Wall clock time and date at job start Mon Mar 30 2020 01:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46613 * 2 1 4 4 C 1.37105 * 119.99995 * 274.77084 * 3 2 1 5 5 H 1.07994 * 119.99988 * 184.01838 * 4 3 2 6 6 C 1.38951 * 119.99701 * 3.73782 * 4 3 2 7 7 N 1.31413 * 120.00117 * 11.94992 * 6 4 3 8 8 Si 1.86802 * 119.99812 * 191.94055 * 6 4 3 9 9 H 1.48496 * 109.47255 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46668 * 120.00574 * 8 6 4 11 11 H 1.48497 * 109.47001 * 240.00346 * 8 6 4 12 12 C 1.34773 * 120.00423 * 94.78165 * 3 2 1 13 13 O 1.21287 * 120.00521 * 175.53663 * 12 3 2 14 14 C 1.50704 * 119.99703 * 355.52599 * 12 3 2 15 15 F 1.39903 * 109.47467 * 322.79338 * 14 12 3 16 16 F 1.39901 * 109.46851 * 82.78989 * 14 12 3 17 17 C 1.52996 * 109.47278 * 202.79025 * 14 12 3 18 18 O 1.42902 * 110.01741 * 59.30491 * 17 14 12 19 19 C 1.54269 * 110.03463 * 297.91123 * 17 14 12 20 20 C 1.54960 * 104.15975 * 217.13622 * 19 17 14 21 21 C 1.54892 * 102.77787 * 37.88876 * 20 19 17 22 22 C 1.53875 * 110.03150 * 180.69318 * 17 14 12 23 23 H 1.09005 * 109.47064 * 300.00077 * 1 2 3 24 24 H 1.09001 * 109.47556 * 60.00272 * 1 2 3 25 25 H 1.08997 * 109.46954 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.46829 * 239.99886 * 2 1 3 27 27 H 1.08996 * 109.47159 * 119.99502 * 2 1 3 28 28 H 0.97000 * 120.00070 * 179.97438 * 7 6 4 29 29 H 0.96701 * 113.99547 * 300.69881 * 18 17 14 30 30 H 1.09001 * 110.48248 * 335.78528 * 19 17 14 31 31 H 1.08993 * 110.48630 * 98.42571 * 19 17 14 32 32 H 1.09002 * 110.72469 * 279.57367 * 20 19 17 33 33 H 1.09008 * 110.76322 * 156.22151 * 20 19 17 34 34 H 1.09003 * 110.48005 * 203.40572 * 21 20 19 35 35 H 1.08993 * 110.48953 * 80.76401 * 21 20 19 36 36 H 1.09005 * 110.03126 * 238.56653 * 22 17 14 37 37 H 1.08990 * 110.03711 * 359.97438 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1536 2.0605 -1.1832 5 1 2.5743 3.0551 -1.1898 6 6 1.7548 1.4668 -2.3746 7 7 1.0389 0.3650 -2.3523 8 14 2.2360 2.2352 -4.0079 9 1 3.0363 3.4615 -3.7613 10 1 3.0440 1.2665 -4.7915 11 1 1.0108 2.5878 -4.7691 12 6 2.3345 1.9842 1.1631 13 8 2.8147 3.0980 1.1579 14 6 2.0913 1.2747 2.4702 15 9 0.9019 0.5425 2.3892 16 9 3.1561 0.4066 2.7346 17 6 1.9808 2.3042 3.5965 18 8 0.9061 3.2075 3.3299 19 6 3.3051 3.0838 3.7318 20 6 3.4657 3.2963 5.2583 21 6 2.9417 1.9627 5.8468 22 6 1.7495 1.5920 4.9408 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 0.7602 -0.0492 -3.1840 29 1 0.9991 3.6954 2.5002 30 1 4.1352 2.4966 3.3390 31 1 3.2377 4.0424 3.2174 32 1 2.8563 4.1340 5.5974 33 1 4.5131 3.4485 5.5192 34 1 2.6098 2.1041 6.8754 35 1 3.7129 1.1942 5.7961 36 1 0.8179 1.9361 5.3902 37 1 1.7155 0.5130 4.7907 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791333447.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:25 Heat of formation + Delta-G solvation = -180.051724 kcal Electronic energy + Delta-G solvation = -24176.919546 eV Core-core repulsion = 20397.264046 eV Total energy + Delta-G solvation = -3779.655500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.32648 -48.22648 -40.76884 -39.65415 -37.24927 -35.92172 -33.83758 -31.42883 -30.68571 -29.82457 -27.88323 -25.83611 -24.09258 -22.28969 -21.66387 -20.99423 -19.13982 -18.98130 -18.70006 -18.45817 -17.27076 -16.97709 -16.42557 -15.95479 -15.73963 -15.49638 -15.34237 -15.11112 -14.62647 -14.52495 -14.17037 -14.06920 -13.81345 -13.58521 -13.44795 -13.10049 -12.89614 -12.76976 -12.66828 -12.21741 -12.16952 -12.11774 -12.07833 -11.83582 -11.69396 -11.49307 -11.19011 -10.91060 -10.36681 -9.92666 -8.35496 -6.04852 1.19715 1.41499 1.54747 1.61627 2.04060 2.39136 2.66875 2.87328 2.97635 3.05149 3.38153 3.56744 3.75224 3.91622 4.18754 4.31074 4.40968 4.43494 4.58233 4.71250 4.82324 4.86779 4.90298 4.99012 5.07537 5.09159 5.15292 5.26965 5.29986 5.42565 5.45880 5.80891 5.87267 6.29306 6.37474 6.93763 7.19597 7.66501 8.50235 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.030888 B = 0.006490 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.275695 B = 4313.052461 C = 4739.982735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.115 3.885 3 N -0.414 5.414 4 C -0.342 4.342 5 H 0.091 0.909 6 C 0.001 3.999 7 N -0.863 5.863 8 Si 1.001 2.999 9 H -0.273 1.273 10 H -0.268 1.268 11 H -0.269 1.269 12 C 0.367 3.633 13 O -0.594 6.594 14 C 0.264 3.736 15 F -0.186 7.186 16 F -0.192 7.192 17 C 0.114 3.886 18 O -0.547 6.547 19 C -0.129 4.129 20 C -0.116 4.116 21 C -0.114 4.114 22 C -0.114 4.114 23 H 0.034 0.966 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.101 0.899 27 H 0.041 0.959 28 H 0.278 0.722 29 H 0.384 0.616 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.230 -0.482 10.098 10.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.008 4.008 3 N -0.129 5.129 4 C -0.470 4.470 5 H 0.108 0.892 6 C -0.202 4.202 7 N -0.501 5.501 8 Si 0.823 3.177 9 H -0.198 1.198 10 H -0.193 1.193 11 H -0.195 1.195 12 C 0.154 3.846 13 O -0.483 6.483 14 C 0.223 3.777 15 F -0.166 7.166 16 F -0.173 7.173 17 C 0.072 3.928 18 O -0.354 6.354 19 C -0.167 4.167 20 C -0.153 4.153 21 C -0.151 4.151 22 C -0.151 4.151 23 H 0.053 0.947 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.119 0.881 27 H 0.059 0.941 28 H 0.089 0.911 29 H 0.235 0.765 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.121 -0.413 10.474 10.541 hybrid contribution 0.203 0.016 -1.745 1.756 sum 1.324 -0.397 8.729 8.838 Atomic orbital electron populations 1.22088 0.94714 1.01044 1.00977 1.21929 0.96455 0.81554 1.00818 1.44240 1.50992 1.12535 1.05134 1.19972 1.41634 1.01726 0.83629 0.89155 1.26174 0.94561 0.96888 1.02624 1.70280 1.31579 1.19258 1.29000 0.84767 0.78395 0.78200 0.76309 1.19804 1.19276 1.19452 1.20429 0.90303 0.88668 0.85238 1.90504 1.51351 1.20580 1.85874 1.22342 0.72559 0.85185 0.97582 1.92979 1.47197 1.79412 1.97054 1.92960 1.57117 1.72158 1.95037 1.22712 0.90012 0.87806 0.92314 1.86427 1.45974 1.57128 1.45919 1.22880 0.94583 1.00411 0.98846 1.22543 1.02431 0.98187 0.92147 1.22381 0.96110 0.97315 0.99323 1.22251 1.01927 0.99509 0.91443 0.94723 0.91324 0.92414 0.88124 0.94098 0.91104 0.76545 0.92108 0.90870 0.90445 0.89345 0.88290 0.90599 0.88981 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 9.03 71.98 0.65 -5.17 16 2 C 0.11 5.46 4.87 86.38 0.42 5.89 16 3 N -0.41 -21.60 2.63 -635.56 -1.67 -23.27 16 4 C -0.34 -18.62 9.53 84.04 0.80 -17.82 16 5 H 0.09 5.17 7.19 -2.91 -0.02 5.15 16 6 C 0.00 0.05 5.28 84.93 0.45 0.50 16 7 N -0.86 -42.00 7.41 21.66 0.16 -41.84 16 8 Si 1.00 39.90 29.57 68.60 2.03 41.93 16 9 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 10 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 11 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 12 C 0.37 18.22 6.43 87.66 0.56 18.78 16 13 O -0.59 -30.97 12.69 -0.30 0.00 -30.97 16 14 C 0.26 11.05 0.55 29.85 0.02 11.06 16 15 F -0.19 -7.81 11.49 44.97 0.52 -7.30 16 16 F -0.19 -7.82 15.28 44.97 0.69 -7.13 16 17 C 0.11 4.10 0.65 -10.07 -0.01 4.09 16 18 O -0.55 -20.71 12.83 -146.23 -1.88 -22.59 16 19 C -0.13 -4.35 4.43 31.69 0.14 -4.21 16 20 C -0.12 -2.78 6.91 31.91 0.22 -2.56 16 21 C -0.11 -2.50 6.83 31.67 0.22 -2.28 16 22 C -0.11 -3.24 5.90 31.32 0.18 -3.06 16 23 H 0.03 1.53 5.95 -2.38 -0.01 1.52 16 24 H 0.07 3.36 6.08 -2.39 -0.01 3.34 16 25 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.10 5.05 5.82 -2.39 -0.01 5.04 16 27 H 0.04 1.85 5.71 -2.39 -0.01 1.84 16 28 H 0.28 12.52 8.31 -92.71 -0.77 11.74 16 29 H 0.38 15.19 7.35 -74.06 -0.54 14.64 16 30 H 0.06 2.22 7.27 -2.39 -0.02 2.20 16 31 H 0.07 2.70 7.22 -2.39 -0.02 2.68 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.09 2.48 7.96 -2.38 -0.02 2.46 16 37 H 0.07 2.13 7.32 -2.39 -0.02 2.11 16 Total: -1.00 -57.97 290.52 4.06 -53.92 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: 0.56 Total: 32.05 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 3.66 Total: 5.21 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: -1.51 Total: -65.12 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -1.88 Total: -53.56 kcal Atomic # 9 Polarization: -15.63 SS G_CDS: 1.20 Total: -14.43 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Total: -57.97 4.06 -53.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791333447.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.135 kcal (2) G-P(sol) polarization free energy of solvation -57.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds