Wall clock time and date at job start Mon Mar 30 2020 01:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50704 * 119.99814 * 2 1 4 4 N 1.46500 * 109.47484 * 124.99826 * 3 2 1 5 5 C 1.46502 * 119.99581 * 278.09783 * 4 3 2 6 6 C 1.50696 * 109.47605 * 269.99929 * 5 4 3 7 7 H 1.08007 * 119.99594 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00299 * 180.02562 * 6 5 4 9 9 N 1.31507 * 119.99910 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99964 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.46997 * 90.00073 * 10 8 6 12 12 H 1.48500 * 109.47279 * 210.00017 * 10 8 6 13 13 H 1.48505 * 109.47112 * 330.00481 * 10 8 6 14 14 C 1.34772 * 120.00320 * 98.09889 * 4 3 2 15 15 O 1.21550 * 120.00181 * 186.12140 * 14 4 3 16 16 C 1.47847 * 119.99926 * 6.12985 * 14 4 3 17 17 C 1.39575 * 120.14352 * 150.43876 * 16 14 4 18 18 C 1.37954 * 119.84923 * 180.02562 * 17 16 14 19 19 C 1.38357 * 120.15059 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.85820 * 180.02562 * 19 18 17 21 21 F 1.39903 * 109.47135 * 90.00116 * 20 19 18 22 22 C 1.38366 * 120.28903 * 0.27552 * 19 18 17 23 23 C 1.37956 * 120.14310 * 359.45295 * 22 19 18 24 24 H 1.08000 * 120.00539 * 0.02562 * 1 2 3 25 25 H 1.08004 * 120.00123 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.00539 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47435 * 4.99388 * 3 2 1 28 28 H 1.09005 * 109.47052 * 244.99419 * 3 2 1 29 29 H 1.09005 * 109.47016 * 30.00670 * 5 4 3 30 30 H 1.09004 * 109.46818 * 149.99740 * 5 4 3 31 31 H 0.97005 * 120.00351 * 179.97438 * 9 8 6 32 32 H 1.07998 * 120.07799 * 359.97438 * 17 16 14 33 33 H 1.08004 * 119.92882 * 179.97438 * 18 17 16 34 34 H 1.08999 * 109.46837 * 210.00098 * 20 19 18 35 35 H 1.09003 * 109.46784 * 329.99936 * 20 19 18 36 36 H 1.08001 * 119.92709 * 179.70917 * 22 19 18 37 37 H 1.07995 * 120.07559 * 180.25568 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3321 1.1314 5 6 2.5129 1.6970 2.4663 6 6 2.6362 3.1870 2.6548 7 1 3.0326 3.8009 1.8595 8 6 2.2429 3.7666 3.8425 9 7 2.3500 5.0670 4.0067 10 14 1.5567 2.7049 5.2177 11 1 2.6666 2.2515 6.0938 12 1 0.5868 3.4960 6.0169 13 1 0.8712 1.5231 4.6356 14 6 4.2916 1.0212 0.9443 15 8 5.0396 0.9348 1.8985 16 6 4.8057 0.7855 -0.4217 17 6 6.1375 1.0693 -0.7281 18 6 6.6107 0.8475 -2.0048 19 6 5.7685 0.3444 -2.9804 20 6 6.2925 0.1041 -4.3728 21 9 6.7947 -1.1986 -4.4638 22 6 4.4459 0.0657 -2.6847 23 6 3.9614 0.2777 -1.4105 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 1.4684 1.4028 2.5693 30 1 3.1106 1.1847 3.2203 31 1 2.0731 5.4749 4.8421 32 1 6.7959 1.4625 0.0324 33 1 7.6409 1.0671 -2.2434 34 1 5.4841 0.2329 -5.0925 35 1 7.0887 0.8164 -4.5893 36 1 3.7924 -0.3225 -3.4519 37 1 2.9300 0.0559 -1.1798 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854595383.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:03 Heat of formation + Delta-G solvation = -29.757706 kcal Electronic energy + Delta-G solvation = -21009.838360 eV Core-core repulsion = 17667.469322 eV Total energy + Delta-G solvation = -3342.369038 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.55409 -41.61132 -39.41756 -37.61274 -35.22052 -33.86489 -33.46135 -32.14352 -30.30226 -27.87045 -27.12772 -24.78532 -23.71440 -22.72213 -21.46287 -20.31672 -19.13030 -18.39439 -17.94711 -17.31061 -16.86195 -16.74601 -16.33869 -16.18905 -16.03616 -15.37143 -15.15518 -15.07346 -14.54415 -14.48257 -14.20357 -13.80026 -13.60943 -13.49298 -13.09134 -12.82963 -12.53761 -12.33843 -12.17548 -12.04117 -11.94798 -11.78469 -11.66196 -10.87767 -10.84722 -10.48425 -10.03844 -9.85229 -9.53165 -8.37775 -6.43727 -0.22956 0.31553 1.22840 1.30752 1.34418 1.43029 1.74078 2.24767 2.28039 2.73428 2.96318 3.41109 3.62328 3.73203 3.92023 3.99453 4.11725 4.15838 4.18584 4.32244 4.39784 4.53815 4.64482 4.72277 4.80262 4.83453 4.88988 4.98323 5.03971 5.19825 5.32662 5.38932 5.39698 5.45126 5.66226 5.83025 5.85321 6.18575 6.52728 6.57201 7.12517 7.26118 8.79051 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024707 B = 0.004569 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.028768 B = 6127.439985 C = 6780.932975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.198 4.198 3 C 0.101 3.899 4 N -0.585 5.585 5 C 0.227 3.773 6 C -0.541 4.541 7 H 0.029 0.971 8 C 0.016 3.984 9 N -0.942 5.942 10 Si 0.946 3.054 11 H -0.276 1.276 12 H -0.271 1.271 13 H -0.239 1.239 14 C 0.538 3.462 15 O -0.592 6.592 16 C -0.136 4.136 17 C -0.089 4.089 18 C -0.103 4.103 19 C -0.119 4.119 20 C 0.104 3.896 21 F -0.227 7.227 22 C -0.098 4.098 23 C -0.120 4.120 24 H 0.102 0.898 25 H 0.125 0.875 26 H 0.120 0.880 27 H 0.075 0.925 28 H 0.126 0.874 29 H 0.051 0.949 30 H 0.019 0.981 31 H 0.270 0.730 32 H 0.116 0.884 33 H 0.155 0.845 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.169 0.831 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.035 -12.433 -19.301 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.217 4.217 3 C -0.020 4.020 4 N -0.313 5.313 5 C 0.105 3.895 6 C -0.579 4.579 7 H 0.047 0.953 8 C -0.183 4.183 9 N -0.582 5.582 10 Si 0.768 3.232 11 H -0.202 1.202 12 H -0.196 1.196 13 H -0.162 1.162 14 C 0.328 3.672 15 O -0.474 6.474 16 C -0.139 4.139 17 C -0.108 4.108 18 C -0.120 4.120 19 C -0.119 4.119 20 C 0.050 3.950 21 F -0.209 7.209 22 C -0.116 4.116 23 C -0.138 4.138 24 H 0.120 0.880 25 H 0.143 0.857 26 H 0.138 0.862 27 H 0.094 0.906 28 H 0.143 0.857 29 H 0.069 0.931 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.134 0.866 33 H 0.172 0.828 34 H 0.134 0.866 35 H 0.125 0.875 36 H 0.186 0.814 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.294 -12.340 -18.681 22.391 hybrid contribution 0.076 0.378 1.478 1.527 sum 0.370 -11.962 -17.203 20.957 Atomic orbital electron populations 1.24155 0.95137 1.03415 0.95895 1.23173 0.96937 0.97656 1.03959 1.21726 0.93015 0.96944 0.90334 1.47842 1.07876 1.64938 1.10635 1.19335 0.95230 0.93782 0.81164 1.21514 1.42933 0.92317 1.01143 0.95275 1.25805 0.95379 0.96252 1.00854 1.70035 1.49058 1.11861 1.27218 0.85744 0.78888 0.79662 0.78879 1.20198 1.19590 1.16215 1.19019 0.82060 0.76601 0.89479 1.90687 1.57672 1.54521 1.44528 1.20048 0.96184 1.04869 0.92825 1.21281 0.93742 0.97964 0.97794 1.21260 1.01069 0.98410 0.91302 1.20812 0.94732 0.99218 0.97185 1.21093 1.01448 0.79684 0.92750 1.92788 1.89634 1.41293 1.97151 1.21448 0.95403 0.98156 0.96588 1.22536 1.01301 0.97147 0.92793 0.87969 0.85734 0.86205 0.90612 0.85728 0.93067 0.96302 0.92105 0.86633 0.82758 0.86607 0.87494 0.81394 0.80947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 14.32 67.79 0.97 -2.04 16 2 C -0.20 -4.84 8.22 25.66 0.21 -4.63 16 3 C 0.10 3.18 5.33 85.63 0.46 3.63 16 4 N -0.58 -25.23 2.45 -833.91 -2.04 -27.27 16 5 C 0.23 11.47 4.28 85.63 0.37 11.84 16 6 C -0.54 -32.48 9.94 25.60 0.25 -32.23 16 7 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 8 C 0.02 0.93 5.47 84.66 0.46 1.40 16 9 N -0.94 -59.86 13.96 21.45 0.30 -59.56 16 10 Si 0.95 44.93 27.47 68.60 1.88 46.82 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 H -0.24 -10.25 6.54 99.48 0.65 -9.60 16 14 C 0.54 24.18 7.46 86.79 0.65 24.83 16 15 O -0.59 -32.05 16.26 -3.87 -0.06 -32.11 16 16 C -0.14 -4.66 5.58 -20.09 -0.11 -4.77 16 17 C -0.09 -2.78 9.60 22.53 0.22 -2.56 16 18 C -0.10 -2.30 9.68 22.23 0.22 -2.08 16 19 C -0.12 -2.18 5.60 -19.80 -0.11 -2.29 16 20 C 0.10 1.22 7.67 71.24 0.55 1.77 16 21 F -0.23 -4.15 17.34 44.97 0.78 -3.37 16 22 C -0.10 -1.80 9.68 22.23 0.22 -1.59 16 23 C -0.12 -2.99 7.49 22.53 0.17 -2.82 16 24 H 0.10 2.08 7.84 -2.91 -0.02 2.06 16 25 H 0.12 1.90 8.06 -2.91 -0.02 1.88 16 26 H 0.12 2.71 7.58 -2.91 -0.02 2.69 16 27 H 0.08 2.53 7.78 -2.39 -0.02 2.51 16 28 H 0.13 3.37 4.07 -2.42 -0.01 3.36 16 29 H 0.05 2.38 7.13 -2.38 -0.02 2.36 16 30 H 0.02 1.03 6.77 -2.38 -0.02 1.01 16 31 H 0.27 15.88 8.31 -92.70 -0.77 15.11 16 32 H 0.12 3.96 7.92 -2.91 -0.02 3.94 16 33 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 34 H 0.12 0.70 8.08 -2.39 -0.02 0.68 16 35 H 0.11 0.81 8.08 -2.39 -0.02 0.79 16 36 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 37 H 0.17 3.83 2.82 -2.91 -0.01 3.82 16 Total: -1.00 -80.66 317.17 6.39 -74.27 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 1.02 Total: 12.78 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 4.51 Total: -11.55 kcal Atomic # 7 Polarization: -85.10 SS G_CDS: -1.74 Total: -86.84 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -0.06 Total: -32.11 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.78 Total: -3.37 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.88 Total: 46.82 kcal Total: -80.66 6.39 -74.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854595383.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.513 kcal (2) G-P(sol) polarization free energy of solvation -80.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds