Wall clock time and date at job start Mon Mar 30 2020 01:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45201 * 109.46892 * 2 1 4 4 C 1.34228 * 116.99465 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00380 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99597 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.50553 * 60.00185 * 6 4 3 8 8 C 1.53045 * 109.50113 * 180.02562 * 6 4 3 9 9 N 1.46853 * 109.52056 * 179.11820 * 8 6 4 10 10 C 1.46898 * 110.99560 * 174.16341 * 9 8 6 11 11 C 1.50698 * 109.47405 * 64.57071 * 10 9 8 12 12 H 1.08002 * 119.99822 * 4.88149 * 11 10 9 13 13 C 1.37878 * 120.00006 * 184.88190 * 11 10 9 14 14 N 1.31516 * 120.00024 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 120.00025 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47337 * 90.00120 * 15 13 11 17 17 H 1.48497 * 109.47466 * 210.00055 * 15 13 11 18 18 H 1.48498 * 109.47359 * 330.00094 * 15 13 11 19 19 C 1.46849 * 111.19717 * 298.25918 * 9 8 6 20 20 C 1.53035 * 109.52104 * 61.74410 * 19 9 8 21 21 C 1.53111 * 109.50286 * 299.91894 * 6 4 3 22 22 F 1.39901 * 109.52567 * 302.31157 * 21 6 4 23 23 F 1.39904 * 109.52468 * 62.50139 * 21 6 4 24 24 H 1.09000 * 109.47424 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46856 * 299.99276 * 1 2 3 26 26 H 1.09006 * 109.47555 * 59.99449 * 1 2 3 27 27 H 1.09005 * 109.46856 * 240.00724 * 2 1 3 28 28 H 1.08995 * 109.47199 * 120.00897 * 2 1 3 29 29 H 1.08991 * 109.46495 * 299.13528 * 8 6 4 30 30 H 1.09000 * 109.46274 * 59.10844 * 8 6 4 31 31 H 1.09005 * 109.46818 * 184.57340 * 10 9 8 32 32 H 1.08999 * 109.47053 * 304.56566 * 10 9 8 33 33 H 0.96997 * 119.99985 * 179.97438 * 14 13 11 34 34 H 1.08998 * 109.45808 * 181.76177 * 19 9 8 35 35 H 1.08993 * 109.46279 * 301.73512 * 19 9 8 36 36 H 1.08994 * 109.50367 * 60.76346 * 20 19 9 37 37 H 1.09007 * 109.49773 * 180.83715 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5855 3.4695 0.8903 8 6 5.4491 2.8581 -0.0014 9 7 6.0108 4.2148 -0.0222 10 6 7.4729 4.1813 0.1153 11 6 8.0745 3.4922 -1.0823 12 1 7.4428 3.1871 -1.9035 13 6 9.4312 3.2512 -1.1297 14 7 9.9563 2.6503 -2.1751 15 14 10.5237 3.7796 0.2904 16 1 10.6142 2.6777 1.2819 17 1 11.8811 4.0978 -0.2211 18 1 9.9446 4.9831 0.9394 19 6 5.6129 4.9357 -1.2381 20 6 4.0895 5.0769 -1.2735 21 6 3.4502 3.6856 -1.2502 22 9 3.8364 2.9764 -2.3926 23 9 2.0569 3.8098 -1.2243 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 5.7866 2.3390 0.8955 30 1 5.7836 2.3131 -0.8841 31 1 7.8553 5.2001 0.1785 32 1 7.7403 3.6361 1.0205 33 1 10.9108 2.4812 -2.2085 34 1 6.0696 5.9254 -1.2393 35 1 5.9465 4.3808 -2.1149 36 1 3.7563 5.6436 -0.4041 37 1 3.7935 5.5990 -2.1835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879372117.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:28 Heat of formation + Delta-G solvation = -206.013240 kcal Electronic energy + Delta-G solvation = -23082.932492 eV Core-core repulsion = 19302.151216 eV Total energy + Delta-G solvation = -3780.781276 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.14622 -48.11730 -41.78832 -39.56770 -37.82991 -35.21838 -33.73449 -32.82770 -32.23180 -29.18914 -26.13261 -25.51021 -23.95471 -23.28438 -22.12131 -21.08747 -19.26326 -18.95380 -18.60139 -18.11371 -17.92780 -17.10541 -16.86065 -16.58596 -16.18350 -15.58049 -15.13478 -14.88140 -14.86864 -14.60795 -14.41470 -14.27551 -13.98330 -13.70910 -13.49141 -13.41364 -13.08935 -12.94926 -12.90688 -12.63596 -12.51065 -12.27858 -12.14310 -11.96273 -11.79423 -11.65416 -11.60746 -11.35974 -10.78614 -9.20719 -8.30522 -6.37415 0.83721 1.35298 1.39166 1.39705 1.51500 2.35186 2.50980 2.90196 2.95742 3.04946 3.10301 3.37806 3.73722 3.79858 3.94975 4.02577 4.03573 4.28948 4.31244 4.48044 4.53699 4.60227 4.78728 4.86489 4.89141 4.89803 5.02023 5.06920 5.08429 5.14699 5.32788 5.46742 5.95495 6.17286 6.25159 6.48510 6.70000 7.29535 8.86153 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.025115 B = 0.005366 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.612171 B = 5217.235376 C = 5729.219512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 O -0.348 6.348 4 C 0.468 3.532 5 O -0.524 6.524 6 C -0.111 4.111 7 H 0.178 0.822 8 C 0.083 3.917 9 N -0.516 5.516 10 C 0.161 3.839 11 C -0.556 4.556 12 H 0.031 0.969 13 C 0.009 3.991 14 N -0.950 5.950 15 Si 0.952 3.048 16 H -0.271 1.271 17 H -0.287 1.287 18 H -0.234 1.234 19 C 0.053 3.947 20 C -0.138 4.138 21 C 0.294 3.706 22 F -0.216 7.216 23 F -0.185 7.185 24 H 0.103 0.897 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.018 0.982 31 H 0.050 0.950 32 H 0.036 0.964 33 H 0.265 0.735 34 H 0.102 0.898 35 H 0.017 0.983 36 H 0.136 0.864 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.604 2.979 7.295 20.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 O -0.264 6.264 4 C 0.310 3.690 5 O -0.413 6.413 6 C -0.131 4.131 7 H 0.195 0.805 8 C -0.046 4.046 9 N -0.239 5.239 10 C 0.034 3.966 11 C -0.595 4.595 12 H 0.049 0.951 13 C -0.189 4.189 14 N -0.590 5.590 15 Si 0.775 3.225 16 H -0.196 1.196 17 H -0.213 1.213 18 H -0.157 1.157 19 C -0.075 4.075 20 C -0.176 4.176 21 C 0.258 3.742 22 F -0.197 7.197 23 F -0.166 7.166 24 H 0.122 0.878 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.036 0.964 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.035 0.965 36 H 0.154 0.846 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -18.496 2.852 7.594 20.197 hybrid contribution 1.343 -1.245 -0.986 2.080 sum -17.153 1.607 6.608 18.452 Atomic orbital electron populations 1.21816 0.89628 1.04555 1.03916 1.23410 0.97654 0.78871 1.02562 1.86549 1.22530 1.34096 1.83231 1.23439 0.81426 0.92026 0.72113 1.90696 1.61247 1.43706 1.45623 1.22232 0.97825 0.90904 1.02167 0.80510 1.21567 0.89013 0.91916 1.02081 1.62499 1.11456 1.13555 1.36381 1.20101 0.84065 0.97505 0.94934 1.21938 0.93675 1.39002 1.04899 0.95124 1.25992 0.99936 0.94244 0.98748 1.70104 1.12993 1.43807 1.32112 0.85640 0.77571 0.80387 0.78896 1.19646 1.21295 1.15663 1.22022 0.93817 1.00183 0.91516 1.22669 0.94960 0.91792 1.08182 1.21162 0.76748 0.94442 0.81845 1.93016 1.91070 1.81307 1.54313 1.93049 1.30289 1.96647 1.96615 0.87838 0.90585 0.91568 0.92144 0.90636 0.89588 0.96355 0.93206 0.94616 0.92578 0.87947 0.96481 0.84560 0.86781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 10.29 71.98 0.74 -1.34 16 2 C 0.05 1.09 6.19 71.98 0.45 1.54 16 3 O -0.35 -9.84 9.30 -51.40 -0.48 -10.31 16 4 C 0.47 15.64 6.94 71.24 0.49 16.13 16 5 O -0.52 -21.15 15.73 21.97 0.35 -20.80 16 6 C -0.11 -3.41 2.44 -11.49 -0.03 -3.43 16 7 H 0.18 4.02 8.14 -2.39 -0.02 4.00 16 8 C 0.08 3.23 3.58 86.33 0.31 3.53 16 9 N -0.52 -19.30 4.86 -900.93 -4.38 -23.67 16 10 C 0.16 7.15 4.19 85.56 0.36 7.51 16 11 C -0.56 -31.11 8.28 25.60 0.21 -30.90 16 12 H 0.03 1.96 6.10 -2.91 -0.02 1.94 16 13 C 0.01 0.50 5.47 84.65 0.46 0.96 16 14 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 15 Si 0.95 42.88 27.37 68.60 1.88 44.75 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 18 H -0.23 -9.35 6.68 99.48 0.66 -8.68 16 19 C 0.05 1.81 4.93 86.32 0.43 2.24 16 20 C -0.14 -3.46 5.61 30.65 0.17 -3.29 16 21 C 0.29 8.84 1.65 30.67 0.05 8.90 16 22 F -0.22 -8.23 15.89 44.97 0.71 -7.52 16 23 F -0.19 -5.11 16.10 44.97 0.72 -4.38 16 24 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.06 1.47 8.13 -2.38 -0.02 1.46 16 28 H 0.08 1.62 8.13 -2.39 -0.02 1.60 16 29 H 0.09 3.34 8.06 -2.39 -0.02 3.32 16 30 H 0.02 0.89 6.72 -2.39 -0.02 0.87 16 31 H 0.05 2.10 7.54 -2.38 -0.02 2.08 16 32 H 0.04 1.56 7.25 -2.39 -0.02 1.54 16 33 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 34 H 0.10 3.17 8.12 -2.39 -0.02 3.15 16 35 H 0.02 0.73 6.30 -2.39 -0.02 0.72 16 36 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.11 2.42 8.14 -2.38 -0.02 2.40 16 Total: -1.00 -72.08 307.20 3.78 -68.30 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 1.03 Total: 11.30 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 3.64 Total: 1.84 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -4.08 Total: -83.18 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -0.13 Total: -31.12 kcal Atomic # 9 Polarization: -13.34 SS G_CDS: 1.44 Total: -11.90 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.88 Total: 44.75 kcal Total: -72.08 3.78 -68.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879372117.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.716 kcal (2) G-P(sol) polarization free energy of solvation -72.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds