Wall clock time and date at job start Mon Mar 30 2020 01:51:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.46540 * 2 1
4 4 C 1.50696 * 109.47570 * 119.99622 * 2 1 3
5 5 H 1.08000 * 119.99963 * 119.99908 * 4 2 1
6 6 C 1.37876 * 120.00075 * 300.00411 * 4 2 1
7 7 N 1.31513 * 119.99835 * 179.97438 * 6 4 2
8 8 Si 1.86795 * 120.00076 * 359.97438 * 6 4 2
9 9 H 1.48494 * 109.47625 * 89.99928 * 8 6 4
10 10 H 1.48508 * 109.47178 * 209.99967 * 8 6 4
11 11 H 1.48502 * 109.47226 * 329.99623 * 8 6 4
12 12 N 1.46500 * 109.47210 * 240.00116 * 2 1 3
13 13 C 1.34785 * 119.99952 * 84.99451 * 12 2 1
14 14 O 1.21277 * 119.99968 * 0.02562 * 13 12 2
15 15 C 1.50692 * 119.99624 * 180.02562 * 13 12 2
16 16 F 1.39902 * 109.47422 * 275.47645 * 15 13 12
17 17 F 1.39900 * 109.47650 * 35.47831 * 15 13 12
18 18 C 1.53005 * 109.47058 * 155.47693 * 15 13 12
19 19 O 1.42899 * 110.01395 * 305.92646 * 18 15 13
20 20 C 1.54268 * 110.03405 * 184.53237 * 18 15 13
21 21 C 1.54964 * 104.15782 * 217.13729 * 20 18 15
22 22 C 1.54885 * 102.77859 * 37.88695 * 21 20 18
23 23 C 1.53878 * 110.03045 * 67.31260 * 18 15 13
24 24 H 1.09005 * 109.47489 * 299.99600 * 1 2 3
25 25 H 1.08999 * 109.46779 * 180.02562 * 1 2 3
26 26 H 1.08996 * 109.47865 * 60.00126 * 1 2 3
27 27 H 0.97000 * 119.99692 * 179.97438 * 7 6 4
28 28 H 0.96998 * 119.99800 * 264.99899 * 12 2 1
29 29 H 0.96698 * 114.00222 * 305.56373 * 19 18 15
30 30 H 1.08995 * 110.48465 * 335.78224 * 20 18 15
31 31 H 1.09001 * 110.48368 * 98.42664 * 20 18 15
32 32 H 1.09008 * 110.71894 * 279.57335 * 21 20 18
33 33 H 1.08996 * 110.76159 * 156.22738 * 21 20 18
34 34 H 1.09001 * 110.48484 * 203.40639 * 22 21 20
35 35 H 1.09003 * 110.48385 * 80.76459 * 22 21 20
36 36 H 1.09003 * 110.03031 * 238.56966 * 23 18 15
37 37 H 1.08996 * 110.03383 * 0.02562 * 23 18 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0324 -0.7103 1.2304
5 1 2.6533 -1.5884 1.1314
6 6 1.6993 -0.2392 2.4827
7 7 2.1374 -0.8594 3.5565
8 14 0.6259 1.2798 2.6541
9 1 -0.8020 0.8745 2.6993
10 1 0.9772 1.9954 3.9071
11 1 0.8491 2.1774 1.4923
12 7 2.0183 -0.6906 -1.1962
13 6 2.1470 -0.0182 -2.3572
14 8 1.8589 1.1586 -2.4116
15 6 2.6487 -0.7287 -3.5877
16 9 4.0477 -0.7387 -3.5827
17 9 2.1731 -2.0444 -3.5932
18 6 2.1485 -0.0004 -4.8369
19 8 0.7271 0.1376 -4.7862
20 6 2.5590 -0.7800 -6.1032
21 6 2.9024 0.3250 -7.1339
22 6 3.5993 1.4003 -6.2639
23 6 2.8093 1.3855 -4.9390
24 1 -0.3634 0.5138 0.8900
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3635 0.5138 -0.8899
27 1 1.9034 -0.5278 4.4375
28 1 2.2490 -1.6317 -1.1526
29 1 0.2553 -0.6966 -4.6572
30 1 3.4330 -1.3997 -5.9030
31 1 1.7302 -1.3915 -6.4600
32 1 1.9954 0.7239 -7.5882
33 1 3.5823 -0.0555 -7.8961
34 1 3.5296 2.3790 -6.7387
35 1 4.6416 1.1332 -6.0896
36 1 2.0456 2.1632 -4.9509
37 1 3.4866 1.5390 -4.0990
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000788301922.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:51:59
Heat of formation + Delta-G solvation = -185.934389 kcal
Electronic energy + Delta-G solvation = -23281.791060 eV
Core-core repulsion = 19501.880468 eV
Total energy + Delta-G solvation = -3779.910592 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 277.128 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-49.24679 -47.21819 -39.66262 -38.51708 -35.26084 -35.06778 -32.51381 -30.45353
-29.44120 -28.92228 -25.81308 -25.19210 -21.91579 -21.18282 -20.22156 -19.89092
-18.37466 -18.14342 -17.56995 -16.47487 -16.09847 -15.66103 -15.46889 -15.06697
-14.37807 -14.16336 -13.86041 -13.77481 -13.60986 -13.44904 -13.03454 -12.92707
-12.80837 -12.62874 -12.27076 -11.96919 -11.83549 -11.44847 -11.35624 -11.21510
-10.88401 -10.87782 -10.71110 -10.36368 -10.25727 -9.78058 -9.33574 -9.28467
-8.84519 -8.38817 -6.26446 -4.30369 2.60554 3.00022 3.19333 3.31687
3.35031 3.55182 3.85617 4.04727 4.25991 4.31459 4.38237 4.77534
4.84563 4.96965 5.07679 5.27402 5.28324 5.41851 5.51208 5.61293
5.74032 5.85018 5.94443 6.14736 6.20917 6.25419 6.27991 6.44578
6.72532 6.97868 7.09577 7.37507 7.39047 7.89196 8.34335 8.45691
8.72529 9.32381 10.85540
Molecular weight = 277.13amu
Principal moments of inertia in cm(-1)
A = 0.034124 B = 0.005123 C = 0.004943
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 820.329287 B = 5463.837317 C = 5663.312362
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.236 3.764
3 H 0.052 0.948
4 C -0.539 4.539
5 H 0.082 0.918
6 C 0.080 3.920
7 N -0.889 5.889
8 Si 0.885 3.115
9 H -0.275 1.275
10 H -0.293 1.293
11 H -0.262 1.262
12 N -0.680 5.680
13 C 0.477 3.523
14 O -0.503 6.503
15 C 0.249 3.751
16 F -0.176 7.176
17 F -0.190 7.190
18 C 0.116 3.884
19 O -0.525 6.525
20 C -0.150 4.150
21 C -0.117 4.117
22 C -0.127 4.127
23 C -0.100 4.100
24 H 0.050 0.950
25 H 0.055 0.945
26 H 0.038 0.962
27 H 0.269 0.731
28 H 0.401 0.599
29 H 0.377 0.623
30 H 0.080 0.920
31 H 0.081 0.919
32 H 0.072 0.928
33 H 0.070 0.930
34 H 0.072 0.928
35 H 0.070 0.930
36 H 0.092 0.908
37 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.369 0.082 -19.201 19.205
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.133 3.867
3 H 0.070 0.930
4 C -0.577 4.577
5 H 0.100 0.900
6 C -0.124 4.124
7 N -0.525 5.525
8 Si 0.715 3.285
9 H -0.202 1.202
10 H -0.220 1.220
11 H -0.187 1.187
12 N -0.328 5.328
13 C 0.256 3.744
14 O -0.378 6.378
15 C 0.208 3.792
16 F -0.157 7.157
17 F -0.171 7.171
18 C 0.073 3.927
19 O -0.331 6.331
20 C -0.187 4.187
21 C -0.154 4.154
22 C -0.164 4.164
23 C -0.138 4.138
24 H 0.069 0.931
25 H 0.074 0.926
26 H 0.057 0.943
27 H 0.079 0.921
28 H 0.235 0.765
29 H 0.225 0.775
30 H 0.099 0.901
31 H 0.099 0.901
32 H 0.091 0.909
33 H 0.089 0.911
34 H 0.091 0.909
35 H 0.088 0.912
36 H 0.110 0.890
37 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges 0.330 1.525 -19.058 19.122
hybrid contribution -0.488 -0.717 0.536 1.020
sum -0.159 0.808 -18.522 18.540
Atomic orbital electron populations
1.22454 0.98753 1.01171 0.99646 1.19254 0.90521 0.94692 0.82188
0.93006 1.20988 1.33674 1.14671 0.88372 0.90043 1.24813 0.95421
0.96716 0.95419 1.69861 1.44605 1.39983 0.98090 0.86877 0.80561
0.83496 0.77588 1.20160 1.21981 1.18652 1.46277 1.63013 1.14294
1.09202 1.20350 0.81186 0.88279 0.84608 1.90742 1.49114 1.14430
1.83511 1.22614 0.77092 0.80082 0.99367 1.93049 1.28814 1.96395
1.97485 1.93019 1.87878 1.38631 1.97595 1.22613 0.83143 0.97250
0.89714 1.86732 1.15320 1.35978 1.95023 1.23081 1.02580 0.98342
0.94741 1.22433 1.00652 0.95331 0.97021 1.22443 0.99419 0.99415
0.95143 1.22087 0.99455 0.93861 0.98372 0.93130 0.92580 0.94265
0.92145 0.76466 0.77542 0.90150 0.90084 0.90890 0.91114 0.90914
0.91156 0.88987 0.89746
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.57 8.96 37.16 0.33 -3.24 16
2 C 0.24 5.60 2.15 -69.09 -0.15 5.45 16
3 H 0.05 1.34 6.63 -51.93 -0.34 0.99 16
4 C -0.54 -14.54 9.31 -34.44 -0.32 -14.86 16
5 H 0.08 2.32 7.98 -52.49 -0.42 1.90 16
6 C 0.08 2.24 5.45 -17.82 -0.10 2.14 16
7 N -0.89 -26.14 13.96 55.43 0.77 -25.36 16
8 Si 0.89 21.47 24.37 -169.99 -4.14 17.33 16
9 H -0.27 -6.43 6.87 56.52 0.39 -6.05 16
10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
11 H -0.26 -6.29 6.53 56.52 0.37 -5.92 16
12 N -0.68 -13.83 5.00 -54.94 -0.27 -14.11 16
13 C 0.48 9.12 6.67 -10.99 -0.07 9.05 16
14 O -0.50 -10.78 13.88 -4.31 -0.06 -10.84 16
15 C 0.25 3.85 1.26 -27.88 -0.04 3.81 16
16 F -0.18 -2.78 15.79 2.25 0.04 -2.74 16
17 F -0.19 -2.72 15.92 2.25 0.04 -2.69 16
18 C 0.12 1.55 0.58 -89.50 -0.05 1.50 16
19 O -0.53 -7.23 12.11 -45.10 -0.55 -7.77 16
20 C -0.15 -1.57 5.72 -25.03 -0.14 -1.71 16
21 C -0.12 -1.07 6.91 -24.70 -0.17 -1.24 16
22 C -0.13 -1.29 6.83 -25.07 -0.17 -1.46 16
23 C -0.10 -1.36 4.70 -25.61 -0.12 -1.48 16
24 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16
25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16
26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16
27 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16
28 H 0.40 7.51 8.11 -40.82 -0.33 7.18 16
29 H 0.38 3.99 8.82 45.56 0.40 4.39 16
30 H 0.08 0.84 7.52 -51.93 -0.39 0.45 16
31 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16
32 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16
33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16
35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
36 H 0.09 1.34 7.95 -51.93 -0.41 0.93 16
37 H 0.08 1.28 6.52 -51.93 -0.34 0.95 16
LS Contribution 302.10 15.07 4.55 4.55
Total: -1.00 -30.43 302.10 -4.77 -35.19
By element:
Atomic # 1 Polarization: 12.61 SS G_CDS: -4.14 Total: 8.47 kcal
Atomic # 6 Polarization: -1.04 SS G_CDS: -1.00 Total: -2.04 kcal
Atomic # 7 Polarization: -39.97 SS G_CDS: 0.50 Total: -39.47 kcal
Atomic # 8 Polarization: -18.00 SS G_CDS: -0.61 Total: -18.61 kcal
Atomic # 9 Polarization: -5.50 SS G_CDS: 0.07 Total: -5.43 kcal
Atomic # 14 Polarization: 21.47 SS G_CDS: -4.14 Total: 17.33 kcal
Total LS contribution 4.55 Total: 4.55 kcal
Total: -30.43 -4.77 -35.19 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000788301922.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -150.740 kcal
(2) G-P(sol) polarization free energy of solvation -30.429 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.169 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.766 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.194 kcal
(6) G-S(sol) free energy of system = (1) + (5) -185.934 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds