Wall clock time and date at job start Mon Mar 30 2020 01:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 120.00388 * 2 1 4 4 N 1.46496 * 109.47359 * 124.99498 * 3 2 1 5 5 C 1.46503 * 120.00076 * 268.08224 * 4 3 2 6 6 C 1.50702 * 109.47151 * 264.40170 * 5 4 3 7 7 H 1.08002 * 119.99547 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99862 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00565 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99718 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47009 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47313 * 119.99316 * 10 8 6 13 13 H 1.48498 * 109.46790 * 239.99581 * 10 8 6 14 14 C 1.34781 * 120.00026 * 88.07753 * 4 3 2 15 15 O 1.21277 * 119.99644 * 5.26716 * 14 4 3 16 16 C 1.50693 * 120.00139 * 185.53638 * 14 4 3 17 17 H 1.09007 * 109.47424 * 15.35434 * 16 14 4 18 18 F 1.39907 * 109.47155 * 255.35870 * 16 14 4 19 19 C 1.50695 * 109.47215 * 135.35767 * 16 14 4 20 20 C 1.38237 * 119.99864 * 64.73219 * 19 16 14 21 21 C 1.38237 * 119.99710 * 179.81377 * 20 19 16 22 22 C 1.38228 * 120.00415 * 0.38828 * 21 20 19 23 23 C 1.38241 * 119.99738 * 359.86400 * 22 21 20 24 24 C 1.38233 * 119.99942 * 359.94960 * 23 22 21 25 25 H 1.08001 * 119.99768 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99966 * 179.97438 * 1 2 3 27 27 H 1.08008 * 120.00042 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.46452 * 4.99720 * 3 2 1 29 29 H 1.08993 * 109.46962 * 244.99730 * 3 2 1 30 30 H 1.09001 * 109.46934 * 24.40319 * 5 4 3 31 31 H 1.09002 * 109.46889 * 144.40446 * 5 4 3 32 32 H 0.96996 * 120.00565 * 180.02562 * 9 8 6 33 33 H 1.07998 * 120.00058 * 359.97438 * 20 19 16 34 34 H 1.08008 * 119.99807 * 180.22469 * 21 20 19 35 35 H 1.07998 * 120.00214 * 179.83523 * 22 21 20 36 36 H 1.07998 * 119.99838 * 179.97438 * 23 22 21 37 37 H 1.07996 * 119.99819 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5723 1.9035 2.4128 6 6 3.0183 3.3408 2.4927 7 1 3.5617 3.7839 1.6713 8 6 2.7335 4.0895 3.6148 9 7 2.0722 3.5498 4.6153 10 14 3.2857 5.8714 3.7135 11 1 4.0054 6.2363 2.4669 12 1 2.0990 6.7492 3.8754 13 1 4.1922 6.0449 4.8769 14 6 4.2373 0.8306 0.9936 15 8 4.6187 0.4450 -0.0911 16 6 5.1514 0.7438 2.1884 17 1 4.5686 0.8660 3.1015 18 9 6.1160 1.7543 2.1121 19 6 5.8323 -0.6005 2.2033 20 6 6.7090 -0.9425 1.1907 21 6 7.3365 -2.1741 1.2064 22 6 7.0813 -3.0669 2.2303 23 6 6.2006 -2.7270 3.2402 24 6 5.5760 -1.4939 3.2266 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6214 1.4025 -0.9313 30 1 1.4863 1.8550 2.4926 31 1 3.0222 1.3376 3.2286 32 1 1.8715 4.0766 5.4045 33 1 6.9056 -0.2464 0.3887 34 1 8.0242 -2.4399 0.4171 35 1 7.5695 -4.0302 2.2412 36 1 6.0008 -3.4247 4.0400 37 1 4.8883 -1.2282 4.0158 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814137939.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:10 Heat of formation + Delta-G solvation = -48.782261 kcal Electronic energy + Delta-G solvation = -21508.858922 eV Core-core repulsion = 18165.664918 eV Total energy + Delta-G solvation = -3343.194004 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.92430 -40.99725 -39.80802 -37.26642 -35.26904 -34.06446 -33.21658 -31.83443 -29.55839 -28.87565 -26.45371 -25.00571 -23.56844 -22.77341 -21.16618 -20.22376 -18.79441 -18.47690 -18.16174 -17.69864 -16.95924 -16.55092 -16.44624 -16.05012 -15.84415 -15.30614 -15.23456 -14.65818 -14.34196 -14.27014 -14.17085 -13.70957 -13.61626 -13.57126 -13.04948 -13.00324 -12.81311 -12.64415 -12.30522 -12.18111 -12.04359 -11.79000 -11.68219 -10.92316 -10.63236 -10.33019 -9.85301 -9.82964 -9.63932 -8.26277 -6.40402 0.24483 0.46749 1.22907 1.36905 1.37743 1.42966 1.53049 2.17978 2.38820 2.81528 3.04688 3.31402 3.38431 3.69584 3.98794 4.06970 4.13854 4.14698 4.25681 4.29254 4.46453 4.58731 4.68527 4.74618 4.78014 4.94153 4.99915 5.10284 5.12721 5.47713 5.49520 5.55377 5.59537 5.64578 5.69190 5.84663 5.97033 6.04462 6.33677 6.70119 7.02736 7.32040 8.79876 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014499 B = 0.006450 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.711385 B = 4340.238025 C = 5388.242128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.182 4.182 3 C 0.139 3.861 4 N -0.584 5.584 5 C 0.248 3.752 6 C -0.552 4.552 7 H 0.047 0.953 8 C 0.028 3.972 9 N -0.914 5.914 10 Si 0.953 3.047 11 H -0.276 1.276 12 H -0.272 1.272 13 H -0.276 1.276 14 C 0.498 3.502 15 O -0.566 6.566 16 C 0.125 3.875 17 H 0.113 0.887 18 F -0.199 7.199 19 C -0.143 4.143 20 C -0.093 4.093 21 C -0.130 4.130 22 C -0.104 4.104 23 C -0.123 4.123 24 C -0.108 4.108 25 H 0.106 0.894 26 H 0.121 0.879 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.036 0.964 31 H 0.031 0.969 32 H 0.270 0.730 33 H 0.108 0.892 34 H 0.147 0.853 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.384 -12.005 -2.803 12.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.202 4.202 3 C 0.017 3.983 4 N -0.314 5.314 5 C 0.128 3.872 6 C -0.590 4.590 7 H 0.065 0.935 8 C -0.173 4.173 9 N -0.553 5.553 10 Si 0.778 3.222 11 H -0.201 1.201 12 H -0.197 1.197 13 H -0.202 1.202 14 C 0.284 3.716 15 O -0.447 6.447 16 C 0.086 3.914 17 H 0.130 0.870 18 F -0.180 7.180 19 C -0.144 4.144 20 C -0.111 4.111 21 C -0.148 4.148 22 C -0.122 4.122 23 C -0.141 4.141 24 C -0.126 4.126 25 H 0.124 0.876 26 H 0.139 0.861 27 H 0.117 0.883 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.126 0.874 34 H 0.165 0.835 35 H 0.178 0.822 36 H 0.176 0.824 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.496 -12.105 -3.185 12.996 hybrid contribution 0.159 1.546 0.136 1.560 sum 3.655 -10.559 -3.049 11.582 Atomic orbital electron populations 1.24053 0.94801 1.03285 0.97590 1.23120 0.96815 0.97615 1.02601 1.20603 0.91864 0.96632 0.89189 1.48286 1.11779 1.56533 1.14783 1.19266 0.96234 0.92456 0.79279 1.21653 1.37159 0.97357 1.02827 0.93490 1.25559 0.94588 1.02254 0.94909 1.69979 1.39936 1.38354 1.07028 0.85580 0.78356 0.80175 0.78071 1.20101 1.19714 1.20157 1.20821 0.83129 0.77707 0.89903 1.90570 1.75363 1.50669 1.28094 1.20443 0.87043 0.84447 0.99495 0.86972 1.92824 1.65100 1.62404 1.97627 1.19921 1.01042 0.94799 0.98615 1.21099 0.95477 0.97869 0.96652 1.21449 1.00251 0.92995 1.00091 1.21652 0.97043 1.00257 0.93210 1.21484 0.96773 0.95821 1.00006 1.21273 0.99847 0.94398 0.97091 0.87595 0.86127 0.88329 0.89356 0.90678 0.94629 0.95093 0.92042 0.87381 0.83525 0.82188 0.82447 0.84853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 14.32 67.78 0.97 -3.16 16 2 C -0.18 -5.82 9.84 25.65 0.25 -5.57 16 3 C 0.14 5.21 5.84 85.63 0.50 5.71 16 4 N -0.58 -25.47 2.46 -830.51 -2.04 -27.51 16 5 C 0.25 11.90 4.93 85.63 0.42 12.32 16 6 C -0.55 -29.37 9.34 25.60 0.24 -29.13 16 7 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 8 C 0.03 1.49 5.46 84.65 0.46 1.95 16 9 N -0.91 -49.74 13.29 21.44 0.28 -49.46 16 10 Si 0.95 42.67 29.54 68.60 2.03 44.70 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 13 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 14 C 0.50 22.20 6.94 87.65 0.61 22.81 16 15 O -0.57 -26.46 14.74 -3.02 -0.04 -26.51 16 16 C 0.12 5.22 3.62 29.10 0.11 5.32 16 17 H 0.11 4.75 5.26 -2.38 -0.01 4.74 16 18 F -0.20 -9.12 16.92 44.97 0.76 -8.36 16 19 C -0.14 -5.11 5.01 -19.87 -0.10 -5.21 16 20 C -0.09 -3.13 8.56 22.27 0.19 -2.94 16 21 C -0.13 -3.30 10.05 22.27 0.22 -3.08 16 22 C -0.10 -2.17 10.05 22.27 0.22 -1.94 16 23 C -0.12 -2.76 10.05 22.27 0.22 -2.54 16 24 C -0.11 -3.16 9.67 22.27 0.22 -2.94 16 25 H 0.11 2.60 7.84 -2.91 -0.02 2.57 16 26 H 0.12 2.51 8.06 -2.91 -0.02 2.49 16 27 H 0.10 3.25 8.06 -2.91 -0.02 3.22 16 28 H 0.09 3.20 7.71 -2.39 -0.02 3.18 16 29 H 0.07 2.88 7.41 -2.39 -0.02 2.86 16 30 H 0.04 1.76 8.03 -2.39 -0.02 1.74 16 31 H 0.03 1.53 5.85 -2.39 -0.01 1.51 16 32 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 33 H 0.11 4.03 7.39 -2.91 -0.02 4.01 16 34 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 35 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 36 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 37 H 0.13 3.60 7.95 -2.91 -0.02 3.58 16 Total: -1.00 -63.42 325.78 6.59 -56.84 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 1.06 Total: 18.70 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 4.54 Total: -8.40 kcal Atomic # 7 Polarization: -75.22 SS G_CDS: -1.76 Total: -76.97 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.04 Total: -26.51 kcal Atomic # 9 Polarization: -9.12 SS G_CDS: 0.76 Total: -8.36 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -63.42 6.59 -56.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814137939.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.056 kcal (2) G-P(sol) polarization free energy of solvation -63.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds