Wall clock time and date at job start Mon Mar 30 2020 01:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46887 * 2 1 4 4 C 1.50702 * 109.46919 * 239.99852 * 2 1 3 5 5 N 1.28015 * 119.99931 * 119.99759 * 4 2 1 6 6 N 1.40102 * 120.00157 * 179.97438 * 5 4 2 7 7 C 1.38507 * 120.00060 * 180.02562 * 6 5 4 8 8 C 1.39634 * 120.04861 * 180.02562 * 7 6 5 9 9 C 1.38285 * 118.03018 * 179.97438 * 8 7 6 10 10 C 1.40085 * 117.99689 * 359.97438 * 9 8 7 11 11 C 1.47841 * 120.09780 * 179.97438 * 10 9 8 12 12 N 1.34773 * 120.00435 * 179.97438 * 11 10 9 13 13 O 1.21557 * 119.99729 * 0.02562 * 11 10 9 14 14 N 1.32791 * 119.80834 * 359.97438 * 10 9 8 15 15 N 1.28351 * 122.10777 * 0.02562 * 14 10 9 16 16 C 1.52993 * 109.47076 * 120.00164 * 2 1 3 17 17 C 1.50708 * 109.46944 * 294.99729 * 16 2 1 18 18 H 1.07998 * 120.00155 * 0.02562 * 17 16 2 19 19 C 1.37884 * 119.99586 * 180.02562 * 17 16 2 20 20 N 1.31515 * 120.00352 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99524 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47226 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47317 * 120.00181 * 21 19 17 24 24 H 1.48504 * 109.46890 * 239.99856 * 21 19 17 25 25 H 1.08999 * 109.47100 * 300.00196 * 1 2 3 26 26 H 1.08998 * 109.47117 * 59.99958 * 1 2 3 27 27 H 1.09005 * 109.47533 * 180.02562 * 1 2 3 28 28 H 1.08004 * 119.99938 * 300.00159 * 4 2 1 29 29 H 0.97000 * 119.99619 * 0.02562 * 6 5 4 30 30 H 1.07996 * 120.98838 * 0.02562 * 8 7 6 31 31 H 1.08001 * 121.00147 * 179.72519 * 9 8 7 32 32 H 0.97000 * 119.99585 * 0.02562 * 12 11 10 33 33 H 0.96997 * 120.00594 * 180.02562 * 12 11 10 34 34 H 1.09005 * 109.47327 * 54.99485 * 16 2 1 35 35 H 1.08999 * 109.47135 * 174.99949 * 16 2 1 36 36 H 0.96997 * 120.00052 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 7 2.7683 -0.0883 -2.0732 6 7 3.2357 -0.7489 -3.2169 7 6 4.0324 -0.0760 -4.1284 8 6 4.4983 -0.7332 -5.2688 9 6 5.2902 -0.0214 -6.1511 10 6 5.5758 1.3158 -5.8467 11 6 6.4183 2.1199 -6.7573 12 7 6.6915 3.4064 -6.4628 13 8 6.8640 1.6209 -7.7722 14 7 5.0876 1.8591 -4.7377 15 7 4.3527 1.1968 -3.9199 16 6 2.0400 -0.7213 1.2492 17 6 1.6413 0.0571 2.4766 18 1 1.0800 0.9742 2.3757 19 6 1.9933 -0.4017 3.7283 20 7 2.6764 -1.5188 3.8511 21 14 1.4985 0.5627 5.2496 22 1 0.7412 1.7738 4.8434 23 1 0.6452 -0.2870 6.1186 24 1 2.7164 0.9683 5.9963 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.7714 -1.7445 -1.4014 29 1 3.0013 -1.6776 -3.3703 30 1 4.2471 -1.7666 -5.4567 31 1 5.6802 -0.4837 -7.0459 32 1 6.3356 3.8046 -5.6531 33 1 7.2439 3.9341 -7.0605 34 1 1.6053 -1.7198 1.2951 35 1 3.1263 -0.7995 1.2055 36 1 2.9243 -1.8413 4.7317 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766025243.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:51 Heat of formation + Delta-G solvation = 50.880897 kcal Electronic energy + Delta-G solvation = -19717.012927 eV Core-core repulsion = 16430.353355 eV Total energy + Delta-G solvation = -3286.659573 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.25665 -39.31091 -37.69993 -35.54288 -34.08592 -33.37294 -33.00270 -31.87200 -29.55387 -27.02808 -25.44892 -24.86321 -23.64356 -21.70880 -21.61496 -19.38225 -18.50399 -18.09938 -17.83233 -16.93536 -16.41573 -16.03190 -15.71746 -15.00394 -14.64763 -14.55066 -14.25823 -13.64573 -13.42995 -13.21202 -13.17468 -12.37118 -12.01446 -11.81033 -11.25793 -10.95907 -10.81376 -10.65815 -10.49382 -10.47861 -10.39768 -10.15639 -9.97043 -9.89584 -9.68811 -9.43079 -9.12860 -8.41319 -8.09490 -6.05884 -4.07804 0.39922 0.63755 2.28052 2.34391 2.67563 3.13292 3.29190 3.37411 3.41065 3.58479 3.83055 4.19480 4.42145 4.43016 4.50971 4.79462 5.02172 5.12915 5.31047 5.46426 5.62625 5.71543 5.89487 6.03900 6.19604 6.36812 6.47545 6.72637 6.76926 6.91832 6.92043 7.04414 7.56184 7.65226 7.92053 7.92162 8.16560 8.32649 8.61637 8.97682 9.56424 11.05622 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.029683 B = 0.002750 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.073541 B =10179.427625 C =10575.771996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.040 4.040 3 H 0.082 0.918 4 C 0.110 3.890 5 N -0.251 5.251 6 N -0.561 5.561 7 C 0.382 3.618 8 C -0.187 4.187 9 C -0.023 4.023 10 C -0.052 4.052 11 C 0.593 3.407 12 N -0.836 5.836 13 O -0.544 6.544 14 N -0.165 5.165 15 N -0.261 5.261 16 C 0.033 3.967 17 C -0.515 4.515 18 H 0.061 0.939 19 C 0.057 3.943 20 N -0.896 5.896 21 Si 0.892 3.108 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.284 1.284 25 H 0.075 0.925 26 H 0.035 0.965 27 H 0.049 0.951 28 H 0.102 0.898 29 H 0.394 0.606 30 H 0.154 0.846 31 H 0.161 0.839 32 H 0.413 0.587 33 H 0.406 0.594 34 H 0.021 0.979 35 H 0.019 0.981 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.581 2.046 -19.116 19.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.061 4.061 3 H 0.100 0.900 4 C -0.105 4.105 5 N -0.052 5.052 6 N -0.281 5.281 7 C 0.142 3.858 8 C -0.221 4.221 9 C -0.052 4.052 10 C -0.202 4.202 11 C 0.376 3.624 12 N -0.399 5.399 13 O -0.420 6.420 14 N -0.015 5.015 15 N -0.115 5.115 16 C -0.005 4.005 17 C -0.553 4.553 18 H 0.079 0.921 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.720 3.280 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.210 1.210 25 H 0.094 0.906 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.119 0.881 29 H 0.234 0.766 30 H 0.172 0.828 31 H 0.179 0.821 32 H 0.244 0.756 33 H 0.237 0.763 34 H 0.039 0.961 35 H 0.037 0.963 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.162 3.628 -18.841 19.446 hybrid contribution -0.420 -1.860 0.195 1.917 sum 2.742 1.768 -18.647 18.930 Atomic orbital electron populations 1.21680 0.94266 1.01436 1.01256 1.20400 0.95495 1.00253 0.89971 0.89963 1.26808 0.91536 0.97881 0.94259 1.74691 1.12389 1.23629 0.94514 1.45444 1.50627 1.12072 1.19967 1.19748 0.87784 0.91438 0.86846 1.21703 1.02994 1.02574 0.94865 1.22046 0.91918 0.92560 0.98640 1.22362 1.05077 0.94929 0.97820 1.17438 0.78973 0.81959 0.84020 1.43631 1.54870 1.12352 1.29061 1.90828 1.53114 1.71619 1.26482 1.73116 1.01131 1.28542 0.98670 1.73480 1.12144 1.04311 1.21531 1.19137 0.96524 0.95551 0.89300 1.21195 1.35079 1.08492 0.90567 0.92112 1.25009 0.95142 0.95065 0.99204 1.69965 1.38811 1.21207 1.23509 0.86530 0.78311 0.80102 0.83045 1.19597 1.21074 1.21046 0.90638 0.94553 0.93160 0.88082 0.76571 0.82821 0.82123 0.75609 0.76336 0.96102 0.96305 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.99 37.16 0.33 -1.79 16 2 C -0.04 -0.75 2.75 -91.77 -0.25 -1.01 16 3 H 0.08 1.65 8.11 -51.93 -0.42 1.23 16 4 C 0.11 1.77 9.66 -13.87 -0.13 1.63 16 5 N -0.25 -4.20 10.97 32.67 0.36 -3.84 16 6 N -0.56 -7.45 6.40 31.21 0.20 -7.25 16 7 C 0.38 5.13 7.68 -154.89 -1.19 3.94 16 8 C -0.19 -1.82 10.04 -39.04 -0.39 -2.21 16 9 C -0.02 -0.23 9.71 -38.87 -0.38 -0.61 16 10 C -0.05 -0.63 6.83 -82.83 -0.57 -1.19 16 11 C 0.59 6.76 8.08 -12.33 -0.10 6.66 16 12 N -0.84 -6.72 8.86 30.53 0.27 -6.45 16 13 O -0.54 -7.50 17.22 5.32 0.09 -7.41 16 14 N -0.17 -2.30 10.73 33.32 0.36 -1.95 16 15 N -0.26 -4.14 11.08 31.22 0.35 -3.80 16 16 C 0.03 0.79 4.43 -27.88 -0.12 0.66 16 17 C -0.51 -13.59 8.41 -34.43 -0.29 -13.88 16 18 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 19 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -25.90 13.29 55.43 0.74 -25.17 16 21 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H 0.07 1.34 6.95 -51.93 -0.36 0.98 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.10 1.35 8.00 -52.48 -0.42 0.93 16 29 H 0.39 3.79 8.63 -182.60 -1.58 2.21 16 30 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.16 1.29 7.71 -52.49 -0.40 0.89 16 32 H 0.41 2.99 8.17 -40.82 -0.33 2.66 16 33 H 0.41 2.36 8.93 -40.82 -0.36 2.00 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 323.92 15.07 4.88 4.88 Total: -1.00 -33.26 323.92 -6.47 -39.73 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.50 Total: 1.65 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -3.19 Total: -6.31 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 2.27 Total: -48.45 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: 0.09 Total: -7.41 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.26 -6.47 -39.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766025243.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.609 kcal (2) G-P(sol) polarization free energy of solvation -33.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds