Wall clock time and date at job start Mon Mar 30 2020 01:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45201 * 109.46892 * 2 1 4 4 C 1.34228 * 116.99465 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00380 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99597 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.50553 * 60.00185 * 6 4 3 8 8 C 1.53045 * 109.50113 * 180.02562 * 6 4 3 9 9 N 1.46853 * 109.52056 * 179.11820 * 8 6 4 10 10 C 1.46898 * 110.99560 * 174.16341 * 9 8 6 11 11 C 1.50698 * 109.47405 * 64.57071 * 10 9 8 12 12 H 1.08002 * 119.99822 * 4.88149 * 11 10 9 13 13 C 1.37878 * 120.00006 * 184.88190 * 11 10 9 14 14 N 1.31516 * 120.00024 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 120.00025 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47337 * 90.00120 * 15 13 11 17 17 H 1.48497 * 109.47466 * 210.00055 * 15 13 11 18 18 H 1.48498 * 109.47359 * 330.00094 * 15 13 11 19 19 C 1.46849 * 111.19717 * 298.25918 * 9 8 6 20 20 C 1.53035 * 109.52104 * 61.74410 * 19 9 8 21 21 C 1.53111 * 109.50286 * 299.91894 * 6 4 3 22 22 F 1.39901 * 109.52567 * 302.31157 * 21 6 4 23 23 F 1.39904 * 109.52468 * 62.50139 * 21 6 4 24 24 H 1.09000 * 109.47424 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46856 * 299.99276 * 1 2 3 26 26 H 1.09006 * 109.47555 * 59.99449 * 1 2 3 27 27 H 1.09005 * 109.46856 * 240.00724 * 2 1 3 28 28 H 1.08995 * 109.47199 * 120.00897 * 2 1 3 29 29 H 1.08991 * 109.46495 * 299.13528 * 8 6 4 30 30 H 1.09000 * 109.46274 * 59.10844 * 8 6 4 31 31 H 1.09005 * 109.46818 * 184.57340 * 10 9 8 32 32 H 1.08999 * 109.47053 * 304.56566 * 10 9 8 33 33 H 0.96997 * 119.99985 * 179.97438 * 14 13 11 34 34 H 1.08998 * 109.45808 * 181.76177 * 19 9 8 35 35 H 1.08993 * 109.46279 * 301.73512 * 19 9 8 36 36 H 1.08994 * 109.50367 * 60.76346 * 20 19 9 37 37 H 1.09007 * 109.49773 * 180.83715 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5855 3.4695 0.8903 8 6 5.4491 2.8581 -0.0014 9 7 6.0108 4.2148 -0.0222 10 6 7.4729 4.1813 0.1153 11 6 8.0745 3.4922 -1.0823 12 1 7.4428 3.1871 -1.9035 13 6 9.4312 3.2512 -1.1297 14 7 9.9563 2.6503 -2.1751 15 14 10.5237 3.7796 0.2904 16 1 10.6142 2.6777 1.2819 17 1 11.8811 4.0978 -0.2211 18 1 9.9446 4.9831 0.9394 19 6 5.6129 4.9357 -1.2381 20 6 4.0895 5.0769 -1.2735 21 6 3.4502 3.6856 -1.2502 22 9 3.8364 2.9764 -2.3926 23 9 2.0569 3.8098 -1.2243 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 5.7866 2.3390 0.8955 30 1 5.7836 2.3131 -0.8841 31 1 7.8553 5.2001 0.1785 32 1 7.7403 3.6361 1.0205 33 1 10.9108 2.4812 -2.2085 34 1 6.0696 5.9254 -1.2393 35 1 5.9465 4.3808 -2.1149 36 1 3.7563 5.6436 -0.4041 37 1 3.7935 5.5990 -2.1835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879372117.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:28 Heat of formation + Delta-G solvation = -184.747915 kcal Electronic energy + Delta-G solvation = -23082.010358 eV Core-core repulsion = 19302.151216 eV Total energy + Delta-G solvation = -3779.859142 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.82979 -46.79897 -40.47510 -38.08376 -36.52574 -33.42016 -32.13518 -31.54564 -31.05446 -27.31883 -24.83081 -23.83189 -22.93139 -21.78942 -20.70642 -19.59670 -17.83786 -17.32091 -17.05238 -16.85092 -16.59243 -15.85866 -15.50086 -14.84237 -14.57748 -14.00841 -13.97657 -13.53135 -13.39576 -13.21261 -13.03282 -12.90988 -12.67860 -12.38448 -12.18605 -11.99210 -11.82234 -11.70941 -11.38252 -11.18937 -11.15739 -10.64739 -10.57560 -10.45841 -10.43726 -10.07509 -10.01549 -9.57272 -8.63617 -7.47328 -6.13945 -4.15761 2.16803 2.55179 3.25343 3.33322 3.35078 3.79037 4.14595 4.31878 4.35577 4.41172 4.73823 4.81808 4.86498 5.03109 5.05012 5.15729 5.21011 5.32617 5.55674 5.57839 5.64001 5.74608 5.79340 5.82878 6.07811 6.25623 6.40440 6.54127 6.59606 6.77325 6.95539 7.41951 7.72745 7.82477 7.83028 8.37425 8.87739 9.47097 10.98787 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.025115 B = 0.005366 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.612171 B = 5217.235376 C = 5729.219512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.351 6.351 4 C 0.466 3.534 5 O -0.486 6.486 6 C -0.117 4.117 7 H 0.138 0.862 8 C 0.076 3.924 9 N -0.534 5.534 10 C 0.158 3.842 11 C -0.559 4.559 12 H 0.077 0.923 13 C 0.075 3.925 14 N -0.894 5.894 15 Si 0.879 3.121 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.263 1.263 19 C 0.055 3.945 20 C -0.151 4.151 21 C 0.298 3.702 22 F -0.192 7.192 23 F -0.194 7.194 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.035 0.965 32 H 0.030 0.970 33 H 0.264 0.736 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.918 1.124 4.960 17.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.268 6.268 4 C 0.307 3.693 5 O -0.372 6.372 6 C -0.137 4.137 7 H 0.156 0.844 8 C -0.052 4.052 9 N -0.258 5.258 10 C 0.032 3.968 11 C -0.598 4.598 12 H 0.095 0.905 13 C -0.128 4.128 14 N -0.532 5.532 15 Si 0.706 3.294 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.188 1.188 19 C -0.074 4.074 20 C -0.190 4.190 21 C 0.262 3.738 22 F -0.173 7.173 23 F -0.175 7.175 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.118 0.882 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.751 0.975 5.253 17.582 hybrid contribution 0.937 -0.583 -0.168 1.117 sum -15.814 0.392 5.085 16.616 Atomic orbital electron populations 1.21790 0.92614 1.02771 1.03589 1.23038 0.95371 0.80323 1.02681 1.86555 1.24043 1.32230 1.83948 1.23258 0.80852 0.92100 0.73081 1.90708 1.60278 1.42496 1.43689 1.22269 1.00505 0.90674 1.00287 0.84406 1.21761 0.86366 0.92521 1.04595 1.62450 1.13658 1.13844 1.35798 1.20181 0.82070 0.97516 0.97067 1.21664 0.93954 1.39546 1.04594 0.90501 1.24960 0.98077 0.94113 0.95695 1.69927 1.12551 1.41455 1.29258 0.86803 0.80072 0.79742 0.82812 1.20131 1.21257 1.18799 1.21964 0.90758 1.00534 0.94097 1.22678 0.98425 0.92621 1.05245 1.20933 0.76249 0.93714 0.82916 1.93050 1.90760 1.80566 1.52957 1.93034 1.31055 1.96685 1.96727 0.90344 0.91500 0.91388 0.91167 0.91195 0.89276 0.91389 0.94690 0.95239 0.92572 0.89543 0.92190 0.88210 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.29 37.16 0.38 -0.89 16 2 C 0.06 0.70 6.19 37.16 0.23 0.93 16 3 O -0.35 -5.17 9.30 -39.25 -0.37 -5.53 16 4 C 0.47 7.85 6.94 36.01 0.25 8.10 16 5 O -0.49 -9.51 15.73 -18.75 -0.29 -9.81 16 6 C -0.12 -1.86 2.44 -91.69 -0.22 -2.09 16 7 H 0.14 1.82 8.14 -51.93 -0.42 1.39 16 8 C 0.08 1.46 3.58 -3.83 -0.01 1.45 16 9 N -0.53 -10.27 4.86 -236.11 -1.15 -11.42 16 10 C 0.16 3.58 4.19 -4.98 -0.02 3.56 16 11 C -0.56 -15.14 8.28 -34.44 -0.29 -15.43 16 12 H 0.08 2.29 6.10 -52.49 -0.32 1.97 16 13 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 14 N -0.89 -27.02 13.96 55.43 0.77 -26.25 16 15 Si 0.88 20.89 27.37 -169.99 -4.65 16.24 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.26 -5.93 6.68 56.52 0.38 -5.55 16 19 C 0.05 0.97 4.93 -3.83 -0.02 0.95 16 20 C -0.15 -2.11 5.61 -26.65 -0.15 -2.26 16 21 C 0.30 4.71 1.65 -26.61 -0.04 4.66 16 22 F -0.19 -3.58 15.89 2.25 0.04 -3.55 16 23 F -0.19 -2.94 16.10 2.25 0.04 -2.90 16 24 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 28 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 29 H 0.09 1.71 8.06 -51.93 -0.42 1.29 16 30 H 0.07 1.55 6.72 -51.93 -0.35 1.21 16 31 H 0.04 0.79 7.54 -51.93 -0.39 0.40 16 32 H 0.03 0.67 7.25 -51.93 -0.38 0.30 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.09 1.43 8.12 -51.93 -0.42 1.00 16 35 H 0.06 1.24 6.30 -51.93 -0.33 0.91 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 307.20 15.07 4.63 4.63 Total: -1.00 -31.32 307.20 -6.12 -37.45 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.14 Total: 0.15 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 0.01 Total: 1.00 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: -0.37 Total: -37.67 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.66 Total: -15.34 kcal Atomic # 9 Polarization: -6.52 SS G_CDS: 0.07 Total: -6.45 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.65 Total: 16.24 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.32 -6.12 -37.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879372117.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.302 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds