Wall clock time and date at job start Mon Mar 30 2020 01:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47086 * 2 1 4 4 C 1.50705 * 109.46856 * 240.00588 * 2 1 3 5 5 H 1.08005 * 119.99599 * 239.99875 * 4 2 1 6 6 C 1.37870 * 120.00235 * 60.00012 * 4 2 1 7 7 N 1.31515 * 120.00159 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00024 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47090 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47425 * 120.00064 * 8 6 4 11 11 H 1.48503 * 109.46793 * 239.99537 * 8 6 4 12 12 N 1.46898 * 109.47140 * 120.00641 * 2 1 3 13 13 C 1.46905 * 110.99892 * 176.04488 * 12 2 1 14 14 C 1.46897 * 110.99937 * 299.99639 * 12 2 1 15 15 C 1.50699 * 109.47481 * 170.00150 * 14 12 2 16 16 C 1.34726 * 125.66670 * 90.01307 * 15 14 12 17 17 C 1.40945 * 107.02342 * 179.71926 * 16 15 14 18 18 C 1.35890 * 106.74537 * 0.40745 * 17 16 15 19 19 C 1.47886 * 125.92963 * 179.85581 * 18 17 16 20 20 N 1.34214 * 126.70148 * 359.74459 * 19 18 17 21 21 N 1.28984 * 107.24935 * 179.97438 * 20 19 18 22 22 N 1.28719 * 108.99771 * 359.97438 * 21 20 19 23 23 H 0.96997 * 125.31391 * 179.97438 * 22 21 20 24 24 N 1.28874 * 109.36381 * 359.97438 * 22 21 20 25 25 O 1.34288 * 125.67114 * 269.98130 * 15 14 12 26 26 H 1.09004 * 109.47638 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47022 * 299.99484 * 1 2 3 28 28 H 1.08997 * 109.47457 * 59.99559 * 1 2 3 29 29 H 0.97002 * 120.00020 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47109 * 183.95357 * 13 12 2 31 31 H 1.08994 * 109.47021 * 303.95156 * 13 12 2 32 32 H 1.09002 * 109.46934 * 63.95145 * 13 12 2 33 33 H 1.08997 * 109.47046 * 50.00047 * 14 12 2 34 34 H 1.09002 * 109.47274 * 290.00423 * 14 12 2 35 35 H 1.07999 * 126.48851 * 0.02562 * 16 15 14 36 36 H 1.08006 * 126.63145 * 180.26244 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 3.1462 -2.2868 -3.6040 10 1 1.1659 -1.5863 -4.8162 11 1 3.1463 -0.1870 -4.8166 12 7 2.0196 -0.6926 1.1993 13 6 3.4850 -0.7947 1.1869 14 6 1.5486 -0.0266 2.4210 15 6 1.8579 -0.8914 3.6158 16 6 2.9904 -0.8487 4.3443 17 6 2.8620 -1.8137 5.3636 18 6 1.6498 -2.4039 5.1934 19 6 1.0844 -3.4825 6.0324 20 7 1.6670 -4.0624 7.0934 21 7 0.8468 -4.9511 7.5419 22 7 -0.2133 -4.9493 6.8118 23 1 -0.9828 -5.5259 6.9392 24 7 -0.0926 -4.0617 5.8853 25 8 1.0503 -1.8321 4.1317 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 0.7080 1.1611 -3.4844 30 1 3.8164 -1.3724 2.0498 31 1 3.8068 -1.2916 0.2717 32 1 3.9192 0.2042 1.2299 33 1 0.4723 0.1322 2.3563 34 1 2.0519 0.9344 2.5280 35 1 3.8346 -0.1951 4.1814 36 1 3.5877 -2.0418 6.1303 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824384478.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:00 Heat of formation + Delta-G solvation = 155.969142 kcal Electronic energy + Delta-G solvation = -20827.052911 eV Core-core repulsion = 17544.950306 eV Total energy + Delta-G solvation = -3282.102604 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.64936 -42.46570 -37.15526 -34.67618 -33.66942 -33.23619 -32.60600 -30.38110 -28.97721 -27.16576 -24.95450 -24.74920 -24.07958 -22.64383 -21.62530 -20.40804 -19.48389 -19.35072 -17.40065 -17.29995 -16.35114 -16.02900 -15.34061 -14.61267 -14.32305 -14.08715 -13.86450 -13.23307 -13.01639 -12.78493 -12.60871 -12.51694 -12.05937 -11.84421 -11.63571 -11.33067 -11.30131 -11.15156 -11.03566 -10.70623 -10.62284 -10.20261 -10.09493 -9.92106 -9.75369 -8.94641 -8.48843 -8.19353 -7.31104 -6.05306 -4.09817 0.72564 1.14055 1.95483 2.30762 2.58428 2.85245 3.28120 3.36300 3.40849 3.72552 4.26289 4.39078 4.85971 5.03772 5.05410 5.19395 5.22272 5.28981 5.63847 5.82661 5.85381 6.01173 6.09413 6.15642 6.16124 6.32301 6.53237 6.74652 6.78880 6.99959 7.06975 7.19846 7.43083 7.62904 7.78508 7.92226 8.11283 8.24413 8.49414 8.96130 9.55367 11.01574 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.029162 B = 0.003566 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.929838 B = 7849.381055 C = 8096.958136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.213 3.787 3 H 0.003 0.997 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.533 5.533 13 C 0.030 3.970 14 C 0.115 3.885 15 C 0.063 3.937 16 C -0.224 4.224 17 C -0.127 4.127 18 C 0.025 3.975 19 C 0.264 3.736 20 N -0.257 5.257 21 N -0.048 5.048 22 N -0.226 5.226 23 H 0.477 0.523 24 N -0.283 5.283 25 O -0.148 6.148 26 H 0.036 0.964 27 H 0.009 0.991 28 H 0.087 0.913 29 H 0.260 0.740 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.014 0.986 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.155 0.845 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.349 -6.000 16.915 17.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.108 3.892 3 H 0.020 0.980 4 C -0.542 4.542 5 H 0.083 0.917 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.258 5.258 13 C -0.118 4.118 14 C -0.013 4.013 15 C 0.009 3.991 16 C -0.244 4.244 17 C -0.149 4.149 18 C -0.029 4.029 19 C -0.015 4.015 20 N -0.132 5.132 21 N -0.044 5.044 22 N -0.072 5.072 23 H 0.331 0.669 24 N -0.135 5.135 25 O -0.042 6.042 26 H 0.055 0.945 27 H 0.028 0.972 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.033 0.967 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.173 0.827 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.935 -6.871 17.122 18.473 hybrid contribution 0.207 0.280 -1.085 1.139 sum -0.727 -6.591 16.038 17.354 Atomic orbital electron populations 1.21899 0.97575 0.99956 1.00033 1.19301 0.92448 0.92126 0.85347 0.97969 1.21168 1.31122 1.12365 0.89562 0.91667 1.24922 0.95156 0.95069 0.99046 1.69894 1.36847 1.23046 1.23419 0.86448 0.78611 0.79617 0.82796 1.19713 1.21006 1.21118 1.62146 1.10003 1.52546 1.01114 1.22345 0.88139 0.99113 1.02202 1.20747 1.03128 0.91599 0.85789 1.23000 0.89508 0.90316 0.96273 1.21562 1.00064 1.04415 0.98371 1.21740 0.95706 0.96867 1.00617 1.17714 0.93755 0.98731 0.92663 1.21952 0.88076 0.97102 0.94389 1.76129 1.22346 1.05529 1.09195 1.78899 0.92695 1.15601 1.17164 1.47695 1.16735 1.25709 1.17105 0.66873 1.75244 1.20419 1.05038 1.12772 1.84084 1.42546 1.41729 1.35816 0.94451 0.97183 0.89410 0.92970 0.93273 0.90123 0.96731 0.88550 0.91910 0.82725 0.82419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.76 37.15 0.33 -2.92 16 2 C 0.21 5.20 2.06 -68.87 -0.14 5.06 16 3 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 4 C -0.50 -13.48 7.88 -34.44 -0.27 -13.75 16 5 H 0.07 1.75 6.41 -52.48 -0.34 1.42 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -24.89 11.32 55.43 0.63 -24.26 16 8 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.53 -11.20 4.61 -237.74 -1.10 -12.30 16 13 C 0.03 0.58 8.99 60.07 0.54 1.12 16 14 C 0.12 2.03 5.31 -4.98 -0.03 2.00 16 15 C 0.06 1.03 6.22 -35.55 -0.22 0.80 16 16 C -0.22 -3.13 9.37 -39.80 -0.37 -3.50 16 17 C -0.13 -1.70 10.84 -39.40 -0.43 -2.13 16 18 C 0.02 0.37 7.26 -36.48 -0.26 0.11 16 19 C 0.26 3.77 8.20 -156.25 -1.28 2.48 16 20 N -0.26 -3.44 12.53 32.08 0.40 -3.03 16 21 N -0.05 -0.53 13.46 60.35 0.81 0.28 16 22 N -0.23 -2.03 7.90 60.35 0.48 -1.55 16 23 H 0.48 1.78 8.96 -340.33 -3.05 -1.27 16 24 N -0.28 -3.65 12.41 32.09 0.40 -3.25 16 25 O -0.15 -2.55 10.67 4.72 0.05 -2.50 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.01 0.20 6.20 -51.93 -0.32 -0.12 16 28 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 29 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.05 0.83 6.31 -51.93 -0.33 0.51 16 31 H 0.08 1.67 6.10 -51.93 -0.32 1.35 16 32 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.10 1.71 5.83 -51.93 -0.30 1.41 16 34 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 35 H 0.16 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.16 1.74 8.06 -52.48 -0.42 1.31 16 LS Contribution 306.80 15.07 4.62 4.62 Total: -1.00 -30.90 306.80 -7.60 -38.51 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -6.64 Total: -3.29 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -2.24 Total: -9.21 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 1.62 Total: -44.12 kcal Atomic # 8 Polarization: -2.55 SS G_CDS: 0.05 Total: -2.50 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.90 -7.60 -38.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824384478.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.477 kcal (2) G-P(sol) polarization free energy of solvation -30.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds