Wall clock time and date at job start Mon Mar 30 2020 01:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46785 * 2 1 4 4 C 1.50700 * 109.47177 * 120.00157 * 2 1 3 5 5 N 1.28024 * 119.99922 * 240.00346 * 4 2 1 6 6 N 1.40095 * 120.00056 * 179.97438 * 5 4 2 7 7 C 1.38508 * 120.00162 * 179.97438 * 6 5 4 8 8 C 1.39641 * 120.05113 * 179.97438 * 7 6 5 9 9 C 1.38278 * 118.02865 * 180.02562 * 8 7 6 10 10 C 1.40084 * 117.99819 * 0.02562 * 9 8 7 11 11 C 1.47846 * 120.09666 * 180.02562 * 10 9 8 12 12 N 1.34767 * 120.00260 * 179.97438 * 11 10 9 13 13 O 1.21560 * 119.99371 * 359.97438 * 11 10 9 14 14 N 1.32783 * 119.81290 * 0.02562 * 10 9 8 15 15 N 1.28364 * 122.10373 * 359.97438 * 14 10 9 16 16 C 1.52995 * 109.47105 * 240.00117 * 2 1 3 17 17 C 1.50705 * 109.47014 * 65.00075 * 16 2 1 18 18 H 1.07993 * 120.00040 * 359.97438 * 17 16 2 19 19 C 1.37878 * 119.99626 * 180.02562 * 17 16 2 20 20 N 1.31514 * 120.00301 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99556 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47212 * 89.99772 * 21 19 17 23 23 H 1.48501 * 109.46729 * 209.99290 * 21 19 17 24 24 H 1.48493 * 109.47053 * 329.99364 * 21 19 17 25 25 H 1.08997 * 109.47669 * 59.99939 * 1 2 3 26 26 H 1.09000 * 109.46785 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47380 * 299.99619 * 1 2 3 28 28 H 1.07998 * 120.00036 * 60.00204 * 4 2 1 29 29 H 0.97006 * 119.99994 * 0.02562 * 6 5 4 30 30 H 1.08002 * 120.98693 * 0.04902 * 8 7 6 31 31 H 1.07995 * 121.00176 * 180.02562 * 9 8 7 32 32 H 0.97001 * 120.00240 * 0.02562 * 12 11 10 33 33 H 0.97004 * 120.00085 * 180.02562 * 12 11 10 34 34 H 1.09006 * 109.47052 * 184.99851 * 16 2 1 35 35 H 1.08996 * 109.47545 * 304.99713 * 16 2 1 36 36 H 0.97001 * 119.99655 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.7683 -0.0882 2.0732 6 7 3.2349 -0.7485 3.2173 7 6 4.0316 -0.0755 4.1288 8 6 4.4968 -0.7325 5.2699 9 6 5.2886 -0.0207 6.1521 10 6 5.5751 1.3162 5.8470 11 6 6.4177 2.1203 6.7576 12 7 6.6925 3.4061 6.4621 13 8 6.8626 1.6215 7.7730 14 7 5.0877 1.8593 4.7377 15 7 4.3527 1.1969 3.9198 16 6 2.0400 -0.7212 -1.2492 17 6 1.6413 0.0572 -2.4766 18 1 1.0800 0.9742 -2.3757 19 6 1.9923 -0.4021 -3.7283 20 7 2.6755 -1.5192 -3.8512 21 14 1.4975 0.5623 -5.2497 22 1 2.5627 1.5419 -5.5829 23 1 1.3103 -0.3719 -6.3887 24 1 0.2264 1.2835 -4.9868 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.7715 -1.7444 1.4013 29 1 3.0006 -1.6772 3.3708 30 1 4.2458 -1.7660 5.4576 31 1 5.6747 -0.4815 7.0492 32 1 6.3372 3.8042 5.6520 33 1 7.2457 3.9336 7.0594 34 1 3.1264 -0.7994 -1.2056 35 1 1.6055 -1.7197 -1.2952 36 1 2.9227 -1.8421 -4.7318 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766025242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:49 Heat of formation + Delta-G solvation = 25.798059 kcal Electronic energy + Delta-G solvation = -19718.062297 eV Core-core repulsion = 16430.315051 eV Total energy + Delta-G solvation = -3287.747246 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.19550 -40.23443 -38.90963 -36.93893 -35.10893 -34.56771 -34.15658 -33.38655 -30.67171 -28.82154 -26.38618 -26.17038 -25.05028 -23.10986 -22.53770 -20.75994 -19.42700 -19.08242 -18.90446 -18.36175 -17.72976 -17.17574 -16.68311 -16.48837 -15.83597 -15.58333 -15.24116 -14.88920 -14.76788 -14.58240 -14.36190 -13.98429 -13.44888 -13.02023 -12.86864 -12.78128 -12.44765 -12.21644 -11.91169 -11.64087 -11.41312 -11.36455 -11.28534 -11.07249 -11.00754 -10.75749 -10.66637 -10.50207 -9.17248 -8.14911 -6.22954 -0.52926 -0.21979 1.13952 1.34289 1.44900 1.46050 1.56184 1.68097 2.30938 2.46067 2.64658 2.91110 3.20169 3.29846 3.61382 3.78220 3.91915 3.98506 4.04806 4.45596 4.49595 4.60628 4.70869 4.87679 4.99108 5.08814 5.25246 5.36371 5.50411 5.55960 5.74594 5.77769 5.84315 5.89654 6.26001 6.29409 6.91911 7.06274 7.15964 7.45266 7.64765 8.96985 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.029691 B = 0.002750 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.820081 B =10179.990497 C =10576.625989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.031 4.031 3 H 0.063 0.937 4 C 0.106 3.894 5 N -0.276 5.276 6 N -0.554 5.554 7 C 0.362 3.638 8 C -0.160 4.160 9 C -0.024 4.024 10 C -0.053 4.053 11 C 0.592 3.408 12 N -0.818 5.818 13 O -0.570 6.570 14 N -0.185 5.185 15 N -0.309 5.309 16 C 0.040 3.960 17 C -0.527 4.527 18 H 0.065 0.935 19 C 0.001 3.999 20 N -0.934 5.934 21 Si 0.957 3.043 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.260 1.260 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.131 0.869 29 H 0.414 0.586 30 H 0.199 0.801 31 H 0.186 0.814 32 H 0.419 0.581 33 H 0.418 0.582 34 H -0.016 1.016 35 H 0.009 0.991 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.084 1.774 20.564 20.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.052 4.052 3 H 0.081 0.919 4 C -0.108 4.108 5 N -0.078 5.078 6 N -0.279 5.279 7 C 0.121 3.879 8 C -0.194 4.194 9 C -0.053 4.053 10 C -0.204 4.204 11 C 0.374 3.626 12 N -0.382 5.382 13 O -0.448 6.448 14 N -0.033 5.033 15 N -0.162 5.162 16 C 0.002 3.998 17 C -0.565 4.565 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.575 5.575 21 Si 0.783 3.217 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.184 1.184 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.148 0.852 29 H 0.257 0.743 30 H 0.216 0.784 31 H 0.204 0.796 32 H 0.250 0.750 33 H 0.251 0.749 34 H 0.002 0.998 35 H 0.028 0.972 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.659 3.402 20.287 20.741 hybrid contribution -0.157 -1.724 -0.488 1.799 sum 2.502 1.678 19.799 20.027 Atomic orbital electron populations 1.21593 0.92349 1.02337 1.01618 1.20066 0.97064 0.98675 0.89428 0.91891 1.26438 0.92105 0.98866 0.93425 1.74483 1.11909 1.25711 0.95679 1.45180 1.50861 1.12875 1.18935 1.20065 0.88418 0.91330 0.88036 1.22107 1.00667 1.04121 0.92466 1.22391 0.91610 0.91788 0.99495 1.22683 1.04401 0.96101 0.97243 1.17439 0.78870 0.82665 0.83614 1.43543 1.53940 1.11518 1.29172 1.90818 1.54344 1.72278 1.27397 1.73044 1.01913 1.28926 0.99380 1.73324 1.13687 1.06125 1.23094 1.18957 0.94255 0.95307 0.91268 1.21610 1.34517 1.08673 0.91707 0.91635 1.25872 0.95292 0.96007 1.02485 1.70083 1.40282 1.22879 1.24270 0.85556 0.79054 0.78361 0.78762 1.20501 1.21070 1.18385 0.92256 0.91990 0.92121 0.85177 0.74270 0.78394 0.79640 0.74980 0.74912 0.99750 0.97239 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.88 8.99 71.98 0.65 -3.23 16 2 C -0.03 -1.18 2.75 -11.54 -0.03 -1.21 16 3 H 0.06 2.59 8.11 -2.39 -0.02 2.58 16 4 C 0.11 3.35 9.66 88.66 0.86 4.20 16 5 N -0.28 -9.08 10.97 -50.46 -0.55 -9.64 16 6 N -0.55 -13.81 6.39 -55.16 -0.35 -14.17 16 7 C 0.36 9.17 7.68 133.21 1.02 10.19 16 8 C -0.16 -2.61 10.04 22.62 0.23 -2.38 16 9 C -0.02 -0.43 9.71 22.73 0.22 -0.21 16 10 C -0.05 -1.21 6.83 41.99 0.29 -0.92 16 11 C 0.59 12.76 8.08 86.79 0.70 13.46 16 12 N -0.82 -12.24 8.86 -175.61 -1.56 -13.80 16 13 O -0.57 -14.89 17.22 -3.90 -0.07 -14.96 16 14 N -0.19 -5.10 10.73 -48.49 -0.52 -5.62 16 15 N -0.31 -9.78 11.08 -55.12 -0.61 -10.39 16 16 C 0.04 1.97 4.43 29.85 0.13 2.10 16 17 C -0.53 -28.24 8.41 25.60 0.22 -28.02 16 18 H 0.07 3.36 7.06 -2.91 -0.02 3.34 16 19 C 0.00 0.05 5.46 84.65 0.46 0.51 16 20 N -0.93 -55.17 13.29 21.45 0.28 -54.89 16 21 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 24 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 25 H 0.06 2.08 6.95 -2.39 -0.02 2.06 16 26 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.13 3.23 8.00 -2.91 -0.02 3.21 16 29 H 0.41 6.88 8.63 -213.32 -1.84 5.04 16 30 H 0.20 1.36 8.06 -2.91 -0.02 1.33 16 31 H 0.19 2.35 7.71 -2.91 -0.02 2.33 16 32 H 0.42 5.73 8.17 -92.71 -0.76 4.97 16 33 H 0.42 4.30 8.93 -92.71 -0.83 3.47 16 34 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16 35 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -73.77 323.91 1.11 -72.66 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -2.28 Total: 11.12 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 4.74 Total: -5.51 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -3.31 Total: -108.50 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.07 Total: -14.96 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -73.77 1.11 -72.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766025242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.456 kcal (2) G-P(sol) polarization free energy of solvation -73.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds