0.84702 1.44725 1.62257 1.23383 1.06981 1.17323 0.92463 0.87118 0.91661 1.20403 1.06954 0.97255 0.96975 1.20744 0.98362 0.96076 0.96406 1.20792 1.04334 1.00623 0.92540 1.21239 0.96731 0.93243 1.00056 1.21429 1.06926 1.01010 0.95512 1.84904 1.78537 1.30312 1.00063 1.21031 0.97910 0.94369 0.89287 0.93242 1.22078 0.99303 0.98503 0.99849 1.20633 1.46645 0.98115 0.89528 0.91606 1.24887 0.94445 0.95224 0.98790 1.69891 1.44207 1.13486 1.24815 0.86366 0.78661 0.80056 0.81662 1.20386 1.20975 1.19661 0.88103 0.88150 0.91718 0.91328 0.91591 0.92219 0.92092 0.75807 0.86663 0.86821 0.86742 0.84978 0.94079 0.89343 0.96133 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 13.93 29.01 0.40 -1.24 16 2 C -0.14 -1.50 5.42 -101.07 -0.55 -2.04 16 3 C -0.12 -1.11 10.05 36.00 0.36 -0.75 16 4 C 0.16 1.93 4.99 -5.20 -0.03 1.90 16 5 N -0.74 -11.29 5.68 -59.62 -0.34 -11.63 16 6 C 0.22 3.84 6.66 -83.49 -0.56 3.29 16 7 C -0.19 -2.90 9.31 -39.42 -0.37 -3.27 16 8 C -0.09 -1.39 10.04 -39.55 -0.40 -1.78 16 9 C -0.16 -2.64 10.04 -39.57 -0.40 -3.04 16 10 C -0.09 -1.70 8.01 -39.40 -0.32 -2.01 16 11 C -0.13 -2.63 5.96 -38.92 -0.23 -2.86 16 12 S -0.18 -4.05 19.75 -107.50 -2.12 -6.17 16 13 C 0.10 2.54 1.98 -27.88 -0.06 2.49 16 14 H 0.05 1.32 6.87 -51.92 -0.36 0.97 16 15 C -0.14 -3.32 8.35 37.16 0.31 -3.01 16 16 C -0.51 -13.85 8.57 -34.44 -0.30 -14.15 16 17 H 0.07 1.80 7.71 -52.48 -0.40 1.40 16 18 C 0.07 1.90 5.30 -17.82 -0.09 1.81 16 19 N -0.89 -24.41 11.41 55.43 0.63 -23.78 16 20 Si 0.91 20.89 29.54 -169.99 -5.02 15.86 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H 0.10 0.83 8.05 -52.49 -0.42 0.41 16 25 H 0.10 0.96 7.99 -52.49 -0.42 0.54 16 26 H 0.06 0.62 8.00 -51.93 -0.42 0.21 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.67 7.80 -51.93 -0.40 0.26 16 30 H 0.06 0.68 7.95 -51.93 -0.41 0.26 16 31 H 0.41 6.60 7.01 -40.82 -0.29 6.31 16 32 H 0.12 1.45 6.74 -52.49 -0.35 1.10 16 33 H 0.11 1.33 8.06 -52.48 -0.42 0.90 16 34 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 35 H 0.13 2.75 5.00 -52.49 -0.26 2.49 16 36 H 0.04 0.99 8.13 -51.93 -0.42 0.57 16 37 H 0.09 2.28 6.31 -51.93 -0.33 1.95 16 38 H 0.02 0.44 6.09 -51.93 -0.32 0.13 16 39 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 330.67 15.07 4.98 4.98 Total: -1.00 -27.94 330.67 -9.71 -37.64 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -5.63 Total: 7.75 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: -2.21 Total: -24.66 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.29 Total: -35.40 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: -4.05 SS G_CDS: -2.12 Total: -6.17 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.94 -9.71 -37.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731352376.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.945 kcal (2) G-P(sol) polarization free energy of solvation -27.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds