Wall clock time and date at job start Mon Mar 30 2020 01:51:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.46540 * 2 1
4 4 C 1.50696 * 109.47570 * 119.99622 * 2 1 3
5 5 H 1.08000 * 119.99963 * 119.99908 * 4 2 1
6 6 C 1.37876 * 120.00075 * 300.00411 * 4 2 1
7 7 N 1.31513 * 119.99835 * 179.97438 * 6 4 2
8 8 Si 1.86795 * 120.00076 * 359.97438 * 6 4 2
9 9 H 1.48494 * 109.47625 * 89.99928 * 8 6 4
10 10 H 1.48508 * 109.47178 * 209.99967 * 8 6 4
11 11 H 1.48502 * 109.47226 * 329.99623 * 8 6 4
12 12 N 1.46500 * 109.47210 * 240.00116 * 2 1 3
13 13 C 1.34785 * 119.99952 * 84.99451 * 12 2 1
14 14 O 1.21277 * 119.99968 * 0.02562 * 13 12 2
15 15 C 1.50692 * 119.99624 * 180.02562 * 13 12 2
16 16 F 1.39902 * 109.47422 * 275.47645 * 15 13 12
17 17 F 1.39900 * 109.47650 * 35.47831 * 15 13 12
18 18 C 1.53005 * 109.47058 * 155.47693 * 15 13 12
19 19 O 1.42899 * 110.01395 * 305.92646 * 18 15 13
20 20 C 1.54268 * 110.03405 * 184.53237 * 18 15 13
21 21 C 1.54964 * 104.15782 * 217.13729 * 20 18 15
22 22 C 1.54885 * 102.77859 * 37.88695 * 21 20 18
23 23 C 1.53878 * 110.03045 * 67.31260 * 18 15 13
24 24 H 1.09005 * 109.47489 * 299.99600 * 1 2 3
25 25 H 1.08999 * 109.46779 * 180.02562 * 1 2 3
26 26 H 1.08996 * 109.47865 * 60.00126 * 1 2 3
27 27 H 0.97000 * 119.99692 * 179.97438 * 7 6 4
28 28 H 0.96998 * 119.99800 * 264.99899 * 12 2 1
29 29 H 0.96698 * 114.00222 * 305.56373 * 19 18 15
30 30 H 1.08995 * 110.48465 * 335.78224 * 20 18 15
31 31 H 1.09001 * 110.48368 * 98.42664 * 20 18 15
32 32 H 1.09008 * 110.71894 * 279.57335 * 21 20 18
33 33 H 1.08996 * 110.76159 * 156.22738 * 21 20 18
34 34 H 1.09001 * 110.48484 * 203.40639 * 22 21 20
35 35 H 1.09003 * 110.48385 * 80.76459 * 22 21 20
36 36 H 1.09003 * 110.03031 * 238.56966 * 23 18 15
37 37 H 1.08996 * 110.03383 * 0.02562 * 23 18 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0324 -0.7103 1.2304
5 1 2.6533 -1.5884 1.1314
6 6 1.6993 -0.2392 2.4827
7 7 2.1374 -0.8594 3.5565
8 14 0.6259 1.2798 2.6541
9 1 -0.8020 0.8745 2.6993
10 1 0.9772 1.9954 3.9071
11 1 0.8491 2.1774 1.4923
12 7 2.0183 -0.6906 -1.1962
13 6 2.1470 -0.0182 -2.3572
14 8 1.8589 1.1586 -2.4116
15 6 2.6487 -0.7287 -3.5877
16 9 4.0477 -0.7387 -3.5827
17 9 2.1731 -2.0444 -3.5932
18 6 2.1485 -0.0004 -4.8369
19 8 0.7271 0.1376 -4.7862
20 6 2.5590 -0.7800 -6.1032
21 6 2.9024 0.3250 -7.1339
22 6 3.5993 1.4003 -6.2639
23 6 2.8093 1.3855 -4.9390
24 1 -0.3634 0.5138 0.8900
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3635 0.5138 -0.8899
27 1 1.9034 -0.5278 4.4375
28 1 2.2490 -1.6317 -1.1526
29 1 0.2553 -0.6966 -4.6572
30 1 3.4330 -1.3997 -5.9030
31 1 1.7302 -1.3915 -6.4600
32 1 1.9954 0.7239 -7.5882
33 1 3.5823 -0.0555 -7.8961
34 1 3.5296 2.3790 -6.7387
35 1 4.6416 1.1332 -6.0896
36 1 2.0456 2.1632 -4.9509
37 1 3.4866 1.5390 -4.0990
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000788301922.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:51:58
Heat of formation + Delta-G solvation = -208.570484 kcal
Electronic energy + Delta-G solvation = -23282.772634 eV
Core-core repulsion = 19501.880468 eV
Total energy + Delta-G solvation = -3780.892166 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 277.128 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-50.49722 -48.46331 -41.06491 -39.72272 -37.03452 -36.04510 -34.52849 -32.18877
-30.65910 -29.80742 -27.34505 -26.88408 -23.50822 -22.10261 -21.65416 -21.22735
-19.91022 -19.31157 -18.79584 -18.39666 -17.47504 -16.93427 -16.71441 -16.54007
-15.85003 -15.51659 -15.27059 -15.16865 -14.95503 -14.79164 -14.55194 -14.28135
-14.15783 -13.86084 -13.76760 -13.58775 -13.30324 -12.83808 -12.78049 -12.22710
-12.16667 -12.13363 -11.85756 -11.65823 -11.54999 -11.38759 -11.37289 -10.93329
-10.76448 -10.15734 -8.42226 -6.50268 1.06896 1.26444 1.34332 1.43324
1.56862 2.22912 2.34582 2.69423 2.92484 2.94860 3.16600 3.40795
3.55435 3.75172 4.17422 4.35318 4.37333 4.38906 4.47692 4.52468
4.60101 4.69138 4.82575 4.89290 5.00027 5.04319 5.15442 5.18606
5.20668 5.29536 5.41939 5.42508 5.98758 6.41698 6.50153 6.54465
6.86985 7.17547 8.73038
Molecular weight = 277.13amu
Principal moments of inertia in cm(-1)
A = 0.034124 B = 0.005123 C = 0.004943
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 820.329287 B = 5463.837317 C = 5663.312362
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.241 3.759
3 H 0.031 0.969
4 C -0.541 4.541
5 H 0.054 0.946
6 C 0.032 3.968
7 N -0.931 5.931
8 Si 0.940 3.060
9 H -0.256 1.256
10 H -0.291 1.291
11 H -0.260 1.260
12 N -0.684 5.684
13 C 0.473 3.527
14 O -0.526 6.526
15 C 0.259 3.741
16 F -0.177 7.177
17 F -0.181 7.181
18 C 0.116 3.884
19 O -0.539 6.539
20 C -0.145 4.145
21 C -0.111 4.111
22 C -0.123 4.123
23 C -0.106 4.106
24 H 0.046 0.954
25 H 0.066 0.934
26 H 0.051 0.949
27 H 0.272 0.728
28 H 0.408 0.592
29 H 0.389 0.611
30 H 0.082 0.918
31 H 0.098 0.902
32 H 0.077 0.923
33 H 0.094 0.906
34 H 0.086 0.914
35 H 0.075 0.925
36 H 0.076 0.924
37 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.353 0.174 -21.393 21.397
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.137 3.863
3 H 0.048 0.952
4 C -0.579 4.579
5 H 0.072 0.928
6 C -0.169 4.169
7 N -0.569 5.569
8 Si 0.767 3.233
9 H -0.182 1.182
10 H -0.218 1.218
11 H -0.185 1.185
12 N -0.333 5.333
13 C 0.254 3.746
14 O -0.403 6.403
15 C 0.219 3.781
16 F -0.158 7.158
17 F -0.162 7.162
18 C 0.073 3.927
19 O -0.346 6.346
20 C -0.183 4.183
21 C -0.148 4.148
22 C -0.160 4.160
23 C -0.144 4.144
24 H 0.064 0.936
25 H 0.085 0.915
26 H 0.070 0.930
27 H 0.082 0.918
28 H 0.243 0.757
29 H 0.239 0.761
30 H 0.101 0.899
31 H 0.117 0.883
32 H 0.096 0.904
33 H 0.112 0.888
34 H 0.104 0.896
35 H 0.094 0.906
36 H 0.095 0.905
37 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -0.396 1.590 -21.278 21.341
hybrid contribution -0.198 -0.787 1.229 1.473
sum -0.594 0.803 -20.049 20.074
Atomic orbital electron populations
1.22339 0.96986 1.02044 0.99966 1.18940 0.91795 0.93272 0.82262
0.95164 1.21183 1.32944 1.13834 0.89919 0.92756 1.25562 0.96723
0.99452 0.95121 1.69972 1.46335 1.41850 0.98750 0.85984 0.79818
0.80055 0.77454 1.18183 1.21768 1.18479 1.46149 1.63540 1.14617
1.08979 1.20962 0.80312 0.88141 0.85169 1.90727 1.49789 1.15589
1.84149 1.22474 0.76952 0.80395 0.98312 1.93050 1.28933 1.96431
1.97422 1.93042 1.87735 1.37898 1.97499 1.22776 0.82995 0.97284
0.89676 1.86708 1.15562 1.37315 1.95001 1.23111 1.03276 0.98631
0.93254 1.22453 1.01242 0.94255 0.96854 1.22455 0.99235 1.00835
0.93494 1.22109 0.99050 0.93690 0.99524 0.93595 0.91461 0.93038
0.91846 0.75653 0.76060 0.89932 0.88336 0.90447 0.88765 0.89577
0.90622 0.90546 0.92161
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -6.62 8.96 71.98 0.65 -5.98 16
2 C 0.24 11.42 2.15 44.24 0.10 11.51 16
3 H 0.03 1.58 6.63 -2.39 -0.02 1.56 16
4 C -0.54 -29.57 9.31 25.60 0.24 -29.34 16
5 H 0.05 3.19 7.98 -2.91 -0.02 3.17 16
6 C 0.03 1.78 5.45 84.65 0.46 2.24 16
7 N -0.93 -55.54 13.96 21.45 0.30 -55.24 16
8 Si 0.94 43.96 24.37 68.60 1.67 45.64 16
9 H -0.26 -11.18 6.87 99.48 0.68 -10.49 16
10 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16
11 H -0.26 -12.02 6.53 99.48 0.65 -11.37 16
12 N -0.68 -27.72 5.00 -446.11 -2.23 -29.95 16
13 C 0.47 17.92 6.67 87.65 0.58 18.50 16
14 O -0.53 -22.55 13.88 6.41 0.09 -22.46 16
15 C 0.26 7.70 1.26 29.85 0.04 7.74 16
16 F -0.18 -5.41 15.79 44.97 0.71 -4.70 16
17 F -0.18 -4.84 15.92 44.97 0.72 -4.13 16
18 C 0.12 2.91 0.58 -10.07 -0.01 2.91 16
19 O -0.54 -13.91 12.11 -139.55 -1.69 -15.60 16
20 C -0.15 -2.60 5.72 31.70 0.18 -2.42 16
21 C -0.11 -1.65 6.91 31.91 0.22 -1.43 16
22 C -0.12 -2.23 6.83 31.67 0.22 -2.01 16
23 C -0.11 -2.79 4.70 31.32 0.15 -2.65 16
24 H 0.05 1.99 3.27 -2.38 -0.01 1.98 16
25 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16
26 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16
27 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16
28 H 0.41 15.25 8.11 -92.71 -0.75 14.50 16
29 H 0.39 7.44 8.82 -74.06 -0.65 6.79 16
30 H 0.08 1.47 7.52 -2.39 -0.02 1.45 16
31 H 0.10 1.44 8.07 -2.39 -0.02 1.42 16
32 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16
33 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16
34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16
35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16
36 H 0.08 2.22 7.95 -2.39 -0.02 2.20 16
37 H 0.06 1.85 6.52 -2.39 -0.02 1.83 16
Total: -1.00 -65.25 302.10 2.02 -63.24
By element:
Atomic # 1 Polarization: 24.49 SS G_CDS: -0.37 Total: 24.12 kcal
Atomic # 6 Polarization: -3.74 SS G_CDS: 2.82 Total: -0.92 kcal
Atomic # 7 Polarization: -83.26 SS G_CDS: -1.93 Total: -85.19 kcal
Atomic # 8 Polarization: -36.46 SS G_CDS: -1.60 Total: -38.06 kcal
Atomic # 9 Polarization: -10.25 SS G_CDS: 1.43 Total: -8.83 kcal
Atomic # 14 Polarization: 43.96 SS G_CDS: 1.67 Total: 45.64 kcal
Total: -65.25 2.02 -63.24 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000788301922.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -145.332 kcal
(2) G-P(sol) polarization free energy of solvation -65.254 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.586 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.239 kcal
(6) G-S(sol) free energy of system = (1) + (5) -208.570 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds