Wall clock time and date at job start Mon Mar 30 2020 01:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46785 * 2 1 4 4 C 1.50700 * 109.47177 * 120.00157 * 2 1 3 5 5 N 1.28024 * 119.99922 * 240.00346 * 4 2 1 6 6 N 1.40095 * 120.00056 * 179.97438 * 5 4 2 7 7 C 1.38508 * 120.00162 * 179.97438 * 6 5 4 8 8 C 1.39641 * 120.05113 * 179.97438 * 7 6 5 9 9 C 1.38278 * 118.02865 * 180.02562 * 8 7 6 10 10 C 1.40084 * 117.99819 * 0.02562 * 9 8 7 11 11 C 1.47846 * 120.09666 * 180.02562 * 10 9 8 12 12 N 1.34767 * 120.00260 * 179.97438 * 11 10 9 13 13 O 1.21560 * 119.99371 * 359.97438 * 11 10 9 14 14 N 1.32783 * 119.81290 * 0.02562 * 10 9 8 15 15 N 1.28364 * 122.10373 * 359.97438 * 14 10 9 16 16 C 1.52995 * 109.47105 * 240.00117 * 2 1 3 17 17 C 1.50705 * 109.47014 * 65.00075 * 16 2 1 18 18 H 1.07993 * 120.00040 * 359.97438 * 17 16 2 19 19 C 1.37878 * 119.99626 * 180.02562 * 17 16 2 20 20 N 1.31514 * 120.00301 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99556 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47212 * 89.99772 * 21 19 17 23 23 H 1.48501 * 109.46729 * 209.99290 * 21 19 17 24 24 H 1.48493 * 109.47053 * 329.99364 * 21 19 17 25 25 H 1.08997 * 109.47669 * 59.99939 * 1 2 3 26 26 H 1.09000 * 109.46785 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47380 * 299.99619 * 1 2 3 28 28 H 1.07998 * 120.00036 * 60.00204 * 4 2 1 29 29 H 0.97006 * 119.99994 * 0.02562 * 6 5 4 30 30 H 1.08002 * 120.98693 * 0.04902 * 8 7 6 31 31 H 1.07995 * 121.00176 * 180.02562 * 9 8 7 32 32 H 0.97001 * 120.00240 * 0.02562 * 12 11 10 33 33 H 0.97004 * 120.00085 * 180.02562 * 12 11 10 34 34 H 1.09006 * 109.47052 * 184.99851 * 16 2 1 35 35 H 1.08996 * 109.47545 * 304.99713 * 16 2 1 36 36 H 0.97001 * 119.99655 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.7683 -0.0882 2.0732 6 7 3.2349 -0.7485 3.2173 7 6 4.0316 -0.0755 4.1288 8 6 4.4968 -0.7325 5.2699 9 6 5.2886 -0.0207 6.1521 10 6 5.5751 1.3162 5.8470 11 6 6.4177 2.1203 6.7576 12 7 6.6925 3.4061 6.4621 13 8 6.8626 1.6215 7.7730 14 7 5.0877 1.8593 4.7377 15 7 4.3527 1.1969 3.9198 16 6 2.0400 -0.7212 -1.2492 17 6 1.6413 0.0572 -2.4766 18 1 1.0800 0.9742 -2.3757 19 6 1.9923 -0.4021 -3.7283 20 7 2.6755 -1.5192 -3.8512 21 14 1.4975 0.5623 -5.2497 22 1 2.5627 1.5419 -5.5829 23 1 1.3103 -0.3719 -6.3887 24 1 0.2264 1.2835 -4.9868 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.7715 -1.7444 1.4013 29 1 3.0006 -1.6772 3.3708 30 1 4.2458 -1.7660 5.4576 31 1 5.6747 -0.4815 7.0492 32 1 6.3372 3.8042 5.6520 33 1 7.2457 3.9336 7.0594 34 1 3.1264 -0.7994 -1.2056 35 1 1.6055 -1.7197 -1.2952 36 1 2.9227 -1.8421 -4.7318 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766025242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:49 Heat of formation + Delta-G solvation = 50.901462 kcal Electronic energy + Delta-G solvation = -19716.973732 eV Core-core repulsion = 16430.315051 eV Total energy + Delta-G solvation = -3286.658681 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.25637 -39.31043 -37.69931 -35.54257 -34.08618 -33.37217 -33.00247 -31.87177 -29.55354 -27.02716 -25.44879 -24.86295 -23.64236 -21.70814 -21.61454 -19.38175 -18.50386 -18.09939 -17.83199 -16.93500 -16.41489 -16.02973 -15.71722 -15.00391 -14.64829 -14.55314 -14.25831 -13.64541 -13.42837 -13.21235 -13.17310 -12.36913 -12.01325 -11.80604 -11.25434 -10.96454 -10.80927 -10.65932 -10.49738 -10.47857 -10.39854 -10.15252 -9.97059 -9.89635 -9.69042 -9.42853 -9.14226 -8.40780 -8.09447 -6.05668 -4.07694 0.39949 0.63760 2.28041 2.34415 2.67555 3.13266 3.30563 3.37204 3.39738 3.58480 3.83040 4.19528 4.42165 4.43033 4.50941 4.79469 5.02208 5.12976 5.31179 5.46424 5.62662 5.71548 5.89538 6.03988 6.19651 6.36848 6.47480 6.72658 6.76954 6.92004 6.92089 7.04420 7.56086 7.65327 7.92036 7.92208 8.16586 8.32738 8.61616 8.97548 9.56487 11.05797 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.029691 B = 0.002750 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.820081 B =10179.990497 C =10576.625989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.040 4.040 3 H 0.082 0.918 4 C 0.110 3.890 5 N -0.251 5.251 6 N -0.561 5.561 7 C 0.382 3.618 8 C -0.187 4.187 9 C -0.023 4.023 10 C -0.052 4.052 11 C 0.593 3.407 12 N -0.836 5.836 13 O -0.544 6.544 14 N -0.165 5.165 15 N -0.261 5.261 16 C 0.033 3.967 17 C -0.516 4.516 18 H 0.060 0.940 19 C 0.057 3.943 20 N -0.896 5.896 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.273 1.273 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.035 0.965 28 H 0.102 0.898 29 H 0.394 0.606 30 H 0.154 0.846 31 H 0.161 0.839 32 H 0.413 0.587 33 H 0.406 0.594 34 H 0.018 0.982 35 H 0.021 0.979 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.586 2.036 19.106 19.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.061 4.061 3 H 0.100 0.900 4 C -0.105 4.105 5 N -0.052 5.052 6 N -0.281 5.281 7 C 0.142 3.858 8 C -0.221 4.221 9 C -0.052 4.052 10 C -0.202 4.202 11 C 0.376 3.624 12 N -0.399 5.399 13 O -0.420 6.420 14 N -0.015 5.015 15 N -0.115 5.115 16 C -0.005 4.005 17 C -0.554 4.554 18 H 0.078 0.922 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.720 3.280 22 H -0.206 1.206 23 H -0.213 1.213 24 H -0.198 1.198 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.119 0.881 29 H 0.234 0.766 30 H 0.172 0.828 31 H 0.179 0.821 32 H 0.244 0.756 33 H 0.237 0.763 34 H 0.037 0.963 35 H 0.039 0.961 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.165 3.612 18.828 19.431 hybrid contribution -0.420 -1.844 -0.189 1.901 sum 2.745 1.768 18.639 18.923 Atomic orbital electron populations 1.21678 0.94264 1.01440 1.01254 1.20400 0.95493 1.00252 0.89977 0.89966 1.26808 0.91531 0.97881 0.94263 1.74693 1.12396 1.23634 0.94502 1.45444 1.50646 1.12085 1.19934 1.19749 0.87784 0.91441 0.86844 1.21704 1.02977 1.02578 0.94870 1.22043 0.91902 0.92557 0.98667 1.22362 1.05077 0.94927 0.97815 1.17439 0.78974 0.81954 0.84025 1.43631 1.54823 1.12414 1.29042 1.90829 1.53155 1.71602 1.26459 1.73118 1.01140 1.28529 0.98675 1.73483 1.12135 1.04317 1.21539 1.19131 0.96515 0.95545 0.89282 1.21154 1.35199 1.08479 0.90582 0.92168 1.25004 0.95149 0.95045 0.99187 1.69957 1.38776 1.21155 1.23614 0.86582 0.79010 0.79774 0.82588 1.20634 1.21313 1.19774 0.90638 0.93161 0.94554 0.88080 0.76571 0.82819 0.82124 0.75606 0.76335 0.96317 0.96102 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.99 37.16 0.33 -1.79 16 2 C -0.04 -0.75 2.75 -91.77 -0.25 -1.01 16 3 H 0.08 1.65 8.11 -51.93 -0.42 1.23 16 4 C 0.11 1.77 9.66 -13.87 -0.13 1.63 16 5 N -0.25 -4.20 10.97 32.67 0.36 -3.84 16 6 N -0.56 -7.45 6.39 31.22 0.20 -7.25 16 7 C 0.38 5.13 7.68 -154.89 -1.19 3.94 16 8 C -0.19 -1.82 10.04 -39.04 -0.39 -2.21 16 9 C -0.02 -0.23 9.71 -38.87 -0.38 -0.61 16 10 C -0.05 -0.63 6.83 -82.83 -0.57 -1.19 16 11 C 0.59 6.76 8.08 -12.33 -0.10 6.66 16 12 N -0.84 -6.72 8.86 30.53 0.27 -6.45 16 13 O -0.54 -7.50 17.22 5.31 0.09 -7.41 16 14 N -0.17 -2.31 10.73 33.32 0.36 -1.95 16 15 N -0.26 -4.15 11.08 31.23 0.35 -3.80 16 16 C 0.03 0.80 4.43 -27.88 -0.12 0.67 16 17 C -0.52 -13.62 8.41 -34.44 -0.29 -13.91 16 18 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -25.92 13.29 55.43 0.74 -25.18 16 21 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 25 H 0.07 1.35 6.95 -51.93 -0.36 0.98 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.10 1.35 8.00 -52.49 -0.42 0.93 16 29 H 0.39 3.79 8.63 -182.60 -1.58 2.21 16 30 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.16 1.29 7.71 -52.49 -0.40 0.89 16 32 H 0.41 2.99 8.17 -40.82 -0.33 2.66 16 33 H 0.41 2.36 8.93 -40.82 -0.36 2.00 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 323.91 15.07 4.88 4.88 Total: -1.00 -33.25 323.91 -6.47 -39.71 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -5.50 Total: 1.69 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -3.19 Total: -6.32 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 2.27 Total: -48.48 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: 0.09 Total: -7.41 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.25 -6.47 -39.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766025242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.616 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds