Wall clock time and date at job start Mon Mar 30 2020 01:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46540 * 2 1 4 4 C 1.50696 * 109.47570 * 119.99622 * 2 1 3 5 5 H 1.08000 * 119.99963 * 119.99908 * 4 2 1 6 6 C 1.37876 * 120.00075 * 300.00411 * 4 2 1 7 7 N 1.31513 * 119.99835 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00076 * 359.97438 * 6 4 2 9 9 H 1.48494 * 109.47625 * 89.99928 * 8 6 4 10 10 H 1.48508 * 109.47178 * 209.99967 * 8 6 4 11 11 H 1.48502 * 109.47226 * 329.99623 * 8 6 4 12 12 N 1.46500 * 109.47210 * 240.00116 * 2 1 3 13 13 C 1.34785 * 119.99952 * 84.99451 * 12 2 1 14 14 O 1.21277 * 119.99968 * 0.02562 * 13 12 2 15 15 C 1.50692 * 119.99624 * 180.02562 * 13 12 2 16 16 F 1.39902 * 109.47422 * 275.47645 * 15 13 12 17 17 F 1.39900 * 109.47650 * 35.47831 * 15 13 12 18 18 C 1.53005 * 109.47058 * 155.47693 * 15 13 12 19 19 O 1.42899 * 110.01395 * 305.92646 * 18 15 13 20 20 C 1.54268 * 110.03405 * 184.53237 * 18 15 13 21 21 C 1.54964 * 104.15782 * 217.13729 * 20 18 15 22 22 C 1.54885 * 102.77859 * 37.88695 * 21 20 18 23 23 C 1.53878 * 110.03045 * 67.31260 * 18 15 13 24 24 H 1.09005 * 109.47489 * 299.99600 * 1 2 3 25 25 H 1.08999 * 109.46779 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47865 * 60.00126 * 1 2 3 27 27 H 0.97000 * 119.99692 * 179.97438 * 7 6 4 28 28 H 0.96998 * 119.99800 * 264.99899 * 12 2 1 29 29 H 0.96698 * 114.00222 * 305.56373 * 19 18 15 30 30 H 1.08995 * 110.48465 * 335.78224 * 20 18 15 31 31 H 1.09001 * 110.48368 * 98.42664 * 20 18 15 32 32 H 1.09008 * 110.71894 * 279.57335 * 21 20 18 33 33 H 1.08996 * 110.76159 * 156.22738 * 21 20 18 34 34 H 1.09001 * 110.48484 * 203.40639 * 22 21 20 35 35 H 1.09003 * 110.48385 * 80.76459 * 22 21 20 36 36 H 1.09003 * 110.03031 * 238.56966 * 23 18 15 37 37 H 1.08996 * 110.03383 * 0.02562 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2392 2.4827 7 7 2.1374 -0.8594 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8745 2.6993 10 1 0.9772 1.9954 3.9071 11 1 0.8491 2.1774 1.4923 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8589 1.1586 -2.4116 15 6 2.6487 -0.7287 -3.5877 16 9 4.0477 -0.7387 -3.5827 17 9 2.1731 -2.0444 -3.5932 18 6 2.1485 -0.0004 -4.8369 19 8 0.7271 0.1376 -4.7862 20 6 2.5590 -0.7800 -6.1032 21 6 2.9024 0.3250 -7.1339 22 6 3.5993 1.4003 -6.2639 23 6 2.8093 1.3855 -4.9390 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3635 0.5138 -0.8899 27 1 1.9034 -0.5278 4.4375 28 1 2.2490 -1.6317 -1.1526 29 1 0.2553 -0.6966 -4.6572 30 1 3.4330 -1.3997 -5.9030 31 1 1.7302 -1.3915 -6.4600 32 1 1.9954 0.7239 -7.5882 33 1 3.5823 -0.0555 -7.8961 34 1 3.5296 2.3790 -6.7387 35 1 4.6416 1.1332 -6.0896 36 1 2.0456 2.1632 -4.9509 37 1 3.4866 1.5390 -4.0990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788301922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:59 Heat of formation + Delta-G solvation = -185.934389 kcal Electronic energy + Delta-G solvation = -23281.791060 eV Core-core repulsion = 19501.880468 eV Total energy + Delta-G solvation = -3779.910592 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.24679 -47.21819 -39.66262 -38.51708 -35.26084 -35.06778 -32.51381 -30.45353 -29.44120 -28.92228 -25.81308 -25.19210 -21.91579 -21.18282 -20.22156 -19.89092 -18.37466 -18.14342 -17.56995 -16.47487 -16.09847 -15.66103 -15.46889 -15.06697 -14.37807 -14.16336 -13.86041 -13.77481 -13.60986 -13.44904 -13.03454 -12.92707 -12.80837 -12.62874 -12.27076 -11.96919 -11.83549 -11.44847 -11.35624 -11.21510 -10.88401 -10.87782 -10.71110 -10.36368 -10.25727 -9.78058 -9.33574 -9.28467 -8.84519 -8.38817 -6.26446 -4.30369 2.60554 3.00022 3.19333 3.31687 3.35031 3.55182 3.85617 4.04727 4.25991 4.31459 4.38237 4.77534 4.84563 4.96965 5.07679 5.27402 5.28324 5.41851 5.51208 5.61293 5.74032 5.85018 5.94443 6.14736 6.20917 6.25419 6.27991 6.44578 6.72532 6.97868 7.09577 7.37507 7.39047 7.89196 8.34335 8.45691 8.72529 9.32381 10.85540 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.034124 B = 0.005123 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.329287 B = 5463.837317 C = 5663.312362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.236 3.764 3 H 0.052 0.948 4 C -0.539 4.539 5 H 0.082 0.918 6 C 0.080 3.920 7 N -0.889 5.889 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.262 1.262 12 N -0.680 5.680 13 C 0.477 3.523 14 O -0.503 6.503 15 C 0.249 3.751 16 F -0.176 7.176 17 F -0.190 7.190 18 C 0.116 3.884 19 O -0.525 6.525 20 C -0.150 4.150 21 C -0.117 4.117 22 C -0.127 4.127 23 C -0.100 4.100 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.038 0.962 27 H 0.269 0.731 28 H 0.401 0.599 29 H 0.377 0.623 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.369 0.082 -19.201 19.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.133 3.867 3 H 0.070 0.930 4 C -0.577 4.577 5 H 0.100 0.900 6 C -0.124 4.124 7 N -0.525 5.525 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.187 1.187 12 N -0.328 5.328 13 C 0.256 3.744 14 O -0.378 6.378 15 C 0.208 3.792 16 F -0.157 7.157 17 F -0.171 7.171 18 C 0.073 3.927 19 O -0.331 6.331 20 C -0.187 4.187 21 C -0.154 4.154 22 C -0.164 4.164 23 C -0.138 4.138 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.235 0.765 29 H 0.225 0.775 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.330 1.525 -19.058 19.122 hybrid contribution -0.488 -0.717 0.536 1.020 sum -0.159 0.808 -18.522 18.540 Atomic orbital electron populations 1.22454 0.98753 1.01171 0.99646 1.19254 0.90521 0.94692 0.82188 0.93006 1.20988 1.33674 1.14671 0.88372 0.90043 1.24813 0.95421 0.96716 0.95419 1.69861 1.44605 1.39983 0.98090 0.86877 0.80561 0.83496 0.77588 1.20160 1.21981 1.18652 1.46277 1.63013 1.14294 1.09202 1.20350 0.81186 0.88279 0.84608 1.90742 1.49114 1.14430 1.83511 1.22614 0.77092 0.80082 0.99367 1.93049 1.28814 1.96395 1.97485 1.93019 1.87878 1.38631 1.97595 1.22613 0.83143 0.97250 0.89714 1.86732 1.15320 1.35978 1.95023 1.23081 1.02580 0.98342 0.94741 1.22433 1.00652 0.95331 0.97021 1.22443 0.99419 0.99415 0.95143 1.22087 0.99455 0.93861 0.98372 0.93130 0.92580 0.94265 0.92145 0.76466 0.77542 0.90150 0.90084 0.90890 0.91114 0.90914 0.91156 0.88987 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 8.96 37.16 0.33 -3.24 16 2 C 0.24 5.60 2.15 -69.09 -0.15 5.45 16 3 H 0.05 1.34 6.63 -51.93 -0.34 0.99 16 4 C -0.54 -14.54 9.31 -34.44 -0.32 -14.86 16 5 H 0.08 2.32 7.98 -52.49 -0.42 1.90 16 6 C 0.08 2.24 5.45 -17.82 -0.10 2.14 16 7 N -0.89 -26.14 13.96 55.43 0.77 -25.36 16 8 Si 0.89 21.47 24.37 -169.99 -4.14 17.33 16 9 H -0.27 -6.43 6.87 56.52 0.39 -6.05 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.26 -6.29 6.53 56.52 0.37 -5.92 16 12 N -0.68 -13.83 5.00 -54.94 -0.27 -14.11 16 13 C 0.48 9.12 6.67 -10.99 -0.07 9.05 16 14 O -0.50 -10.78 13.88 -4.31 -0.06 -10.84 16 15 C 0.25 3.85 1.26 -27.88 -0.04 3.81 16 16 F -0.18 -2.78 15.79 2.25 0.04 -2.74 16 17 F -0.19 -2.72 15.92 2.25 0.04 -2.69 16 18 C 0.12 1.55 0.58 -89.50 -0.05 1.50 16 19 O -0.53 -7.23 12.11 -45.10 -0.55 -7.77 16 20 C -0.15 -1.57 5.72 -25.03 -0.14 -1.71 16 21 C -0.12 -1.07 6.91 -24.70 -0.17 -1.24 16 22 C -0.13 -1.29 6.83 -25.07 -0.17 -1.46 16 23 C -0.10 -1.36 4.70 -25.61 -0.12 -1.48 16 24 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.40 7.51 8.11 -40.82 -0.33 7.18 16 29 H 0.38 3.99 8.82 45.56 0.40 4.39 16 30 H 0.08 0.84 7.52 -51.93 -0.39 0.45 16 31 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 32 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.34 7.95 -51.93 -0.41 0.93 16 37 H 0.08 1.28 6.52 -51.93 -0.34 0.95 16 LS Contribution 302.10 15.07 4.55 4.55 Total: -1.00 -30.43 302.10 -4.77 -35.19 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -4.14 Total: 8.47 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.00 Total: -2.04 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.50 Total: -39.47 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.61 Total: -18.61 kcal Atomic # 9 Polarization: -5.50 SS G_CDS: 0.07 Total: -5.43 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.14 Total: 17.33 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.43 -4.77 -35.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788301922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.740 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds