Wall clock time and date at job start Mon Mar 30 2020 01:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47552 * 2 1 4 4 C 1.50702 * 109.46876 * 239.99815 * 2 1 3 5 5 H 1.07998 * 120.00581 * 239.99850 * 4 2 1 6 6 C 1.37878 * 119.99841 * 60.00272 * 4 2 1 7 7 N 1.31514 * 119.99963 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99964 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46841 * 90.00573 * 8 6 4 10 10 H 1.48500 * 109.47227 * 209.99869 * 8 6 4 11 11 H 1.48498 * 109.47418 * 330.00703 * 8 6 4 12 12 N 1.46500 * 109.47104 * 120.00543 * 2 1 3 13 13 C 1.34781 * 119.99852 * 274.99786 * 12 2 1 14 14 O 1.21287 * 119.99540 * 359.97438 * 13 12 2 15 15 C 1.50694 * 120.00193 * 179.72534 * 13 12 2 16 16 F 1.39906 * 109.46825 * 275.65099 * 15 13 12 17 17 F 1.39898 * 109.47359 * 35.64984 * 15 13 12 18 18 C 1.52996 * 109.47358 * 155.65285 * 15 13 12 19 19 O 1.42906 * 110.01801 * 305.92839 * 18 15 13 20 20 C 1.54268 * 110.03442 * 184.53170 * 18 15 13 21 21 C 1.54961 * 104.16076 * 217.13649 * 20 18 15 22 22 C 1.54887 * 102.78095 * 37.88773 * 21 20 18 23 23 C 1.53872 * 110.03252 * 67.31662 * 18 15 13 24 24 H 1.08997 * 109.46560 * 59.99689 * 1 2 3 25 25 H 1.08994 * 109.47552 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46704 * 300.00007 * 1 2 3 27 27 H 0.97003 * 119.99643 * 179.97438 * 7 6 4 28 28 H 0.97000 * 120.00543 * 94.99487 * 12 2 1 29 29 H 0.96703 * 113.99567 * 305.56780 * 19 18 15 30 30 H 1.08993 * 110.48651 * 335.78641 * 20 18 15 31 31 H 1.09004 * 110.48309 * 98.42530 * 20 18 15 32 32 H 1.09008 * 110.71952 * 279.57306 * 21 20 18 33 33 H 1.08999 * 110.76517 * 156.22953 * 21 20 18 34 34 H 1.08992 * 110.48933 * 203.40407 * 22 21 20 35 35 H 1.09004 * 110.48342 * 80.75746 * 22 21 20 36 36 H 1.09004 * 110.03484 * 238.57182 * 23 18 15 37 37 H 1.09001 * 110.03290 * 359.97438 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.3445 -2.1615 -4.4124 10 1 2.4872 -0.1403 -5.1121 11 1 3.6306 -1.7568 -3.7120 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3572 14 8 1.8591 1.1585 2.4115 15 6 2.6436 -0.7303 3.5891 16 9 1.5726 -1.3726 4.2198 17 9 3.6060 -1.6778 3.2242 18 6 3.2660 0.2854 4.5491 19 8 4.2709 1.0447 3.8739 20 6 3.8799 -0.4422 5.7630 21 6 3.5856 0.4994 6.9580 22 6 2.1687 1.0336 6.6324 23 6 2.1787 1.2236 5.1015 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.7096 1.1618 -3.4844 28 1 2.2490 -1.6319 1.1526 29 1 4.9514 0.5055 3.4481 30 1 3.3989 -1.4089 5.9117 31 1 4.9547 -0.5664 5.6298 32 1 4.3075 1.3154 6.9930 33 1 3.5830 -0.0558 7.8960 34 1 1.9954 1.9857 7.1339 35 1 1.4108 0.3055 6.9214 36 1 2.4179 2.2582 4.8552 37 1 1.2076 0.9556 4.6852 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788301921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:57 Heat of formation + Delta-G solvation = -215.115093 kcal Electronic energy + Delta-G solvation = -23197.331021 eV Core-core repulsion = 19416.155059 eV Total energy + Delta-G solvation = -3781.175962 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.48484 -48.44674 -40.98218 -39.68216 -36.90021 -36.05014 -34.46127 -31.57349 -30.42479 -29.80614 -27.43258 -26.81626 -23.46073 -22.09826 -21.59310 -21.20647 -19.83924 -19.30991 -18.78078 -18.07071 -17.31411 -16.89641 -16.56004 -16.52663 -15.85285 -15.41408 -15.26190 -15.12540 -14.81747 -14.61431 -14.50445 -14.19246 -13.84043 -13.73493 -13.63784 -13.10119 -12.95048 -12.79132 -12.77552 -12.35836 -12.21266 -12.15874 -12.11072 -11.84968 -11.55254 -11.38315 -11.19557 -10.76321 -10.63950 -10.01565 -8.22341 -6.40570 1.14799 1.44051 1.44726 1.54932 1.65703 2.34377 2.40697 2.72272 2.96846 3.08232 3.21670 3.42906 3.58691 3.76543 4.17513 4.37218 4.38514 4.52506 4.64655 4.69241 4.81506 4.83180 4.97695 4.99649 5.04534 5.16276 5.20290 5.26872 5.41911 5.42653 5.56566 5.74975 5.99618 6.49005 6.53877 6.64058 7.02121 7.32084 8.84049 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.035201 B = 0.004780 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.235146 B = 5856.325114 C = 6044.812759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.270 3.730 3 H 0.009 0.991 4 C -0.552 4.552 5 H 0.072 0.928 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.974 3.026 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.264 1.264 12 N -0.688 5.688 13 C 0.469 3.531 14 O -0.532 6.532 15 C 0.260 3.740 16 F -0.176 7.176 17 F -0.181 7.181 18 C 0.113 3.887 19 O -0.542 6.542 20 C -0.144 4.144 21 C -0.111 4.111 22 C -0.121 4.121 23 C -0.106 4.106 24 H 0.073 0.927 25 H 0.040 0.960 26 H 0.015 0.985 27 H 0.267 0.733 28 H 0.405 0.595 29 H 0.389 0.611 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.606 -4.909 17.031 18.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.168 3.832 3 H 0.026 0.974 4 C -0.590 4.590 5 H 0.090 0.910 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.799 3.201 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.189 1.189 12 N -0.337 5.337 13 C 0.250 3.750 14 O -0.409 6.409 15 C 0.220 3.780 16 F -0.157 7.157 17 F -0.162 7.162 18 C 0.071 3.929 19 O -0.349 6.349 20 C -0.182 4.182 21 C -0.148 4.148 22 C -0.159 4.159 23 C -0.144 4.144 24 H 0.091 0.909 25 H 0.059 0.941 26 H 0.034 0.966 27 H 0.077 0.923 28 H 0.241 0.759 29 H 0.238 0.762 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.948 -3.488 17.110 18.149 hybrid contribution 0.339 -1.213 -1.551 1.998 sum 5.288 -4.701 15.559 17.092 Atomic orbital electron populations 1.21924 0.97773 0.99712 1.00035 1.18535 0.91450 0.92206 0.81054 0.97352 1.21479 1.33099 1.13768 0.90640 0.90959 1.25777 0.94703 0.95503 1.02240 1.70034 1.36690 1.23668 1.24851 0.85308 0.78974 0.78053 0.77801 1.19605 1.20985 1.18876 1.46424 1.63213 1.14359 1.09663 1.21005 0.80520 0.88039 0.85474 1.90732 1.50033 1.15868 1.84300 1.22431 0.78323 0.85189 0.92074 1.93040 1.56649 1.83030 1.82935 1.93034 1.63534 1.67118 1.92549 1.22805 0.90250 0.90065 0.89822 1.86718 1.38821 1.36628 1.72733 1.23107 1.02415 0.99341 0.93301 1.22456 0.96190 0.98673 0.97477 1.22451 0.98405 1.02643 0.92368 1.22105 0.95705 0.99448 0.97116 0.90868 0.94061 0.96618 0.92329 0.75938 0.76158 0.89682 0.88463 0.90619 0.88530 0.89611 0.90365 0.90971 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.88 9.26 71.98 0.67 -6.22 16 2 C 0.27 14.05 2.56 44.25 0.11 14.16 16 3 H 0.01 0.52 7.58 -2.39 -0.02 0.50 16 4 C -0.55 -29.22 8.73 25.60 0.22 -29.00 16 5 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 6 C 0.02 0.98 5.30 84.66 0.45 1.43 16 7 N -0.91 -51.83 11.32 21.45 0.24 -51.58 16 8 Si 0.97 41.66 29.54 68.60 2.03 43.69 16 9 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 12 N -0.69 -29.69 5.00 -446.08 -2.23 -31.92 16 13 C 0.47 19.28 6.66 87.65 0.58 19.87 16 14 O -0.53 -25.35 13.88 6.30 0.09 -25.26 16 15 C 0.26 8.24 1.26 29.84 0.04 8.27 16 16 F -0.18 -5.43 15.79 44.97 0.71 -4.72 16 17 F -0.18 -5.19 15.92 44.97 0.72 -4.47 16 18 C 0.11 3.13 0.58 -10.07 -0.01 3.12 16 19 O -0.54 -16.02 12.11 -139.63 -1.69 -17.71 16 20 C -0.14 -2.80 5.72 31.69 0.18 -2.61 16 21 C -0.11 -1.79 6.91 31.91 0.22 -1.57 16 22 C -0.12 -2.36 6.83 31.67 0.22 -2.14 16 23 C -0.11 -3.03 4.70 31.32 0.15 -2.88 16 24 H 0.07 4.03 6.07 -2.39 -0.01 4.02 16 25 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.27 14.31 8.31 -92.71 -0.77 13.53 16 28 H 0.41 15.48 8.11 -92.71 -0.75 14.73 16 29 H 0.39 8.95 8.82 -74.06 -0.65 8.30 16 30 H 0.08 1.58 7.52 -2.39 -0.02 1.57 16 31 H 0.10 1.59 8.07 -2.38 -0.02 1.57 16 32 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 2.31 7.96 -2.38 -0.02 2.29 16 37 H 0.06 1.97 6.52 -2.39 -0.02 1.95 16 Total: -1.00 -64.18 308.93 2.40 -61.79 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: -0.30 Total: 27.76 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 2.83 Total: 2.43 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -1.99 Total: -83.50 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -1.60 Total: -42.97 kcal Atomic # 9 Polarization: -10.61 SS G_CDS: 1.43 Total: -9.19 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -64.18 2.40 -61.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788301921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.327 kcal (2) G-P(sol) polarization free energy of solvation -64.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds