Wall clock time and date at job start Mon Mar 30 2020 01:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46883 * 2 1 4 4 N 1.27939 * 120.00309 * 264.99787 * 3 2 1 5 5 Si 1.86807 * 120.00102 * 85.00134 * 3 2 1 6 6 H 1.48504 * 109.46909 * 59.99625 * 5 3 2 7 7 H 1.48495 * 109.47271 * 180.02562 * 5 3 2 8 8 H 1.48496 * 109.46832 * 299.99989 * 5 3 2 9 9 C 1.50697 * 109.46969 * 240.00080 * 2 1 3 10 10 O 1.21278 * 119.99762 * 120.00207 * 9 2 1 11 11 N 1.34768 * 120.00058 * 299.99726 * 9 2 1 12 12 C 1.46506 * 120.00237 * 180.02562 * 11 9 2 13 13 Si 1.86299 * 109.47415 * 94.99794 * 12 11 9 14 14 C 1.86299 * 109.47113 * 60.00220 * 13 12 11 15 15 C 1.86302 * 109.46974 * 300.00146 * 13 12 11 16 16 C 1.86801 * 109.47034 * 180.02562 * 13 12 11 17 17 C 1.38238 * 119.99838 * 90.00238 * 16 13 12 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 13 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00134 * 269.97918 * 16 13 12 22 22 H 1.09003 * 109.47148 * 59.99830 * 1 2 3 23 23 H 1.09001 * 109.46704 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47101 * 299.99716 * 1 2 3 25 25 H 1.09007 * 109.46904 * 119.99711 * 2 1 3 26 26 H 0.97003 * 120.00929 * 180.02562 * 4 3 2 27 27 H 0.97003 * 120.00199 * 359.97438 * 11 9 2 28 28 H 1.09005 * 109.46354 * 334.99569 * 12 11 9 29 29 H 1.08996 * 109.47357 * 215.00285 * 12 11 9 30 30 H 1.08994 * 109.47076 * 180.02562 * 14 13 12 31 31 H 1.09002 * 109.47122 * 300.00331 * 14 13 12 32 32 H 1.09004 * 109.47091 * 60.00033 * 14 13 12 33 33 H 1.08995 * 109.47073 * 299.99753 * 15 13 12 34 34 H 1.09002 * 109.47124 * 60.00396 * 15 13 12 35 35 H 1.09003 * 109.46730 * 179.97438 * 15 13 12 36 36 H 1.08005 * 120.00068 * 359.97415 * 17 16 13 37 37 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 38 38 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 39 39 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 40 40 H 1.07999 * 119.99968 * 359.97438 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3366 1.9918 -1.1037 5 14 2.2107 2.3485 1.6116 6 1 3.1660 1.6302 2.4930 7 1 2.7190 3.7173 1.3413 8 1 0.8884 2.4354 2.2816 9 6 2.0323 -0.7104 -1.2305 10 8 2.7296 -0.1210 -2.0287 11 7 1.7068 -2.0006 -1.4437 12 6 2.1955 -2.6915 -2.6397 13 14 3.7589 -3.6169 -2.2270 14 6 3.4070 -4.8649 -0.8893 15 6 5.0525 -2.4159 -1.6313 16 6 4.3824 -4.4971 -3.7521 17 6 5.2606 -3.8589 -4.6079 18 6 5.7224 -4.5104 -5.7363 19 6 5.3065 -5.8003 -6.0085 20 6 4.4241 -6.4365 -5.1556 21 6 3.9660 -5.7867 -4.0247 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 0.8901 26 1 2.6603 2.9062 -1.1038 27 1 1.1494 -2.4722 -0.8050 28 1 2.4013 -1.9612 -3.4223 29 1 1.4387 -3.3940 -2.9883 30 1 4.3218 -5.4060 -0.6476 31 1 3.0434 -4.3510 0.0005 32 1 2.6501 -5.5676 -1.2379 33 1 5.2584 -1.6858 -2.4140 34 1 4.6889 -1.9021 -0.7414 35 1 5.9671 -2.9575 -1.3894 36 1 5.5860 -2.8513 -4.3950 37 1 6.4083 -4.0117 -6.4051 38 1 5.6677 -6.3094 -6.8899 39 1 4.0957 -7.4426 -5.3706 40 1 3.2804 -6.2856 -3.3557 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776224795.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:41 Heat of formation + Delta-G solvation = -13.560673 kcal Electronic energy + Delta-G solvation = -19358.650571 eV Core-core repulsion = 16489.994902 eV Total energy + Delta-G solvation = -2868.655668 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.70092 -39.65663 -36.82284 -35.31870 -33.08203 -31.77523 -31.57128 -29.03713 -28.32005 -27.33861 -25.62053 -23.23985 -22.98764 -22.21299 -20.34503 -18.67891 -18.00176 -16.83437 -16.69757 -16.11179 -15.93534 -15.62111 -14.99416 -14.79745 -14.31677 -14.28508 -14.22172 -14.15545 -13.86286 -13.68121 -13.52715 -13.44852 -13.13816 -12.98799 -12.88883 -12.80079 -12.57029 -12.23664 -12.21679 -11.91716 -11.73702 -11.29010 -10.88983 -10.79324 -10.63854 -9.87935 -9.77395 -9.45904 -9.19468 0.36821 0.54753 0.97572 1.13566 1.47678 1.68970 1.80357 1.84485 1.90152 2.00985 2.09507 2.56388 2.70268 2.99449 3.48797 4.10052 4.11928 4.19547 4.27060 4.28498 4.36302 4.55921 4.60967 4.71569 4.76830 4.79815 4.85316 4.92820 4.96060 5.00110 5.07482 5.11756 5.15192 5.19537 5.37787 5.53614 5.58602 5.61972 5.65503 5.67649 5.73050 6.19843 6.80679 7.08744 7.61388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 C -0.022 4.022 4 N -0.621 5.621 5 Si 0.979 3.021 6 H -0.237 1.237 7 H -0.273 1.273 8 H -0.224 1.224 9 C 0.499 3.501 10 O -0.544 6.544 11 N -0.707 5.707 12 C -0.188 4.188 13 Si 1.120 2.880 14 C -0.442 4.442 15 C -0.459 4.459 16 C -0.387 4.387 17 C -0.108 4.108 18 C -0.153 4.153 19 C -0.126 4.126 20 C -0.147 4.147 21 C -0.097 4.097 22 H 0.042 0.958 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.149 0.851 26 H 0.331 0.669 27 H 0.418 0.582 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.135 0.865 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.179 -4.168 6.194 8.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 C -0.270 4.270 4 N -0.234 5.234 5 Si 0.794 3.206 6 H -0.160 1.160 7 H -0.198 1.198 8 H -0.146 1.146 9 C 0.284 3.716 10 O -0.420 6.420 11 N -0.362 5.362 12 C -0.358 4.358 13 Si 1.305 2.695 14 C -0.551 4.551 15 C -0.565 4.565 16 C -0.427 4.427 17 C -0.126 4.126 18 C -0.171 4.171 19 C -0.144 4.144 20 C -0.165 4.165 21 C -0.114 4.114 22 H 0.061 0.939 23 H 0.112 0.888 24 H 0.108 0.892 25 H 0.166 0.834 26 H 0.148 0.852 27 H 0.255 0.745 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.137 0.863 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.153 0.847 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.586 -3.581 5.265 7.308 hybrid contribution 0.485 0.661 -0.374 0.901 sum -3.101 -2.920 4.890 6.486 Atomic orbital electron populations 1.21757 0.89917 1.04670 1.03293 1.20906 0.99304 0.92489 0.98418 1.30460 0.94022 0.99623 1.02922 1.68518 1.07491 1.14594 1.32770 0.85132 0.82970 0.77724 0.74749 1.15951 1.19762 1.14568 1.20852 0.80705 0.81934 0.88076 1.90754 1.38173 1.65754 1.47291 1.45462 1.54166 1.11414 1.25134 1.26454 1.14795 1.03565 0.90954 0.77576 0.64271 0.64288 0.63365 1.26002 1.05874 1.11147 1.12125 1.26357 1.13239 1.11302 1.05580 1.27834 1.01610 1.00826 1.12476 1.21334 0.96950 0.99789 0.94564 1.21505 1.01189 0.95953 0.98404 1.21479 0.97707 0.95213 1.00006 1.21606 0.98206 1.00932 0.95721 1.21482 0.98631 0.94659 0.96657 0.93864 0.88820 0.89243 0.83358 0.85240 0.74493 0.91730 0.88067 0.91045 0.89501 0.89398 0.93142 0.91783 0.91467 0.86337 0.85824 0.85207 0.84665 0.83466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.94 9.02 71.98 0.65 1.59 16 2 C -0.09 0.27 2.65 -12.29 -0.03 0.23 16 3 C -0.02 -0.03 4.75 88.67 0.42 0.39 16 4 N -0.62 -5.05 11.22 24.11 0.27 -4.78 16 5 Si 0.98 -3.11 29.29 68.60 2.01 -1.10 16 6 H -0.24 0.78 7.11 99.48 0.71 1.48 16 7 H -0.27 -0.19 7.11 99.48 0.71 0.52 16 8 H -0.22 1.14 7.11 99.48 0.71 1.85 16 9 C 0.50 1.66 6.96 87.66 0.61 2.27 16 10 O -0.54 -7.34 13.83 -3.02 -0.04 -7.39 16 11 N -0.71 2.40 4.58 -299.29 -1.37 1.02 16 12 C -0.19 0.31 5.31 127.77 0.68 0.99 16 13 Si 1.12 -3.84 11.36 68.60 0.78 -3.06 16 14 C -0.44 3.27 8.53 113.37 0.97 4.24 16 15 C -0.46 -1.29 8.53 113.37 0.97 -0.32 16 16 C -0.39 -0.74 4.59 22.27 0.10 -0.64 16 17 C -0.11 -0.60 9.29 22.27 0.21 -0.39 16 18 C -0.15 -0.88 10.05 22.27 0.22 -0.66 16 19 C -0.13 -0.55 10.05 22.27 0.22 -0.33 16 20 C -0.15 -0.37 10.05 22.27 0.22 -0.15 16 21 C -0.10 -0.07 9.29 22.27 0.21 0.13 16 22 H 0.04 -0.06 8.14 -2.39 -0.02 -0.08 16 23 H 0.09 -1.10 7.56 -2.39 -0.02 -1.12 16 24 H 0.09 -0.90 7.95 -2.39 -0.02 -0.92 16 25 H 0.15 -1.61 7.85 -2.38 -0.02 -1.63 16 26 H 0.33 1.85 8.23 -92.71 -0.76 1.08 16 27 H 0.42 -4.69 8.25 -92.71 -0.76 -5.46 16 28 H 0.06 0.35 7.10 -2.38 -0.02 0.33 16 29 H 0.10 -0.62 7.96 -2.39 -0.02 -0.64 16 30 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 31 H 0.09 -0.83 7.96 -2.39 -0.02 -0.85 16 32 H 0.09 -0.87 7.69 -2.38 -0.02 -0.89 16 33 H 0.05 0.37 7.68 -2.39 -0.02 0.35 16 34 H 0.06 0.20 7.96 -2.39 -0.02 0.18 16 35 H 0.07 0.14 7.96 -2.39 -0.02 0.12 16 36 H 0.12 0.53 7.42 -2.91 -0.02 0.51 16 37 H 0.12 0.40 8.06 -2.91 -0.02 0.38 16 38 H 0.13 0.12 8.06 -2.91 -0.02 0.10 16 39 H 0.14 -0.22 8.06 -2.91 -0.02 -0.25 16 40 H 0.15 -0.81 7.43 -2.91 -0.02 -0.84 16 Total: 0.00 -21.49 339.97 7.35 -14.14 By element: Atomic # 1 Polarization: -6.45 SS G_CDS: 0.26 Total: -6.19 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 5.45 Total: 7.36 kcal Atomic # 7 Polarization: -2.66 SS G_CDS: -1.10 Total: -3.76 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.04 Total: -7.39 kcal Atomic # 14 Polarization: -6.96 SS G_CDS: 2.79 Total: -4.17 kcal Total: -21.49 7.35 -14.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776224795.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.579 kcal (2) G-P(sol) polarization free energy of solvation -21.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds