Wall clock time and date at job start Mon Mar 30 2020 01:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 120.00388 * 2 1 4 4 N 1.46496 * 109.47359 * 124.99498 * 3 2 1 5 5 C 1.46503 * 120.00076 * 268.08224 * 4 3 2 6 6 C 1.50702 * 109.47151 * 264.40170 * 5 4 3 7 7 H 1.08002 * 119.99547 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99862 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00565 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99718 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47009 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47313 * 119.99316 * 10 8 6 13 13 H 1.48498 * 109.46790 * 239.99581 * 10 8 6 14 14 C 1.34781 * 120.00026 * 88.07753 * 4 3 2 15 15 O 1.21277 * 119.99644 * 5.26716 * 14 4 3 16 16 C 1.50693 * 120.00139 * 185.53638 * 14 4 3 17 17 H 1.09007 * 109.47424 * 15.35434 * 16 14 4 18 18 F 1.39907 * 109.47155 * 255.35870 * 16 14 4 19 19 C 1.50695 * 109.47215 * 135.35767 * 16 14 4 20 20 C 1.38237 * 119.99864 * 64.73219 * 19 16 14 21 21 C 1.38237 * 119.99710 * 179.81377 * 20 19 16 22 22 C 1.38228 * 120.00415 * 0.38828 * 21 20 19 23 23 C 1.38241 * 119.99738 * 359.86400 * 22 21 20 24 24 C 1.38233 * 119.99942 * 359.94960 * 23 22 21 25 25 H 1.08001 * 119.99768 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99966 * 179.97438 * 1 2 3 27 27 H 1.08008 * 120.00042 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.46452 * 4.99720 * 3 2 1 29 29 H 1.08993 * 109.46962 * 244.99730 * 3 2 1 30 30 H 1.09001 * 109.46934 * 24.40319 * 5 4 3 31 31 H 1.09002 * 109.46889 * 144.40446 * 5 4 3 32 32 H 0.96996 * 120.00565 * 180.02562 * 9 8 6 33 33 H 1.07998 * 120.00058 * 359.97438 * 20 19 16 34 34 H 1.08008 * 119.99807 * 180.22469 * 21 20 19 35 35 H 1.07998 * 120.00214 * 179.83523 * 22 21 20 36 36 H 1.07998 * 119.99838 * 179.97438 * 23 22 21 37 37 H 1.07996 * 119.99819 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5723 1.9035 2.4128 6 6 3.0183 3.3408 2.4927 7 1 3.5617 3.7839 1.6713 8 6 2.7335 4.0895 3.6148 9 7 2.0722 3.5498 4.6153 10 14 3.2857 5.8714 3.7135 11 1 4.0054 6.2363 2.4669 12 1 2.0990 6.7492 3.8754 13 1 4.1922 6.0449 4.8769 14 6 4.2373 0.8306 0.9936 15 8 4.6187 0.4450 -0.0911 16 6 5.1514 0.7438 2.1884 17 1 4.5686 0.8660 3.1015 18 9 6.1160 1.7543 2.1121 19 6 5.8323 -0.6005 2.2033 20 6 6.7090 -0.9425 1.1907 21 6 7.3365 -2.1741 1.2064 22 6 7.0813 -3.0669 2.2303 23 6 6.2006 -2.7270 3.2402 24 6 5.5760 -1.4939 3.2266 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6214 1.4025 -0.9313 30 1 1.4863 1.8550 2.4926 31 1 3.0222 1.3376 3.2286 32 1 1.8715 4.0766 5.4045 33 1 6.9056 -0.2464 0.3887 34 1 8.0242 -2.4399 0.4171 35 1 7.5695 -4.0302 2.2412 36 1 6.0008 -3.4247 4.0400 37 1 4.8883 -1.2282 4.0158 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814137939.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:10 Heat of formation + Delta-G solvation = -34.491569 kcal Electronic energy + Delta-G solvation = -21508.239231 eV Core-core repulsion = 18165.664918 eV Total energy + Delta-G solvation = -3342.574313 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.24875 -39.45774 -38.55000 -35.61466 -33.61806 -32.31320 -31.95037 -30.73881 -27.87838 -27.26320 -24.97937 -23.10371 -22.45539 -21.53305 -19.84292 -18.64864 -17.06530 -16.80542 -16.67176 -16.03417 -15.57310 -15.15060 -14.71665 -14.54288 -14.41482 -13.97766 -13.83692 -13.22917 -13.03334 -12.71977 -12.54387 -12.37771 -12.06274 -11.78456 -11.57446 -11.52024 -11.04767 -10.94392 -10.93825 -10.88820 -10.40617 -10.19378 -9.79091 -9.34157 -9.05449 -8.74369 -8.68525 -8.53607 -7.89644 -6.23453 -4.31031 1.38717 1.56908 2.47971 3.06860 3.22081 3.30751 3.36915 3.69939 3.98031 4.31523 4.71095 4.94840 5.02672 5.10505 5.11996 5.26017 5.29368 5.44751 5.47367 5.60627 5.72083 5.86183 5.90406 6.04523 6.11296 6.22968 6.25492 6.54764 6.57774 6.62900 6.77066 6.85267 6.94220 7.05798 7.11533 7.38616 7.72507 7.96454 8.09986 8.65375 8.81918 9.37901 10.83547 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014499 B = 0.006450 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.711385 B = 4340.238025 C = 5388.242128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.157 4.157 3 C 0.142 3.858 4 N -0.582 5.582 5 C 0.233 3.767 6 C -0.540 4.540 7 H 0.064 0.936 8 C 0.067 3.933 9 N -0.891 5.891 10 Si 0.898 3.102 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.281 1.281 14 C 0.503 3.497 15 O -0.552 6.552 16 C 0.125 3.875 17 H 0.120 0.880 18 F -0.183 7.183 19 C -0.117 4.117 20 C -0.069 4.069 21 C -0.130 4.130 22 C -0.115 4.115 23 C -0.130 4.130 24 C -0.096 4.096 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.037 0.963 32 H 0.266 0.734 33 H 0.131 0.869 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.424 -10.332 -3.276 11.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.176 4.176 3 C 0.019 3.981 4 N -0.312 5.312 5 C 0.113 3.887 6 C -0.578 4.578 7 H 0.082 0.918 8 C -0.136 4.136 9 N -0.530 5.530 10 Si 0.725 3.275 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.207 1.207 14 C 0.288 3.712 15 O -0.431 6.431 16 C 0.086 3.914 17 H 0.138 0.862 18 F -0.163 7.163 19 C -0.118 4.118 20 C -0.087 4.087 21 C -0.148 4.148 22 C -0.133 4.133 23 C -0.148 4.148 24 C -0.114 4.114 25 H 0.116 0.884 26 H 0.112 0.888 27 H 0.122 0.878 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.149 0.851 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.548 -10.430 -3.648 11.605 hybrid contribution 0.177 1.091 0.305 1.147 sum 3.725 -9.338 -3.343 10.595 Atomic orbital electron populations 1.23781 0.95710 1.01655 1.01577 1.23363 0.96111 0.99182 0.98979 1.20478 0.92148 0.94953 0.90509 1.48256 1.11238 1.56903 1.14782 1.19598 0.97117 0.93622 0.78314 1.21529 1.37148 0.96008 1.03151 0.91790 1.24923 0.94569 0.98908 0.95217 1.69920 1.39347 1.37059 1.06626 0.86424 0.78498 0.84127 0.78428 1.19511 1.20827 1.20671 1.20538 0.82961 0.78045 0.89614 1.90598 1.75086 1.49946 1.27456 1.20396 0.87256 0.83083 1.00670 0.86231 1.92873 1.64493 1.61347 1.97631 1.20007 0.99543 0.95548 0.96668 1.21136 0.94098 0.96495 0.96954 1.21132 1.00595 0.94203 0.98898 1.21167 0.98160 0.99246 0.94689 1.21052 0.97977 0.96587 0.99169 1.21078 0.99164 0.93633 0.97547 0.88365 0.88790 0.87798 0.89560 0.89907 0.93813 0.94579 0.92459 0.85129 0.86050 0.86247 0.85923 0.85456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.63 14.32 29.01 0.42 -2.22 16 2 C -0.16 -2.53 9.84 -36.03 -0.35 -2.88 16 3 C 0.14 2.60 5.84 -5.20 -0.03 2.57 16 4 N -0.58 -12.25 2.46 -176.44 -0.43 -12.69 16 5 C 0.23 5.43 4.93 -5.19 -0.03 5.41 16 6 C -0.54 -14.05 9.34 -34.44 -0.32 -14.37 16 7 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 8 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -24.20 13.29 55.43 0.74 -23.46 16 10 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 C 0.50 10.73 6.94 -10.99 -0.08 10.65 16 15 O -0.55 -12.34 14.74 5.56 0.08 -12.26 16 16 C 0.12 2.49 3.62 -29.04 -0.11 2.39 16 17 H 0.12 2.40 5.26 -51.93 -0.27 2.12 16 18 F -0.18 -3.97 16.92 2.25 0.04 -3.94 16 19 C -0.12 -2.04 5.01 -104.63 -0.52 -2.56 16 20 C -0.07 -1.14 8.56 -39.58 -0.34 -1.48 16 21 C -0.13 -1.77 10.05 -39.59 -0.40 -2.17 16 22 C -0.11 -1.40 10.05 -39.58 -0.40 -1.80 16 23 C -0.13 -1.65 10.05 -39.58 -0.40 -2.05 16 24 C -0.10 -1.44 9.67 -39.58 -0.38 -1.82 16 25 H 0.10 1.31 7.84 -52.49 -0.41 0.90 16 26 H 0.09 1.13 8.06 -52.49 -0.42 0.70 16 27 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 28 H 0.09 1.53 7.71 -51.93 -0.40 1.13 16 29 H 0.08 1.53 7.41 -51.93 -0.38 1.14 16 30 H 0.04 1.06 8.03 -51.93 -0.42 0.64 16 31 H 0.04 0.86 5.85 -51.93 -0.30 0.55 16 32 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.13 2.29 7.39 -52.49 -0.39 1.90 16 34 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 36 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.13 1.73 7.95 -52.49 -0.42 1.32 16 LS Contribution 325.78 15.07 4.91 4.91 Total: -1.00 -29.06 325.78 -7.38 -36.43 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -4.66 Total: 3.96 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -3.03 Total: -8.67 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.30 Total: -36.15 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.08 Total: -12.26 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.04 Total: -3.94 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.06 -7.38 -36.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814137939.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.942 kcal (2) G-P(sol) polarization free energy of solvation -29.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds