Wall clock time and date at job start Mon Mar 30 2020 01:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46883 * 2 1 4 4 N 1.27939 * 120.00309 * 264.99787 * 3 2 1 5 5 Si 1.86807 * 120.00102 * 85.00134 * 3 2 1 6 6 H 1.48504 * 109.46909 * 59.99625 * 5 3 2 7 7 H 1.48495 * 109.47271 * 180.02562 * 5 3 2 8 8 H 1.48496 * 109.46832 * 299.99989 * 5 3 2 9 9 C 1.50697 * 109.46969 * 240.00080 * 2 1 3 10 10 O 1.21278 * 119.99762 * 120.00207 * 9 2 1 11 11 N 1.34768 * 120.00058 * 299.99726 * 9 2 1 12 12 C 1.46506 * 120.00237 * 180.02562 * 11 9 2 13 13 Si 1.86299 * 109.47415 * 94.99794 * 12 11 9 14 14 C 1.86299 * 109.47113 * 60.00220 * 13 12 11 15 15 C 1.86302 * 109.46974 * 300.00146 * 13 12 11 16 16 C 1.86801 * 109.47034 * 180.02562 * 13 12 11 17 17 C 1.38238 * 119.99838 * 90.00238 * 16 13 12 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 13 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00134 * 269.97918 * 16 13 12 22 22 H 1.09003 * 109.47148 * 59.99830 * 1 2 3 23 23 H 1.09001 * 109.46704 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47101 * 299.99716 * 1 2 3 25 25 H 1.09007 * 109.46904 * 119.99711 * 2 1 3 26 26 H 0.97003 * 120.00929 * 180.02562 * 4 3 2 27 27 H 0.97003 * 120.00199 * 359.97438 * 11 9 2 28 28 H 1.09005 * 109.46354 * 334.99569 * 12 11 9 29 29 H 1.08996 * 109.47357 * 215.00285 * 12 11 9 30 30 H 1.08994 * 109.47076 * 180.02562 * 14 13 12 31 31 H 1.09002 * 109.47122 * 300.00331 * 14 13 12 32 32 H 1.09004 * 109.47091 * 60.00033 * 14 13 12 33 33 H 1.08995 * 109.47073 * 299.99753 * 15 13 12 34 34 H 1.09002 * 109.47124 * 60.00396 * 15 13 12 35 35 H 1.09003 * 109.46730 * 179.97438 * 15 13 12 36 36 H 1.08005 * 120.00068 * 359.97415 * 17 16 13 37 37 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 38 38 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 39 39 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 40 40 H 1.07999 * 119.99968 * 359.97438 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3366 1.9918 -1.1037 5 14 2.2107 2.3485 1.6116 6 1 3.1660 1.6302 2.4930 7 1 2.7190 3.7173 1.3413 8 1 0.8884 2.4354 2.2816 9 6 2.0323 -0.7104 -1.2305 10 8 2.7296 -0.1210 -2.0287 11 7 1.7068 -2.0006 -1.4437 12 6 2.1955 -2.6915 -2.6397 13 14 3.7589 -3.6169 -2.2270 14 6 3.4070 -4.8649 -0.8893 15 6 5.0525 -2.4159 -1.6313 16 6 4.3824 -4.4971 -3.7521 17 6 5.2606 -3.8589 -4.6079 18 6 5.7224 -4.5104 -5.7363 19 6 5.3065 -5.8003 -6.0085 20 6 4.4241 -6.4365 -5.1556 21 6 3.9660 -5.7867 -4.0247 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 0.8901 26 1 2.6603 2.9062 -1.1038 27 1 1.1494 -2.4722 -0.8050 28 1 2.4013 -1.9612 -3.4223 29 1 1.4387 -3.3940 -2.9883 30 1 4.3218 -5.4060 -0.6476 31 1 3.0434 -4.3510 0.0005 32 1 2.6501 -5.5676 -1.2379 33 1 5.2584 -1.6858 -2.4140 34 1 4.6889 -1.9021 -0.7414 35 1 5.9671 -2.9575 -1.3894 36 1 5.5860 -2.8513 -4.3950 37 1 6.4083 -4.0117 -6.4051 38 1 5.6677 -6.3094 -6.8899 39 1 4.0957 -7.4426 -5.3706 40 1 3.2804 -6.2856 -3.3557 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776224795.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:42 Heat of formation + Delta-G solvation = -20.174077 kcal Electronic energy + Delta-G solvation = -19358.937349 eV Core-core repulsion = 16489.994902 eV Total energy + Delta-G solvation = -2868.942447 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.66590 -39.61160 -36.82350 -35.25084 -33.14847 -31.72220 -31.52494 -29.12770 -28.38914 -27.39900 -25.73899 -23.17852 -22.93161 -22.18341 -20.35470 -18.69071 -17.96390 -16.89997 -16.64306 -16.12592 -15.90364 -15.55149 -15.05995 -14.89241 -14.33807 -14.28207 -14.24282 -14.24082 -13.91179 -13.70923 -13.53964 -13.46975 -13.20345 -13.09177 -12.95298 -12.81109 -12.73011 -12.36660 -12.28920 -11.88244 -11.73557 -11.29143 -10.89479 -10.85713 -10.58169 -9.82618 -9.68802 -9.43983 -9.20410 0.42547 0.63462 0.92985 1.06841 1.37232 1.64581 1.74369 1.76754 1.82448 1.87480 2.08784 2.50189 2.63155 3.06578 3.42315 3.94489 4.12539 4.13901 4.18872 4.23491 4.30892 4.46364 4.61311 4.63225 4.67449 4.69404 4.77282 4.78061 4.86286 4.89204 5.02397 5.09213 5.12716 5.17696 5.24432 5.43262 5.60271 5.62992 5.66021 5.71767 5.73915 6.24435 6.68814 7.06625 7.58339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 C -0.017 4.017 4 N -0.574 5.574 5 Si 0.933 3.067 6 H -0.238 1.238 7 H -0.248 1.248 8 H -0.236 1.236 9 C 0.508 3.492 10 O -0.493 6.493 11 N -0.721 5.721 12 C -0.177 4.177 13 Si 1.058 2.942 14 C -0.446 4.446 15 C -0.440 4.440 16 C -0.374 4.374 17 C -0.086 4.086 18 C -0.133 4.133 19 C -0.110 4.110 20 C -0.134 4.134 21 C -0.089 4.089 22 H 0.066 0.934 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.112 0.888 26 H 0.332 0.668 27 H 0.399 0.601 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.596 -2.349 4.045 5.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.104 4.104 3 C -0.268 4.268 4 N -0.186 5.186 5 Si 0.748 3.252 6 H -0.160 1.160 7 H -0.171 1.171 8 H -0.159 1.159 9 C 0.292 3.708 10 O -0.365 6.365 11 N -0.374 5.374 12 C -0.348 4.348 13 Si 1.248 2.752 14 C -0.554 4.554 15 C -0.548 4.548 16 C -0.416 4.416 17 C -0.104 4.104 18 C -0.151 4.151 19 C -0.128 4.128 20 C -0.152 4.152 21 C -0.107 4.107 22 H 0.085 0.915 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.129 0.871 26 H 0.149 0.851 27 H 0.233 0.767 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.991 -1.741 3.121 4.091 hybrid contribution -0.038 0.081 0.340 0.351 sum -2.029 -1.660 3.461 4.342 Atomic orbital electron populations 1.21722 0.91383 1.03142 1.03627 1.20626 0.98136 0.93384 0.98287 1.29794 0.95932 0.98769 1.02263 1.68415 1.05149 1.14127 1.30892 0.85774 0.82792 0.79835 0.76757 1.16029 1.17123 1.15878 1.20303 0.81359 0.81373 0.87761 1.90766 1.35770 1.64480 1.45460 1.45561 1.54696 1.12070 1.25120 1.26314 1.13107 1.04002 0.91368 0.78456 0.66690 0.65654 0.64447 1.26092 1.05300 1.11484 1.12499 1.26053 1.11661 1.10789 1.06322 1.27272 1.02210 1.00395 1.11760 1.21130 0.95935 0.99446 0.93894 1.21285 1.00549 0.95340 0.97915 1.21232 0.97186 0.95159 0.99195 1.21264 0.98379 1.00032 0.95533 1.21087 0.98481 0.94741 0.96427 0.91480 0.91239 0.90982 0.87057 0.85109 0.76699 0.88695 0.90215 0.90876 0.90914 0.91068 0.90807 0.91383 0.91454 0.86171 0.86316 0.86293 0.86342 0.86262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.38 9.02 37.16 0.34 0.72 16 2 C -0.08 0.09 2.65 -92.92 -0.25 -0.15 16 3 C -0.02 -0.01 4.75 -13.90 -0.07 -0.07 16 4 N -0.57 -1.66 11.22 56.23 0.63 -1.03 16 5 Si 0.93 -1.22 29.29 -169.99 -4.98 -6.20 16 6 H -0.24 0.22 7.11 56.52 0.40 0.62 16 7 H -0.25 0.03 7.11 56.52 0.40 0.43 16 8 H -0.24 0.35 7.11 56.52 0.40 0.75 16 9 C 0.51 0.70 6.96 -10.99 -0.08 0.62 16 10 O -0.49 -2.70 13.83 5.56 0.08 -2.63 16 11 N -0.72 0.98 4.58 -8.53 -0.04 0.94 16 12 C -0.18 0.15 5.31 59.85 0.32 0.47 16 13 Si 1.06 -1.71 11.36 -169.99 -1.93 -3.64 16 14 C -0.45 1.05 8.53 101.05 0.86 1.91 16 15 C -0.44 -0.24 8.53 101.05 0.86 0.62 16 16 C -0.37 -0.28 4.59 -39.58 -0.18 -0.46 16 17 C -0.09 -0.15 9.29 -39.58 -0.37 -0.52 16 18 C -0.13 -0.26 10.05 -39.58 -0.40 -0.66 16 19 C -0.11 -0.19 10.05 -39.58 -0.40 -0.59 16 20 C -0.13 -0.18 10.05 -39.58 -0.40 -0.58 16 21 C -0.09 -0.07 9.29 -39.58 -0.37 -0.44 16 22 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 23 H 0.07 -0.32 7.56 -51.93 -0.39 -0.71 16 24 H 0.07 -0.28 7.95 -51.93 -0.41 -0.69 16 25 H 0.11 -0.47 7.85 -51.93 -0.41 -0.88 16 26 H 0.33 0.43 8.23 -40.82 -0.34 0.10 16 27 H 0.40 -1.78 8.25 -40.82 -0.34 -2.11 16 28 H 0.09 0.16 7.10 -51.93 -0.37 -0.21 16 29 H 0.08 -0.19 7.96 -51.93 -0.41 -0.60 16 30 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 31 H 0.07 -0.22 7.96 -51.93 -0.41 -0.63 16 32 H 0.07 -0.21 7.69 -51.93 -0.40 -0.61 16 33 H 0.07 0.14 7.68 -51.93 -0.40 -0.26 16 34 H 0.07 0.06 7.96 -51.93 -0.41 -0.35 16 35 H 0.07 0.02 7.96 -51.93 -0.41 -0.40 16 36 H 0.12 0.08 7.42 -52.48 -0.39 -0.31 16 37 H 0.12 0.05 8.06 -52.49 -0.42 -0.37 16 38 H 0.12 0.01 8.06 -52.49 -0.42 -0.42 16 39 H 0.12 -0.04 8.06 -52.49 -0.42 -0.47 16 40 H 0.12 -0.18 7.43 -52.49 -0.39 -0.57 16 LS Contribution 339.97 15.07 5.12 5.12 Total: 0.00 -7.64 339.97 -7.63 -15.26 By element: Atomic # 1 Polarization: -2.33 SS G_CDS: -6.39 Total: -8.71 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -0.12 Total: 0.88 kcal Atomic # 7 Polarization: -0.69 SS G_CDS: 0.59 Total: -0.09 kcal Atomic # 8 Polarization: -2.70 SS G_CDS: 0.08 Total: -2.63 kcal Atomic # 14 Polarization: -2.92 SS G_CDS: -6.91 Total: -9.83 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -7.64 -7.63 -15.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776224795.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.910 kcal (2) G-P(sol) polarization free energy of solvation -7.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds