Wall clock time and date at job start Mon Mar 30 2020 01:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46949 * 2 1 4 4 C 1.50696 * 109.47440 * 120.00816 * 2 1 3 5 5 H 1.08002 * 120.00227 * 119.99492 * 4 2 1 6 6 C 1.37872 * 119.99742 * 299.99501 * 4 2 1 7 7 N 1.31512 * 120.00372 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99865 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46749 * 90.00519 * 8 6 4 10 10 H 1.48501 * 109.47188 * 209.99845 * 8 6 4 11 11 H 1.48493 * 109.47087 * 330.00543 * 8 6 4 12 12 N 1.46907 * 109.46825 * 240.00765 * 2 1 3 13 13 C 1.46900 * 111.00070 * 183.95254 * 12 2 1 14 14 C 1.46897 * 111.00137 * 59.99677 * 12 2 1 15 15 C 1.50699 * 109.47481 * 190.00133 * 14 12 2 16 16 C 1.34726 * 125.66670 * 90.01307 * 15 14 12 17 17 C 1.40945 * 107.02342 * 179.71926 * 16 15 14 18 18 C 1.35890 * 106.74537 * 0.40745 * 17 16 15 19 19 C 1.47886 * 125.92963 * 179.85581 * 18 17 16 20 20 N 1.34214 * 126.70148 * 359.74459 * 19 18 17 21 21 N 1.28984 * 107.24935 * 179.97438 * 20 19 18 22 22 N 1.28719 * 108.99771 * 359.97438 * 21 20 19 23 23 H 0.96997 * 125.31391 * 179.97438 * 22 21 20 24 24 N 1.28874 * 109.36381 * 359.97438 * 22 21 20 25 25 O 1.34288 * 125.67114 * 269.98130 * 15 14 12 26 26 H 1.08990 * 109.47017 * 59.99196 * 1 2 3 27 27 H 1.09000 * 109.46949 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46466 * 299.99449 * 1 2 3 29 29 H 0.97001 * 120.00542 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46958 * 296.04389 * 13 12 2 31 31 H 1.08999 * 109.46719 * 56.04741 * 13 12 2 32 32 H 1.09006 * 109.46805 * 176.04545 * 13 12 2 33 33 H 1.08997 * 109.47046 * 70.00030 * 14 12 2 34 34 H 1.09002 * 109.47274 * 310.00407 * 14 12 2 35 35 H 1.07999 * 126.48851 * 0.02562 * 16 15 14 36 36 H 1.08006 * 126.63145 * 180.26244 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5887 1.1311 6 6 1.6995 -0.2396 2.4826 7 7 0.9430 0.8294 2.6035 8 14 2.3217 -1.1208 4.0077 9 1 3.6300 -0.5463 4.4121 10 1 1.3435 -0.9498 5.1119 11 1 2.4861 -2.5666 3.7115 12 7 2.0197 -0.6924 -1.1996 13 6 3.4851 -0.7944 -1.1873 14 6 1.5486 -0.0262 -2.4211 15 6 1.8578 -0.8907 -3.6161 16 6 1.0474 -1.8345 -4.1336 17 6 1.7186 -2.3932 -5.2399 18 6 2.9171 -1.7593 -5.3317 19 6 3.9614 -2.0204 -6.3458 20 7 3.9084 -2.9228 -7.3379 21 7 5.0142 -2.8333 -7.9957 22 7 5.7476 -1.9209 -7.4605 23 1 6.6296 -1.6588 -7.7674 24 7 5.1268 -1.4100 -6.4533 25 8 2.9864 -0.8481 -4.3425 26 1 -0.3633 0.5139 -0.8898 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 0.7085 1.1605 3.4845 30 1 3.9192 0.2045 -1.2302 31 1 3.8069 -1.2916 -0.2722 32 1 3.8163 -1.3720 -2.0504 33 1 2.0518 0.9348 -2.5280 34 1 0.4721 0.1327 -2.3563 35 1 0.0670 -2.1075 -3.7723 36 1 1.3523 -3.1757 -5.8880 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824384479.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:01 Heat of formation + Delta-G solvation = 133.639956 kcal Electronic energy + Delta-G solvation = -20834.219698 eV Core-core repulsion = 17551.148827 eV Total energy + Delta-G solvation = -3283.070871 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.58758 -43.62913 -38.80492 -35.63406 -35.00778 -34.55736 -33.99783 -31.84347 -30.75230 -28.51233 -26.74229 -25.74195 -25.45232 -24.09258 -22.72447 -21.76779 -21.05342 -20.27215 -18.58613 -18.35253 -18.15965 -17.40000 -16.88501 -16.21578 -15.89247 -15.44945 -15.22928 -14.78959 -14.18934 -14.00344 -13.94922 -13.84437 -13.51014 -13.13384 -12.94051 -12.72604 -12.64271 -12.57399 -12.53170 -12.30484 -12.25644 -12.06974 -11.95303 -11.82229 -10.93025 -10.82462 -10.50405 -9.37226 -9.01862 -8.09757 -6.20964 -0.27465 0.14118 1.09922 1.20310 1.43873 1.45697 1.55707 1.59227 1.79557 2.44427 2.71007 3.17890 3.19854 3.46865 3.74173 4.02691 4.03425 4.25523 4.37269 4.46229 4.56572 4.68317 4.77207 4.86030 4.95508 5.03117 5.05219 5.10843 5.24236 5.48726 5.51492 5.53029 5.72830 5.78750 6.03328 6.27713 6.32192 6.64052 6.91519 6.97207 7.47819 8.95926 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.033765 B = 0.003507 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.065370 B = 7982.062201 C = 8398.341010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.216 3.784 3 H -0.030 1.030 4 C -0.520 4.520 5 H 0.058 0.942 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.957 3.043 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.536 5.536 13 C 0.043 3.957 14 C 0.124 3.876 15 C 0.028 3.972 16 C -0.194 4.194 17 C -0.120 4.120 18 C 0.014 3.986 19 C 0.248 3.752 20 N -0.271 5.271 21 N -0.043 5.043 22 N -0.194 5.194 23 H 0.497 0.503 24 N -0.297 5.297 25 O -0.176 6.176 26 H 0.039 0.961 27 H 0.036 0.964 28 H 0.061 0.939 29 H 0.262 0.738 30 H 0.010 0.990 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.041 0.959 34 H 0.123 0.877 35 H 0.177 0.823 36 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.461 -4.233 -18.684 19.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.110 3.890 3 H -0.013 1.013 4 C -0.559 4.559 5 H 0.077 0.923 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.783 3.217 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.194 1.194 12 N -0.261 5.261 13 C -0.105 4.105 14 C -0.003 4.003 15 C -0.025 4.025 16 C -0.213 4.213 17 C -0.143 4.143 18 C -0.039 4.039 19 C -0.031 4.031 20 N -0.145 5.145 21 N -0.038 5.038 22 N -0.046 5.046 23 H 0.357 0.643 24 N -0.150 5.150 25 O -0.072 6.072 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.029 0.971 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.141 0.859 35 H 0.194 0.806 36 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 5.724 -4.684 -19.009 20.398 hybrid contribution 1.033 1.007 1.213 1.885 sum 6.756 -3.677 -17.796 19.388 Atomic orbital electron populations 1.21709 0.96502 0.99821 1.00275 1.19108 0.93219 0.90355 0.86298 1.01255 1.21405 1.31214 1.12357 0.90899 0.92342 1.25637 0.95348 0.95747 1.01688 1.69997 1.37582 1.24090 1.24089 0.85571 0.77940 0.79093 0.79114 1.20428 1.20834 1.19437 1.62148 1.10205 1.52245 1.01465 1.22164 0.87983 0.98869 1.01493 1.20757 1.02709 0.92430 0.84440 1.22745 0.84284 1.00823 0.94617 1.21827 1.03348 0.98331 0.97817 1.22079 0.91786 1.01291 0.99101 1.18059 0.94930 0.98068 0.92824 1.21932 0.91019 0.94248 0.95874 1.76132 1.13626 1.19565 1.05200 1.78850 0.97880 1.07958 1.19110 1.47725 1.18882 1.21663 1.16318 0.64315 1.75171 1.07772 1.23411 1.08670 1.84018 1.38771 1.49332 1.35040 0.94174 0.94451 0.91994 0.92884 0.97117 0.91643 0.92473 0.94135 0.85918 0.80566 0.79975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.76 71.98 0.63 -5.11 16 2 C 0.22 10.64 2.06 44.17 0.09 10.73 16 3 H -0.03 -1.64 8.14 -2.39 -0.02 -1.66 16 4 C -0.52 -28.05 7.88 25.60 0.20 -27.84 16 5 H 0.06 3.16 6.41 -2.91 -0.02 3.14 16 6 C 0.01 0.80 5.30 84.65 0.45 1.25 16 7 N -0.92 -51.57 11.32 21.44 0.24 -51.33 16 8 Si 0.96 43.08 29.54 68.60 2.03 45.11 16 9 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 12 N -0.54 -22.44 4.61 -906.03 -4.18 -26.62 16 13 C 0.04 1.76 9.09 127.69 1.16 2.92 16 14 C 0.12 4.29 5.31 85.56 0.45 4.74 16 15 C 0.03 0.87 5.88 24.88 0.15 1.02 16 16 C -0.19 -5.20 10.78 22.13 0.24 -4.96 16 17 C -0.12 -3.02 10.84 22.39 0.24 -2.78 16 18 C 0.01 0.39 7.26 24.28 0.18 0.57 16 19 C 0.25 6.58 8.20 137.10 1.12 7.71 16 20 N -0.27 -6.69 12.53 -52.43 -0.66 -7.34 16 21 N -0.04 -0.84 13.46 37.02 0.50 -0.34 16 22 N -0.19 -2.94 7.90 37.02 0.29 -2.65 16 23 H 0.50 2.15 8.96 -347.51 -3.11 -0.97 16 24 N -0.30 -6.93 12.41 -52.38 -0.65 -7.58 16 25 O -0.18 -5.72 10.06 -6.03 -0.06 -5.78 16 26 H 0.04 1.55 6.20 -2.39 -0.01 1.53 16 27 H 0.04 1.67 8.14 -2.39 -0.02 1.66 16 28 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 29 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 30 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 2.83 6.10 -2.39 -0.01 2.81 16 32 H 0.06 2.14 6.80 -2.38 -0.02 2.13 16 33 H 0.04 1.42 8.12 -2.39 -0.02 1.40 16 34 H 0.12 3.88 5.83 -2.39 -0.01 3.87 16 35 H 0.18 4.00 8.06 -2.91 -0.02 3.97 16 36 H 0.18 3.58 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -65.05 307.86 0.45 -64.60 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -1.98 Total: 3.69 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 4.92 Total: -11.75 kcal Atomic # 7 Polarization: -91.42 SS G_CDS: -4.45 Total: -95.87 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.06 Total: -5.78 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -65.05 0.45 -64.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824384479.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.243 kcal (2) G-P(sol) polarization free energy of solvation -65.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds